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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5371#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 920 fasta sequence
[AATCGCCCGAGGTTAAGAGGAACAGTTCTCCAACTTCCGCGATTTGCGGACATCAACATCTCGAACGATCCGGCGTACTCGCACCATGCGCCCCTGTACATGGGCATTGACGGGCGTGGGAAGCTCGCAATACCTGCCGCCATCGTCGGTGGCACCTGCCACAGTACCTGAAACCAGCACGGCCGATCCGGCGGTGAAGCGCGAACCGGATAACATACTGGACGAGCTGCGGTCGCTCGATGCGGCACCGGATTCGAAGGGCCGGCTGCGAAGCAAGGCGAAAAAGGAAACGCTGCTCGAGCGGAAAAAGCGACCAAAGTACGGCAAGAGCGTCAAGAGTGCCGCGGAGCCGCCGGAGNGGTGAAGATTACATGGTAGCGGCGAGCTAAGCCAGTGGACCCCGTGGGGTGGACCTAATCAGACTTGAGCGACAACAACGACAAAAAAACGACTTAATTGTACATTAAGGTTGGGGCTAGCGAATGTCACACGCTGTTGGTGCATTGGTAGCCACCGTTTAGTTCGTATAGTAATTTTTCTTCCCTCCCCTCCCACTAGCGTTCCAACCTTTCAGCTCGTTCCAATCACCACTCATTCTCATCACTCGAACGGGCACATGGAACGGAACTAGATGATTTGCACGTAACCATCAAGCTCATATTCATTATCATCATCATTACTCATCGCTCATCTTTGGGACCGGGAGGAAACAAACCGGGGCACACTTGGCTCACCCTGGTAGTCGACCCAAATCTGTACTCCCTGGAAATTACGGCGTA-TAGCGNAAAT-GCAGTAGAATTAATTTTCCCAACGTCAGACCAACNTACCGCCGGTNGNGTACGAGCTTATTCGACCGGATAAAACTTCNATCCTCATCTCGGACTAAGTAACCCCGGTTNNACANTTTTGTCCCNAACTAC]
[+] EMBL AL932096 [AATCGCCCGAGGTTAAGAGGAACAGTTCTCCAACTTCCGCGATTTGCGGACATCAACATCTCGAACGATCCGGCGTACTCGCACCATGCGCCCCTGTACATGGGCATTGACGGGCGTGGGAAGCTCGCAATACCTGCCGCCATCGTCGGTGGCACCTGCCACAGTACCTGAAACCAGCACGGCCGATCCGGCGGTGAAGCGCGAACCGGATAACATACTGGACGAGCTGCGGTCGCTCGATGCGGCACCGGATTCGAAGGGCCGGCTGCGAAGCAAGGCGAAAAAGGAAACGCTGCTCGAGCGGAAAAAGCGACCAAAGTACGGCAAGAGCGTCAAGAGTGCCGCGGAGCCGCCGGAGNGGTGAAGATTACATGGTAGCGGCGAGCTAAGCCAGTGGACCCCGTGGGGTGGACCTAATCAGACTTGAGCGACAACAACGACAAAAAAACGACTTAATTGTACATTAAGGTTGGGGCTAGCGAATGTCACACGCTGTTGGTGCATTGGTAGCCACCGTTTAGTTCGTATAGTAATTTTTCTTCCCTCCCCTCCCACTAGCGTTCCAACCTTTCAGCTCGTTCCAATCACCACTCATTCTCATCACTCGAACGGGCACATGGAACGGAACTAGATGATTTGCACGTAACCATCAAGCTCATATTCATTATCATCATCATTACTCATCGCTCATCTTTGGGACCGGGAGGAAACAAACCGGGGCACACTTGGCTCACCCTGGTAGTCGACCCAAATCTGTACTCCCTGGAAATTACGGCGTA TAGCGNAAAT GCAGTAGAATTAATTTTCCCAACGTCAGACCAACNTACCGCCGGTNGNGTACGAGCTTATTCGACCGGATAAAACTTCNATCCTCATCTCGGACTAAGTAACCCCGGTTNNACANTTTTGTCCCNAACTAC]
[+] EMBL BX621650 [ TTTGCGGACATCAACATCTCGAACGATCCGGCGTACTCGCACCATGCGCCCCTGTACATGGGCATGGACGGGCGTGGGAAGCTCGCAATACC GCCGCCATCGTCGGTGGCACCTGCCACAGTACCTGAAACCAGCACGGCCGATCCGGCGGTGAGGCGCGAACCGGATAACATACTGGACGAGCTGCGGTCGCTCGATGCGGCACCGGATTCGAAGGGCCGGCTGCGAAGCAAGGCGAAAAAGGAAACGCTGCTCGAGCGGAAAAAGCGACCAAAGTACGGCAAGAGCGTCAAGAGTGCCGCGGAGCCGCCGGAG GGTGAAGATTACATGGTAGCGGCGAGCTAAGCCAGTGGACCCCGTGGGG GGACCTAATCAGACTTGAGCGACAACAACGACAAAAAAACGACTTAATTGTACATTAAGGTTGGGGCTAGCGAATGTCACACGCTGTTGGTGCATTGGTAGCCACCGTTTAGTTCGT TAGTAA TTTTCTTCCCTCCCCTCCCACTAGCGTTCCAACCTTTCAGCTCGTTCCAATCACCACTCATTCTCATCACTCGAACGGCCACATGGAACGGAACTAGATGATTTGCACGTTACCATCAAGCTCATATTCATTATCATCATCATTACTCATCGCTCATC TGGGAC GGA GAAA AAAC GGC CACAT GCTCACCCT GTAGTCGA CCAACTCTGTACT CCTGGAAATTTCGTCGTACTAGCGTAGATAGCAGTAGAA TAATTT ]
consensusID : consensus_5371#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence
[CCGTGGGGGGACTTAATCAGACTTGAGCGACAACAACGACAAAAAAACGACTTAATTGTACATTAAGCGTTCCACCCTTTCAGCTCGTTCCAATCACCACTCATTCTCATCACTCGAACGGCCACATGGAACGGAACTAGATGATTTGCACGTTACCATCAAGCTCATATTCATTATCATCATCATTACTCATCGCTCATCTGGGACGGAGAAAAAACGGCCACATGCTCACCCTGTAGTCGACCAACTCTGTACTCCTGGAATTTCGTCGTACTAGCGTAGATAGCAGTAGAATAATTTTCCCAACGTCGCACACTTCCGTTCGGGTGCAGTACAGGCTTATCGACACCGGCATCAACACCTTCCTATCCCTCTCTCGGGACACTAAGTAATCCCCCGGGGGTGTGTTTATATATGTGTGTCACCCTCTACCTACGCGGAGGCTACTACACGGCTAATGACGACCGAATAGGTTCTGGCGGGAGGGCGCGTTGGTCGATAACGATTTCTGTACTTGCCACCTATCTGGATGTGATCGCATCGTACGTTGCAGTGGGAAGATCAAAATTGTGTGCTCCTTACATGACATAGTTGAATAAAAACAAAGTTTTACCTTTAAAAAGACAA]
[-] EMBL BM655446 [CCGTGGGGGGACTTAATCAGACTTGAGCGACAACAACGACAAAAAAACGACTTAATTGTACATTAAGCGTTCCACCCTTTCAGCTCGTTCCAATCACCACTCATTCTCATCACTCGAACGGCCACATGGAACGGAACTAGATGATTTGCACGTTACCATCAAGCTCATATTCATTATCATCATCATTACTCATCGCTCATCTGGGACGGAGAAAAAACGGCCACATGCTCACCCTGTAGTCGACCAACTCTGTACTCCTGGAATTTCGTCGTACTAGCGTAGATAGCAGTAGAATAATTTTCCCAACGTCGCACACTTCCGTTCGGGTGCAGTACAGGCTTATCGACACCGGCATCAACACCTTCCTATCCCTCTCTCGGGACACTAAGTAATCCCCCGGGGGTGTGTTTATATATGTGTGTCACCCTCTACCTACGCGGAGGCTACTACACGGCTAATGACGACCGAATAGGTTCTGGCGGGAGGGCGCGTTGGTCGATAACGATTTCTGTACTTGCCACCTATCTGGATGTGATCGCATCGTACGTTGCAGTGGGAAGATCAAAATTGTGTGCTCCTTACATGACATAGTTGAATAAAAACAAAGTTTTACCTTTAAAAAGACAA]
consensusID : consensus_5371#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[CCGGTTAGTAATTTTCTTCCCTCCCCTCCCACTAGCGTTCCAACCTTTCAGCTCGTTCCAATCACCACTCATTCTCATCACTCGAACGGCCACATGGAACGGAACTAGATGATTTGCACGTTACCATCAAGCTCATATTCATTATCATCATCATTACTCATCGCTCATCTGGGACGGAGAAAAAACGGCCACATGCTCACCCTGTAGTCGACCAACTCTGTACTCCTGGAATTTCGTCGTACTAGCGTAGATAGCAGTAGAATAATTTTCCCAACGTCGCACACTTCCGTTCGGGTGCAGTACAGGCTTATCGACACCGGCATCAACACCTTCCTATCCCTCTCTCGGGACACTAAGTAATCCCCCGGGGGTGTGTTTATATATGTGTGTCACCCTCTACCTACGCGGAGGCTACTACACGGCTAATGACGACCGAATAGGTTCTGGCGGGAGGGCGCGTTGGTCGATAACGATTTCTGTACTTGCCACCTATCTGGATGTGATCGCATCGTACGTTGCAGTGGGAAGATCAAAATTGTGTGCTCCTTACATGACATAGTTGAATAAAAACAAAGTTTTACCTTTAA]
[+] EMBL BM630549 [CCGGTTAGTAATTTTCTTCCCTCCCCTCCCACTAGCGTTCCAACCTTTCAGCTCGTTCCAATCACCACTCATTCTCATCACTCGAACGGCCACATGGAACGGAACTAGATGATTTGCACGTTACCATCAAGCTCATATTCATTATCATCATCATTACTCATCGCTCATCTGGGACGGAGAAAAAACGGCCACATGCTCACCCTGTAGTCGACCAACTCTGTACTCCTGGAATTTCGTCGTACTAGCGTAGATAGCAGTAGAATAATTTTCCCAACGTCGCACACTTCCGTTCGGGTGCAGTACAGGCTTATCGACACCGGCATCAACACCTTCCTATCCCTCTCTCGGGACACTAAGTAATCCCCCGGGGGTGTGTTTATATATGTGTGTCACCCTCTACCTACGCGGAGGCTACTACACGGCTAATGACGACCGAATAGGTTCTGGCGGGAGGGCGCGTTGGTCGATAACGATTTCTGTACTTGCCACCTATCTGGATGTGATCGCATCGTACGTTGCAGTGGGAAGATCAAAATTGTGTGCTCCTTACATGACATAGTTGAATAAAAACAAAGTTTTACCTTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5371#1 ------------------------------------------------------------
consensus_5371#2 ------------------------------------------------------------
consensus_5371#0 AATCGCCCGAGGTTAAGAGGAACAGTTCTCCAACTTCCGCGATTTGCGGACATCAACATC 60
consensus_5371#1 ------------------------------------------------------------
consensus_5371#2 ------------------------------------------------------------
consensus_5371#0 TCGAACGATCCGGCGTACTCGCACCATGCGCCCCTGTACATGGGCATTGACGGGCGTGGG 120
consensus_5371#1 ------------------------------------------------------------
consensus_5371#2 ------------------------------------------------------------
consensus_5371#0 AAGCTCGCAATACCTGCCGCCATCGTCGGTGGCACCTGCCACAGTACCTGAAACCAGCAC 180
consensus_5371#1 ------------------------------------------------------------
consensus_5371#2 ------------------------------------------------------------
consensus_5371#0 GGCCGATCCGGCGGTGAAGCGCGAACCGGATAACATACTGGACGAGCTGCGGTCGCTCGA 240
consensus_5371#1 ------------------------------------------------------------
consensus_5371#2 ------------------------------------------------------------
consensus_5371#0 TGCGGCACCGGATTCGAAGGGCCGGCTGCGAAGCAAGGCGAAAAAGGAAACGCTGCTCGA 300
consensus_5371#1 ------------------------------------------------------------
consensus_5371#2 ------------------------------------------------------------
consensus_5371#0 GCGGAAAAAGCGACCAAAGTACGGCAAGAGCGTCAAGAGTGCCGCGGAGCCGCCGGAGNG 360
consensus_5371#1 ------------------------------------------------------------
consensus_5371#2 ------------------------------------------------------------
consensus_5371#0 GTGAAGATTACATGGTAGCGGCGAGCTAAGCCAGTGGACCCCGTGGGGTGGACCTAATCA 420
consensus_5371#1 ------------------------------------------------------------
consensus_5371#2 ------------------------------------------------------------
consensus_5371#0 GACTTGAGCGACAACAACGACAAAAAAACGACTTAATTGTACATTAAGGTTGGGGCTAGC 480
consensus_5371#1 ----------CCGTGGGGGGACTTAATCAGACTTGAGCGACAACA-ACGACAAAAAAACG 49
consensus_5371#2 ------------------------------------------CCG-GTTAGTAATTTTCT 17
consensus_5371#0 GAATGTCACACGCTGTTGGTGCATTGGTAGCCACCGTTTAGTTCGTATAGTAATTTTTCT 540
* * *
consensus_5371#1 ACTTAATTGTACATTAAGCGTTCCACCCTTTCAGCTCGTTCCAATCACCACTCATTCTCA 109
consensus_5371#2 TCCCTCCCCTCCCACTAGCGTTCCAACCTTTCAGCTCGTTCCAATCACCACTCATTCTCA 77
consensus_5371#0 TCCCTCCCCTCCCACTAGCGTTCCAACCTTTCAGCTCGTTCCAATCACCACTCATTCTCA 600
* * * ********* **********************************
consensus_5371#1 TCACTCGAACGGCCACATGGAACGGAACTAGATGATTTGCACGTTACCATCAAGCTCATA 169
consensus_5371#2 TCACTCGAACGGCCACATGGAACGGAACTAGATGATTTGCACGTTACCATCAAGCTCATA 137
consensus_5371#0 TCACTCGAACGGGCACATGGAACGGAACTAGATGATTTGCACGTAACCATCAAGCTCATA 660
************ ******************************* ***************
consensus_5371#1 TTCATTATCATCATCATTACTCATCGCTCATCT--GGGACGGAGAAAAAAC------GGC 221
consensus_5371#2 TTCATTATCATCATCATTACTCATCGCTCATCT--GGGACGGAGAAAAAAC------GGC 189
consensus_5371#0 TTCATTATCATCATCATTACTCATCGCTCATCTTTGGGACCGGGAGGAAACAAACCGGGG 720
********************************* ***** * ** **** **
consensus_5371#1 CACAT---GCTCACCCTG-TAGTCGACC-AACTCTGTACTCCT--GGAATTTCGTCGTAC 274
consensus_5371#2 CACAT---GCTCACCCTG-TAGTCGACC-AACTCTGTACTCCT--GGAATTTCGTCGTAC 242
consensus_5371#0 CACACTTGGCTCACCCTGGTAGTCGACCCAAATCTGTACTCCCTGGAAATTACGGCGTA- 779
**** ********** ********* ** ********** * **** ** ****
consensus_5371#1 TAGCGTAGATAGCAGTAGAAT-AATTTTCCCAACGTCGCACACTTCCGTT-CGGGTGCAG 332
consensus_5371#2 TAGCGTAGATAGCAGTAGAAT-AATTTTCCCAACGTCGCACACTTCCGTT-CGGGTGCAG 300
consensus_5371#0 TAGCGNAAAT-GCAGTAGAATTAATTTTCCCAACGTCAGACCAACNTACCGCCGGTNGNG 838
***** * ** ********** *************** ** * *** *
consensus_5371#1 TACAGGCTTATCGACACCGGCATCAACACCTTCCTATCCCTCTCTCGGGACACTAAGTAA 392
consensus_5371#2 TACAGGCTTATCGACACCGGCATCAACACCTTCCTATCCCTCTCTCGGGACACTAAGTAA 360
consensus_5371#0 TACGAGCTTATTCG-ACCGGATAAAAC----TTCNATCCTCATCTCGG---ACTAAGTAA 890
*** ****** ***** *** * * **** ****** *********
consensus_5371#1 TCCCCCGGGGGTGTGTTTATATATGTGTGTCACCCTCTACCTACGCGGAGGCTACTACAC 452
consensus_5371#2 TCCCCCGGGGGTGTGTTTATATATGTGTGTCACCCTCTACCTACGCGGAGGCTACTACAC 420
consensus_5371#0 CCCC----------GGTTNNACANTTTTGTCCCNAACTAC-------------------- 920
*** * ** * * * **** * ****
consensus_5371#1 GGCTAATGACGACCGAATAGGTTCTGGCGGGAGGGCGCGTTGGTCGATAACGATTTCTGT 512
consensus_5371#2 GGCTAATGACGACCGAATAGGTTCTGGCGGGAGGGCGCGTTGGTCGATAACGATTTCTGT 480
consensus_5371#0 ------------------------------------------------------------
consensus_5371#1 ACTTGCCACCTATCTGGATGTGATCGCATCGTACGTTGCAGTGGGAAGATCAAAATTGTG 572
consensus_5371#2 ACTTGCCACCTATCTGGATGTGATCGCATCGTACGTTGCAGTGGGAAGATCAAAATTGTG 540
consensus_5371#0 ------------------------------------------------------------
consensus_5371#1 TGCTCCTTACATGACATAGTTGAATAAAAACAAAGTTTTACCTTTAAAAAGACAA 627
consensus_5371#2 TGCTCCTTACATGACATAGTTGAATAAAAACAAAGTTTTACCTTTAA-------- 587
consensus_5371#0 -------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||