These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [TTTTGAGCGTTTCGTAATCATTTGACTAACCCATTTATATTCACCTGGAGAGAGAGAGAGAGAGGAGAGAGGAGAGGCGACAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAAAGATTGATGAAGGAAGAGCAAACGAAGGGCGGGCGGCGTCGGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATTCGAAAAGAAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATGTATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACTTTACAAAACAGAGTGTCATCAGTAAAGGTGTGCGCAGAAGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATGATTGGAATAGGTTTTAGCAAAGTAAAAGCAAGACAGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCACATATATAACCATATTCTTCTGTGAAATATTGCATTATTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCT] [+] EMBL BX625615 [TTTTGAGCGTTTCGTAATCATTTGACTAACCCATTTATATTCACCTGGAGAGAGAGAGAGAGAGGAGAGAGGAGAGGCGACAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAAAGATTGATGAAGGAAGAGCAAACGAAGGGCGGGCGGCGTCGGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATTCGAAAAGAAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATGTATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACTTTACAAAACAGAGTGTCATCAGTAAAGGTGTGCGCAGAAGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATGATTGGAATAGGTTTTAGCAAAGTAAAAGCAAGACAGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCACATATATAACCATATTCTTCTGTGAAATATTGCATTATTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCT] consensusID : consensus_5374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence [GGCAAACTAAGGGCGGGCGGCGTCGGCATATACAAAAGTTGTGTAACGTTATAAAACATATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGTGGACATGATCGATCTCATTCGAAAAGGAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATATATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAGGGTGTGTGCAGAGGGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATCATTGGAATAGGTTTTAGAAAAGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCAGAGAAATGCGAACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTGGCGAAATAAGTAAAGGTGATAAATAAAGGCAAAATT] [+] EMBL BX617263 [GGCAAACTAAGGGCGGGCGGCGTCGGCATATACAAAAGTTGTGTAACGTTATAAAACATATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGTGGACATGATCGATCTCATTCGAAAAGGAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATATATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAGGGTGTGTGCAGAGGGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGTTAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATCATTGGAATAGGTTTTAGAAAAGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCAGAGAAATGCGAACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTGGCGAAATAA ] [+] EMBL BM638722 [ ccgCACGTACGATCGATTGATCCTCACGATCATTGGAATAGGTTTTAGAAAAGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCTAGTAAGAAAACGCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATACTAAGCTAACACACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCAGAGAAATGCGAACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTGGCGAAATAAGTAAAGGTGATAAATAAAGGCAAAATT] consensusID : consensus_5374#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [CCGGAGAGGGGAGGCGGCAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAGATTAATGAAGGAAGGGCAAACGAAGGGCGGCGTCGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACATAACATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATCCGAAAAGGAAGAAAGTGAAGAATGGTGCGAAGAAGTGGTGTTGATGCAATGATGTATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAAGGTGTGCGCAGAGGTAGGTGCAATTTTTCGTA] [+] EMBL BM654123 [CCGGAGAGGGGAGGCGGCAAATTCTATAAACATATTATAAGCGCATGACGGATAAGTACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAGATTAATGAAGGAAGGGCAAACGAAGGGCGGCGTCGCATATACGAAAGTTGAGTAACGTTATTAAACATATGCATACATAACATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATCCGAAAAGGAAGAAAGTGAAGAATGGTGCGAAGAAGTGGTGTTGATGCAATGATGTATTTGATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAAGGATTGCCAAAACAAAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCAGCAAAGGTGTGCGCAGAGGTAGGTGCAATTTTTCGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5374#0 TTTTGAGCGTTTCGTAATCATTTGACTAACCCATTTATATTCACCTGGAGAGAGAGAGAG 60 consensus_5374#2 ------------------------------------------------------------ consensus_5374#1 ------------------------------------------------------------ consensus_5374#0 AGAGGAGAGAGGAGAGGCGACAAATTCTATAAACATATTATAAGCGCATGACGGATAAGT 120 consensus_5374#2 ---CCGGAGAGGGGAGGCGGCAAATTCTATAAACATATTATAAGCGCATGACGGATAAGT 57 consensus_5374#1 ------------------------------------------------------------ consensus_5374#0 ACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAAAAGATTGATGAAGGAA 180 consensus_5374#2 ACGTTATTATCATAGAAAATGTTGTTTACTTAAGCATTTATGAA--GATTAATGAAGGAA 115 consensus_5374#1 ------------------------------------------------------------ consensus_5374#0 GAGCAAACGAAGGGCGGGCGGCGTCGGCATATACGAAAGTTGAGTAACGTTATTAAACAT 240 consensus_5374#2 GGGCAAACGAAGGG----CGGCGTCG-CATATACGAAAGTTGAGTAACGTTATTAAACAT 170 consensus_5374#1 -GGCAAACTAAGGGCGGGCGGCGTCGGCATATACAAAAGTTGTGTAACGTTATAAAACAT 59 ****** ***** ******** ******* ******* ********** ****** consensus_5374#0 ATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATT 300 consensus_5374#2 ATGCATACATAACATAATTAGTTACTCGAAGAGGGAGGGGGGGACATGATCGATCTCATC 230 consensus_5374#1 ATGCATACATAATATAATTAGTTACTCGAAGAGGGAGGGTGG-ACATGATCGATCTCATT 118 ************ ************************** ** **************** consensus_5374#0 CGAAAAGAAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATG--------TATTTG 352 consensus_5374#2 CGAAAAGGAAGAAAGTGAAGAATGGTGCGAAGAAGTGGTGTTGATGCAATGATGTATTTG 290 consensus_5374#1 CGAAAAGGAAGACAGTGAAGAATGGCGCGAAAGAGTGGCGTTGATA--------TATTTG 170 ******* **** ************ ***** ***** ****** ****** consensus_5374#0 ATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAA-GGATTGCCAAAACA 411 consensus_5374#2 ATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAAAGGATTGCCAAAACA 350 consensus_5374#1 ATAGTTTTGACTCTTTGAACAAGTTCAGGCACGAGGCCAAAAAAA-GGATTGCCAAAACA 229 ********************************************* ************** consensus_5374#0 AAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACTTTACAAAACAGAGTGTCATCA 471 consensus_5374#2 AAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCA 410 consensus_5374#1 AAATTAAGAAAATAAATTCGTTAGTAATTCGCCAAAACGTTACAAAACAGAGTATCATCA 289 ************************************** ************** ****** consensus_5374#0 GTAAAGGTGTGCGCAGAAG-AGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGT 530 consensus_5374#2 GCAAAGGTGTGCGCAGAGGTAGGTGCAATTTTTCGTA----------------------- 447 consensus_5374#1 GCAAGGGTGTGTGCAGAGGGAGGTGCAATTTTTCGTAATACATTTCACCAACATACGAGT 349 * ** ****** ***** * ***************** consensus_5374#0 TAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATGATTGGAATA 590 consensus_5374#2 ------------------------------------------------------------ consensus_5374#1 TAAACAATGATAGACTTACAACACACGTACGATCGATTGATCCTCACGATCATTGGAATA 409 consensus_5374#0 GGTTTTAGCAAAGTAAAAGCAAGACAGCAACAGCAA------------AACAGGCACGCT 638 consensus_5374#2 ------------------------------------------------------------ consensus_5374#1 GGTTTTAGAAAAGTAAAAGCAAGACAGCAACAGCAAGTGCAACAGCAAAACAGGCACGCT 469 consensus_5374#0 AGTAAGAAAACGCACATATATAACCATATTCTTCTGTGAAATATTGCATTATTTTCTATA 698 consensus_5374#2 ------------------------------------------------------------ consensus_5374#1 AGTAAGAAAACGCCCATATATAACCATATTCTTCTGTGAAATATTGCATTTTTTTCTATA 529 consensus_5374#0 CTAAGCTAACACACTAGCTCACATCAATTCT----------------------------- 729 consensus_5374#2 ------------------------------------------------------------ consensus_5374#1 CTAAGCTAACACACTAGCTCACATCAATTCTAACAAACTCTCAGAACACCCCGTCAGTCA 589 consensus_5374#0 ------------------------------------------------------------ consensus_5374#2 ------------------------------------------------------------ consensus_5374#1 GAGAAATGCGAACAACAAACCCCCCAAATCTGAATTGCACCCAATTGTGTGCAGCTCTTG 649 consensus_5374#0 ------------------------------------ consensus_5374#2 ------------------------------------ consensus_5374#1 GCGAAATAAGTAAAGGTGATAAATAAAGGCAAAATT 685 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||