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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 905 fasta sequence
[GAATCCCCCGAGGTGTAATAACATGTACTTAAGGGTCTGTACACATTGTTACGGTCCGTTTGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAAATCGATCGAGATCGGAGTAATTTCATTGGGAACAACTACGCAGGATGGGCAGCAGCGTCAGGTGAAAGTAGAGGTGTTGGGTGTGCTAGATCCGGAAGCTAAAATACTTCGCCTTCGCGCCGTGGAGCCCTTGCTGGACGCCGAAAAAAGCTACAAGAAGAGGTTTTCAAAAATTTTGGAACCACTTAGCGATTGGGTCCATAAGGATAGCGTCATTCTGACTGACCTTACCGTGGACAAAGGTACGCTGAACAGCATGGGATACAAAACCGTTATACAGGTTCCCGGTTCTGAACAGACGCTCAAGAACAGTAACGCAAATATAATGGACTATTTGCGGCGCATCGTGCCACGCATGTTCCAAAACACCTTGTCCCTTCTATCTCGACAAATCATCCAACAGTTCTTGAATGAGCTGGTGTGGCGTGAGCTGTATGGCAACAGCCCCGGCACAACATTCGATAACATAGTAAAACACTTATCTGAGGAAGCGAAAATTGAAACAAAGGAAAGTTTGACTACTCGCCTTCATAAGGCCGCCGCAGATCCCTTCAAGCAGTGGGAAATTGTATCCGATATGCCAGCGTTGGGCAAAGTTCCTGGTAAACGAGGCCGAAAACCCAAGGATCAATCGTTGTAGAGTTTGAAGAGAGGTAGAGGGACAAATTTTTGTACGCCATTTTTCAAACCCGCGCGCTCGCCCGCCTTTCTCTTCTAGATATGCTAGTTTTAGTTCGTAACGAAGTAATTGAATTACCACGTAATGTTATGTTCTGCAGAACCAACCATAGGAGT]
[+] EMBL AL932285 [GAATCCCCCGAGGTGTAATAACATGTACTTAAGGGTCTGTACACATTGTTACGGTCCGTTTGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAAATCGATCGAGATCGGAGTAATTTCATTGGGAACAACTACGCAGGATGGGCAGCAGCGTCAGGTGAAAGTAGAGGTGTTGGGTGTGCTAGATCCGGAAGCTAAAATACTTCGCCTTCGCGCCGTGGAGCCCTTGCTGGACGCCGAAAAAAGCTACAAGAAGAGGTTTTCAAAAATTTTGGAACCACTTAGCGATTGGGTCCATAAGGATAGCGTCATTCTGACTGACCTTACCGTGGACAAAGGTACGCTGAACAGCATGGGATACAAAACC ]
[+] EMBL BX626146 [ GGGAACTACTACGCAGGATGGGCAGCAGCGTCAGGTGAAAGTAGAGGTGTTGGGTGTGCTAGATCCGGAAGCTAAAATACTTCGCCTTCGCGCCGTGGAGCCCTTGCTGGACGCCGAAAAAAGCTACAAGAAAAGGTTTTCAAAAATTTTGGAACCACTTAGCGATTGGGTCCATAAGGATAGCGTCATTCTGACTGACCTTACCGTGGACAAAGGTACGCTGAACAGCATGGGATACAAAACCGTTATACAGGTTCCCGGTTCTGAACAGACGCTCAAGAACAGTAACGCAAATATAATGGACTATTTGCGGCGCATCGTGCCACGCATGTTCCAAAACACCTTGTCCCTTCTATCTCGACAAATCATCCAACAGTTCTTGAATGAGCTGGTGTGGCGTGAGCTGTATGGCAACAGCCCCGGCACAACATTCGATAACATAGTAAAACACTTATCTGAGGAAGCGAAAATTGAAACAAAGGAAAGTTTGACTACTCGCCTTCATAAGGCCGCCGCAGATCCCTTCAAGCAGTGGGAAATTGTATCCGATATGCCAGCGTTGGGCAAAGTTCCTGGTAAACGAGGCCGAAAACCCAAGGATCAATCGTTGTAGAGTTTGAAGAGAGGTAGAGGGACAAATTTTTGTACGCCATTTTTCAAACCCGCGCGCTCGCCCGCCTTTCTCTTCTAGATATGCTAGTTTTAGTTCGTAACGAAGTAATTGAATTACCACGTAATGTTATGTTCTGCAGAACCAACCATAGGAGT]
consensusID : consensus_5377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 841 fasta sequence
[CCGAAAACGACGCCCGTGCCCGCGAAAAAAACGAGAGAAGAAAAGGTCAAAACTCCGGATCCGAAGATCAAATCGCCGAAAACCCCTGGTTTAACACCAAAGGTCGCCGCTATTTCTGTACGACCCACCGAATTCAACTCCATCGGAGGGTTGCAAGTCGGCGCGGAAAAGGACAAAAAGCGATCCGCCGCAGAGCCCTCGGCCGTGGTCGATCTTACGAAAGATGATTCGGGCAAACCGACGGCCGATTCGCGAGAAATATCTTTCAGCAAGATTCAGGGTAAAACTTTCCCTTCACTCGTCGTACTAGCAAGACCGTCGTTGCGCGTCGTCGACAAAGCGGTAACCGACCGGCCCCAACTTGACGCGAAGGTGAAAAATGTCCTCGTCCACCCTGCGCCAAAGTTTACGGAATGGCTTATTCAGCAGGGATTAATCAAGTCGGAACAAACGTGTCAAATTCATAACGACAAGCCACTGAAGCTGGGCATGTATTCCGACACGAGCAAATTCCCGTACTCGGGTGGCTACTTTTGGATCAGTGATTGTTGTCCGACTAGGTTCACGTCTGTGTTCCATGGTTCGCTATTCGAGGGTTCACCACATCCTCCGTCAGTAATATTGAAGCTGATCTACCACTGGGCCTGCCAAACGAACGTATCCAACGTGGTGAACTGGGTGAAGGTCGATAACATGTACCTTAAGGGTCTGTACACATTGTTACGGTCCGTTTGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAATCGATCGAGATCGGAGTAATTTCATTGGGAACAACTACNCAGGATGGGCAGCAGCGTCA]
[+] EMBL BM603150 [CCGAAAACGACGCCCGTGCCCGCGAAAAAAACGAGAGAAGAAAAGGTCAAAACTCCGGATCCGAAGATCAAATCGCCGAAAACCCCTGGTTTAACACCAAAGGTCGCCGCTATTTCTGTACGACCCACCGAATTCAACTCCATCGGAGGGTTGCAAGTCGGCGCGGAAAAGGACAAAAAGCGATCCGCCGCAGAGCCCTCGGCCGTGGTCGATCTTACGAAAGATGATTCGGGCAAACCGACGGCCGATTCGCGAGAAATATCTTTCAGCAAGATTCAGGGTAAAACTTTCCCTTCACTCGTCGTACTAGCAAGACCGTCGTTGCGCGTCGTCGACAAAGCGGTAACCGACCGGCCCCAACTTGACGCGAAGGTGAAAAATGTCCTCGTCCACCCTGCGCCAAAGTTTACGGAATGGCTTATTCAGCAGGGATTAATCAAGTCGGAACAAACGTGTCAAATTCATAACGACAAGCCACTGAAGCTGGGCATGTATTCCGACACGAGCAAATTCCCGTACTCGGGTGGCTACTTTTGGATCAGTGATTGTTGTCCGACTAGGTTCACGTCTGTGTTCCATGGTTCGCTATTCGAGGGTTCACC ]
[+] EMBL BX620007 [ GGACAAAAAGCGATCCGCCGCAGAGCCCTCGGCCGTGGTCGATCTTACGAAAGATGATTCGGGCAAACCGACGGCCGATTCGCGAGAAATATCTTTCAGCAAGGTTCAGGGTAAAACTTTCCCTTCACTCGTCGTACTAGCAAGACCGTCGTTGCGCGTCGTCGACAAAGCGGTAACCGACCGGCCCCAACTTGACGCGAAGGTGAAAAATGTCCTCGTCCACCCTGCGCCAAAGTTTACGGAATGGCTTATTCAGCAGGGATTAATCAAGTCGGAACAAACGTGTCAAATTCATAACGACAAGCCACTGAAGCTGGGCATGTATTCCGACACGAGCAAATTCCCGTACTCGGGTGGCTACTTTTGGATCAGTGATTGTTGTCCGACTAGGTTCACGTCTGTGTTCCACGGTTCGCTTTTCGAGGGTTCACCACATCCTCCGTCAGTAATATTGAAGCTGATCTACCACTGGGCCTGCCAAACGAACGTATCCAACGTGGTGAACTGGGTGAAGGTCGATAACATGTACCTTAAGGGTCTGTACACATTGTTACGGTCCGTTTGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAATCGATCGAGATCGGAGTAATTTCATTGGGAACAACTACNCAGGATGGGCAGCAGCGTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5377#0 GAATCCCCCGAGGTGTAATAACATGTACTTAAGGGTCTGTACACATTGTTACGGTCCGTT 60
consensus_5377#1 ------------------------------------------------------------
consensus_5377#0 TGCACATTGGCATTATGTAGACATATGAAGCTTCTCGGCGGTCCCAAAAAATCGATCGAG 120
consensus_5377#1 ---------------------CCGAAAACGACGCCCGTGCCCGCGAAAAAAACGAGAGAA 39
* * * * * ** * ****** *** **
consensus_5377#0 ATCGGAGTAATTTCATTGGGAACAACTACGCAGGATGGGCAGCAGCGTCAGGTGAAAGTA 180
consensus_5377#1 GAAAAGGTCAAAACTCCGGATCCGA--AGATCAAATCGCCGAAAACCCCTGGTTTAACAC 97
** * * ** * * * ** * * * * * *** **
consensus_5377#0 GAGGTGTTGGGTGTGCTAGATCCGGAAGCTAAAATACTTCGCCTTCG-CGCCGTGGAGCC 239
consensus_5377#1 CAAAGGTCGC---CGCTATTTCTG-----TACGACCCACCGAATTCAACTCCATCGGAGG 149
* ** * **** ** * ** * * ** *** * ** * *
consensus_5377#0 CTTGCTGGACGCCGAAAAAAGCTACAAGAAGAGGTTT-TCAAAAATTTTGGAACCACTTA 298
consensus_5377#1 GTTGCAAGTCGGCGCGGAAAAGGACAAAAAGCGATCCGCCGCAGAGCCCTCGGCCG-TGG 208
**** * ** ** *** **** *** * * * * * ** *
consensus_5377#0 GCGATTGGGTCCATAAGGATAGCGTCATTCTGACTGACCTTACCGTGGACAAAGGTACGC 358
consensus_5377#1 TCGATCTTACGAAAGATGATTCGGGCAAACCGAC-GGCCGATTCGCGAGAAATATCTTTC 267
**** * * *** * ** * *** * ** ** * ** *
consensus_5377#0 TGAACAGCATGGGATACAAAAC-CGTTATACAGGTTCCCGGTTCTGAACAGACGCTCAAG 417
consensus_5377#1 AGCAAGATTCAGGGTAAAACTTTCCCTTCACTCGTCGTACTAGCAAGACCGTCGTTGCGC 327
* * ** ** ** * * ** ** * ** * ** *
consensus_5377#0 AACAGTAACGCAAATATAATGGACTATTTGCGGCGCATCGTG----CCACGCATGTTCCA 473
consensus_5377#1 GTCGTCGACAAAGCGGTAACCGACCGGCCCCAACTTGACGCGAAGGTGAAAAATGTCCTC 387
* ** * *** *** * * ** * * **** *
consensus_5377#0 AAACACCTTGTCCCTTCTATCTCG--ACAAATCATCCAACAGTTCTTGAATGAGCTGGTG 531
consensus_5377#1 GTCCACCCTGCGCCAAAGTTTACGGAATGGCTTATTCAGCAGGGATTAATCAAGTCGGAA 447
**** ** ** * ** * * ** ** *** ** * ** **
consensus_5377#0 TG---GCGTGAGCTGTATGGCAACAGCCCC----GGCACAACATTCGAT--AACATAGTA 582
consensus_5377#1 CAAACGTGTCAAATTCATAACGACAAGCCACTGAAGCTGGGCATGTATTCCGACACGAGC 507
* ** * * ** * *** ** ** *** * ***
consensus_5377#0 AAACACTTAT-CTGAGGAAGCGAAAATTGAAACAAAGGAAAGTTTGACTACTCGCCTTCA 641
consensus_5377#1 AAATTCCCGTACTCGGGTGGCTACTTTTGGATCA--GTGATTGTTGTCCGACTAGGTTCA 565
*** * * ** ** ** * *** * ** * * *** * ****
consensus_5377#0 TAAGGCCGCCGCAGATCCCTTCAAGCAGTGGGAAATTGTATCCGATATGCCAGCGTTGGG 701
consensus_5377#1 CGTCTGTGTTCCATGGTTCGCTATTCGAGGGTTCACCACATCC--TCCGTCAGTAATATT 623
* ** * * * ** * **** * * *** *
consensus_5377#0 CAAAGTTCCTGGTAAACGAGGCCGAAAACCCAAGG-ATCAATCGTTGTAGAGTT--TGAA 758
consensus_5377#1 GAAGCTGATCTACCACTGGGCCTGCCAAACGAACGTATCCAACGTGGTGAACTGGGTGAA 683
** * * * * * * ** * ** * *** * *** ** * * ****
consensus_5377#0 GAGAGGTAG-AGGGAC---AAATTTTTGTACGCCATTTTTCAAACCCGCGCGCTCGCCCG 814
consensus_5377#1 GGTCGATAACATGTACCTTAAGGGTCTGTACAC-ATTGTTACGGTCCGTTTGCACATTGG 742
* * ** * * ** ** * ***** * *** ** *** ** * *
consensus_5377#0 CCTTTCTCTTCTAGATATGCTAGTTTTAGTTCGTAACGAAGTAATTGAATTACCACGTAA 874
consensus_5377#1 CATTAT--GTAGACATATGAAGCTTCTCGGCGGTCCCAAA--AATCGATCGAGATCGGAG 798
* ** * * ***** ** * * ** * ** *** ** * ** *
consensus_5377#0 TG-TTATGTTCTGCAGAACCAACCATAGGAGT----------- 905
consensus_5377#1 TAATTTCATTGGGAACAACTACNCAGGATGGGCAGCAGCGTCA 841
* ** ** * * *** * ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||