These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1180 fasta sequence [CCGCCCACGCGTCCGCGGACGCGTGGGATCGAGTTTGGCAGCAAATCGAGCGAAACGTCGACCGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAACGTGCCACCGGTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAGAAAATGGCTACAGCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCCGCAGCAGCAGCAGCAGCAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATGGACCGGACGCGACAACCCGCGACGTACCCAACGGGCAAAGCGACCGTCATCCAGGGCCATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACGGTCAAGACGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGAGAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGAGAATTTGGAGCGTGCCCGAAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACAGCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGCACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCTTTTCCGGCCCGAAAACGAACAGCTTTGCCGAATTACACTCCGCCTCCTGGCAAACGTCCGCCGCGATAGCGTTCATCGAAAATCAAATCAAGATCTGCGAAATGATTGCGTCGCCGGCCGAGCTGAAGTACTGGTACTCGATGCTGGGCTTCCAGCTGGCACTGAACGGCAGCGAGGAGAAGATACGCCAGGTGCTGGACGATCTGC] [+] EMBL BM592130 [CCGCCCACGCGTCCGCGGACGCGTGGGATCGAGTTTGGCAGCAAATCGAGCGAAACGTCGACCGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAACGTGCCACCGGTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAGAAAATGGCTACAGCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCCGCAGCAGCAGCAGCAGCAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATGGACCGGACGCGACAACCCGCGACGTACCCAACGGGCAAAGCGACCGTCATCCAGGGCCATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACGGTCAAGACGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGAGAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGG ] [+] EMBL BM575551 [ ccGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGAGAATTTGGAGCGTGCCCGAAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACAGCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGCACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCTTTTCCGGCCCGAAAACGAACAGCTTTGCCGAATTACACTCCGCCTCCTGGCAAACGTCCGCCGCGATAGCGTTCATCGAAAATCAAATCAAGATCTGCGAAATGATTGCGTCGCCGGCCGAGCTGAAGTACTGGTACTCGATGCTGGGCTTCCAGCTGGCACTGAACGGCAGCGAGGAGAAGATACGCCAGGTGCTGGACGATCTGC] consensusID : consensus_5378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [TCCCCGAGGTTNGAAACGTCGACGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAACGTGCCACCGGTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAGAAAATGGCTACAGCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCAGCAGCAGCAACAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATGGACCGGACGCGACAACCCGCGACGTACCCAACGGGCAAAGCGACCGTCATCCAGGGCCATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACGGTCAAGACGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGAGAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCTTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGC] [+] EMBL AL933324 [TCCCCGAGGTTNGAAACGTCGACGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAACGTGCCACCGGTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAGAAAATGGCTACAGCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCAGCAGCAGCAACAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATGGACCGGACGCGACAACCCGCGACGTACCCAACGGGCAAAGCGACCGTCATCCAGGGCCATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACGGTCAAGACGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGAGAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCTTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGC] consensusID : consensus_5378#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [CCCGAGGTTATTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGCGAATTTGGAGCGTGCCCGAAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACAGCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGCACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCATTTATCCGGCCCGAAAACGAACAGCTTTGCCGAATTACACTCCGGCGCCTGGCAAACGTCCGCCGCGATAGCGTCATCGAAAATCAAATCAA] [+] EMBL AL932319 [CCCGAGGTTATTTGCCGTTGGGGCGAAGTATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCAACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGCGAATTTGGAGCGTGCCCGAAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACAGCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGCACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCATTTATCCGGCCCGAAAACGAACAGCTTTGCCGAATTACACTCCGGCGCCTGGCAAACGTCCGCCGCGATAGCGTCATCGAAAATCAAATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5378#0 CCGCCCACGCGTCCGCGGACGCGTGGGATCGAGTTTGGCAGCAAATCGAGCGAAACGTCG 60 consensus_5378#1 -------------------------------------TCCCCGAG--GTTNGAAACGTCG 21 consensus_5378#2 ------------------------------------------------------------ consensus_5378#0 ACCGTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAA 120 consensus_5378#1 AC-GTTGAGATAAAGCAGCGCGCCCACGAAGAGCCAACCATCATTCCGCCTCCCGCAGAA 80 consensus_5378#2 --------------------------------CCCGAGGTTATTTGCCGTTGGGGCGAAG 28 ** * * ** * * ** * consensus_5378#0 CGTGCCACCG-GTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAG--AAAATGGCTACA 177 consensus_5378#1 CGTGCCACCG-GTGAGCCGACGTCCAAGTTGGACAATCGGTTGAAG--AAAATGGCTACA 137 consensus_5378#2 TATGCGATCGTATGCAGCCAGGACCATACGATCCGGATGGTGGACATCAAGACGGGCACG 88 *** * ** ** * * * *** * *** ** ** * ** ** consensus_5378#0 GCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACCCGCAGCAGCAGCAGCAG 237 consensus_5378#1 GCACCGCCTCAGAAAGCTGAACCGATGACTGTTCCGACCGACC------AGCAGCAGCAA 191 consensus_5378#2 CCGGT-CTTTCCCGTGCTCAGCC--TCACGAGCCCGGCCGTAC-------TGAGCGCCTT 138 * * * *** * ** * ** *** *** * *** * consensus_5378#0 CAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATG 297 consensus_5378#1 CAGCAGCAGCTTTCCGCTCCCTCTAGCACGATTCAACCGGCAGCGAATCAGAAGCTGATG 251 consensus_5378#2 TAGCTCCAACTCACAGCTGGCTGGCGT-TGTTACCGAAAGTGGCATACTGCGAATT--TG 195 *** ** ** * *** ** * * * * * ** * * * ** consensus_5378#0 GACCGGACGCGACAACCCGCGACGTACC--CAACGGGCAAAGCGACCGTCATCCAGGGCC 355 consensus_5378#1 GACCGGACGCGACAACCCGCGACGTACC--CAACGGGCAAAGCGACCGTCATCCAGGGCC 309 consensus_5378#2 GAGCGTGCCCGAAAAAGCG-GTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAA 254 ** ** * *** ** ** * * *** * ** ** ** **** ** consensus_5378#0 ATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACG--GTCAAG-A 412 consensus_5378#1 ATTCGTTCAAAGCGTTTGGCGAGGTGCGGGTACAGATACAGAACAACACG--GTCAAG-A 366 consensus_5378#2 GTTTCGTAACAATTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATG 314 ** * * * ** ** * ** * * ** * *** * consensus_5378#0 CGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGA 472 consensus_5378#1 CGTCGTACGGCACGCTGTCCCGGGTGGTTGGGGTGGTCGTAACCGCTCAGCGAGTGGAGA 426 consensus_5378#2 GGTCGTCTTACA-GCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCC-GA 372 ***** ** *** * * * * * * * * * *** ** ** consensus_5378#0 GAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGT 532 consensus_5378#1 GAAAGCTCTGGGAAACGGTCGTCGGGTCGCCGATCGTTTGCTTTGCCGTTGGGGCGAAGT 486 consensus_5378#2 CCCGGTCATACGGCACGGTTT---GATCGGCAA-CAAAACCAACGCC-CCGGTGCGCAAC 427 * * * ***** * *** * * * * *** ** *** * consensus_5378#0 ATGCGATCGTATGCAGCCAGGACCATACGATCCG--GATGGTGGACATCAAGAC-GGGCA 589 consensus_5378#1 ATGCGATCGTATGCAGCCAGGACCATACGATCCG--GATGGTGGACATCAAGAC-GGGCA 543 consensus_5378#2 ATTAAAACGTACCCCCTCTCAACGATACAATCGTACGGCAGCATTTATCCGGCCCGAAAA 487 ** * **** * * ** **** *** * * *** * * * * consensus_5378#0 CGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCCTTTAGCTCCA 649 consensus_5378#1 CGCCGGTCTTTCCCGTGCTCAGCCTCACGAGCCCGGCCGTACTGAGCGCTTTTAGCTCCA 603 consensus_5378#2 CGAACAGCTTTGCCGAATT-ACACTCCGGCGCCTGGCAAACGTCCGCCGCGATAGCGTCA 546 ** **** *** * * *** * *** *** * ** **** ** consensus_5378#0 ACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGCATACTGAGAATTTGGAGCGTGCCCG 709 consensus_5378#1 ACTCACAGCTGGCTGGCGTTGTTACCGAAAGTGGC------------------------- 638 consensus_5378#2 TCGAAAATCAAATCAA-------------------------------------------- 562 * * * * consensus_5378#0 AAAAAGCGGTCCTACTATCGACTAGCTGTGCAGAGATCATGAGCGGAAGTTTCGTAACAA 769 consensus_5378#1 ------------------------------------------------------------ consensus_5378#2 ------------------------------------------------------------ consensus_5378#0 TTCTTCACGTATCGGATAAGGGAATGCCGTTCATTGTGCTGTCGAATGGGTCGTCTTACA 829 consensus_5378#1 ------------------------------------------------------------ consensus_5378#2 ------------------------------------------------------------ consensus_5378#0 GCTACTGCCGCAAGCTCGACAGCTGGATGCTAATCAATTCGTCCGACCCGGTCATACGGC 889 consensus_5378#1 ------------------------------------------------------------ consensus_5378#2 ------------------------------------------------------------ consensus_5378#0 ACGGTTTGATCGGCAACAAAACCAACGCCCCGGTGCGCAACATTAAAACGTACCCCCTCT 949 consensus_5378#1 ------------------------------------------------------------ consensus_5378#2 ------------------------------------------------------------ consensus_5378#0 CAACGATACAATCGTACGGCAGCTTTTCCGGCCCGAAAACGAACAGCTTTGCCGAATTAC 1009 consensus_5378#1 ------------------------------------------------------------ consensus_5378#2 ------------------------------------------------------------ consensus_5378#0 ACTCCGCCTCCTGGCAAACGTCCGCCGCGATAGCGTTCATCGAAAATCAAATCAAGATCT 1069 consensus_5378#1 ------------------------------------------------------------ consensus_5378#2 ------------------------------------------------------------ consensus_5378#0 GCGAAATGATTGCGTCGCCGGCCGAGCTGAAGTACTGGTACTCGATGCTGGGCTTCCAGC 1129 consensus_5378#1 ------------------------------------------------------------ consensus_5378#2 ------------------------------------------------------------ consensus_5378#0 TGGCACTGAACGGCAGCGAGGAGAAGATACGCCAGGTGCTGGACGATCTGC 1180 consensus_5378#1 --------------------------------------------------- consensus_5378#2 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||