|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5380#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 725 fasta sequence
[CCGGTTGAAAACGAGCGACGAAACTGTTGTTTCAGAAAGAGAAGAGTGTCCACAACAATTTCCGGAATTAATTGAACAGAATGTCCCGGAGGAAATAGCTCCCACGGTTCAACCACAATTTATGGACATCGTACAAATAAGCGAAGAATACATCCACACGGACGACGAGGCGGGTGTGGTGTTTCGGGAAAAGCGAATGATTACCGCACCATCCACGATTCCCACCATTCAGGTAACATCGGAAATAGCTGAGCCGGTTTCAAACGTCCCGGGAAAAGGTCCACCATCAACAGCAAGACGGAATCCGTCACTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGACGCCATCCAGAACGATTGGAGAACGGAAGTGGAGCCAAAGCAAACCCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGC]
[+] EMBL BM578319 [CCGGTTGAAAACGAGCGACGAAACTGTTGTTTCAGAAAGAGAAGAGTGTCCACAACAATTTCCGGAATTAATTGAACAGAATGTCCCGGAGGAAATAGCTCCCACGGTTCAACCACAATTTATGGACATCGTACAAATAAGCGAAGAATACATCCACACGGACGACGAGGCGGGTGTGGTGTTTCGGGAAAAGCGAATGATTACCGCACCATCCACGATTCCCACCATTCAGGTAACATCGGAAATAGCTGAGCCGGTTTCAAACGTCCCGGGAAAAGGTCCACCATCAACAGCAAGACGGAATCCGTCACTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGACGCCATCCAGAACGATTGGAGAACGGAAGTGGAGCCAAAGCAAACCCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGG ]
[+] EMBL BM575854 [ ccgCACAATTTATGGATATCGTACAAATAAGCGAAGAATACATCCACACGGACGACGAGGCGGGTGTGGTGTTTCGGGAAAAGCGAATGATCACCGCACCATCCACCATTCCCACCATTCAGGTAACATCGGAAATAGCTGAGCCGGTTTCAAACGACCCGGGAAAGGGTCCACCATCCACAGCAAGACGGAATCCGTCGCTTACAAGCCTTTCTACAGCGGTCACGTTGCCACCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGACGCCATCCAGAACGATTGGAGAACGTAAATGGAGCCAAAGCAAACCCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGC]
consensusID : consensus_5380#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 722 fasta sequence
[GCAGAATCGGCACGAGGCCGTCGCTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGGCGCCATCCAGAACGATTGGAGAACGGAAGTGGAGCCAAAGCAAAACCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGCGGGACCATCTAGCGGCACACGAGCTGTGGAAGCGCTTCCTCAGCGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGCGATTAAGGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAGCATCCGCCGGGNAGCAGACGGGTGGGGCAGGTTTTACCCGGTCGAAGGGCGGAANGAAATTTATTCTTTCCNAATTGCAGCGAAAGCAAAGGCATTGCCNGGCACGCGCGGTAGGACGGAAACTAATTCTGCGGCAGCC]
[+] EMBL BX467407 [GCAGAATCGGCACGAGGCCGTCGCTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACACGGACGCGCTGCGCGCCGAGCTGACCACGTTCGGTGAACCACCCGGCCCGATAACGAGTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGGCGCCATCCAGAACGATTGGAGAACGGAAGTGGAGCCAAAGCAAAACCTCAGCCAACTTTCTCCGTCGAGCTGGGCGCAACGGTAGAAAGGAGGATGTGTTCGAGGCGATCCTAGACCATCAGAGTTTGGAGGACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTGCGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGCGGGACCATCTAGCGGCACACGAGCTGTGGAAGCGCTTCCTCAGCGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGCGATTAAGGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAGCATCCGCCGGGNAGCAGACGGGTGGGGCAGGTTTTACCCGGTCGAAGGGCGGAANGAAATTTATTCTTTCCNAATTGCAGCGAAAGCAAAGGCATTGCCNGGCACGCGCGGTAGGACGGAAACTAATTCTGCGGCAGCC]
consensusID : consensus_5380#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 525 fasta sequence
[CAGAATCGNCACGAGGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGCGGGACCATCTACGGCACACGAGCTGTGGAAGCGCTTCCTCAGCGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGCGATTAAGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAACATCCGCCGGGAGCAGACGGGTGGTGCAGATTTTACCGTCGAGGCGGAAGAAATAATCTTCCAATGCAGCGAAGCAAGCATGGCGGTGGCAGGAGGAAATAATCTGCGCAAGCGAGGCCAGTCCGGCAAGGGGTCGGGACGCAAGCAGCAGGCAGTGGACAGTGCGAAGCTAAACCGCATCATCGACATCTGGGCCGCCGGCAAGGGTGTCGTGTGTCTGCACGTGTTCCACAACATCATGCCGGCCGAGGCGTACACGCGCGAGGCGGCCATTATCGATGCGTACGGTGTGCAGAACCTGACGAATCTGAAGCGGGGCGACTACTAC]
[+] EMBL AL932495 [CAGAATCGNCACGAGGCTCGATCCGCGCGTCAGCGAAAACCTGTCCGCCCAGCGGGACCATCTACGGCACACGAGCTGTGGAAGCGCTTCCTCAGCGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGCGATTAAGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAACATCCGCCGGGAGCAGACGGGTGGTGCAGATTTTACCGTCGAGGCGGAAGAAATAATCTTCCAATGCAGCGAAGCAAGCATGGCGGTGGCAGGAGGAAATAATCTGCGCAAGCGAGGCCAGTCCGGCAAGGGGTCGGGACGCAAGCAGCAGGCAGTGGACAGTGCGAAGCTAAACCGCATCATCGACATCTGGGCCGCCGGCAAGGGTGTCGTGTGTCTGCACGTGTTCCACAACATCATGCCGGCCGAGGCGTACACGCGCGAGGCGGCCATTATCGATGCGTACGGTGTGCAGAACCTGACGAATCTGAAGCGGGGCGACTACTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5380#0 CCGGTTGAAAACGAGCGACGAAACTGTTGTTTCAGAAAGAGAAGAGTGTCCACAACAATT 60
consensus_5380#1 ------------------------------------------------------------
consensus_5380#2 ------------------------------------------------------------
consensus_5380#0 TCCGGAATTAATTGAACAGAATGTCCCGGAGGAAATAGCTCCCACGGTTCAACCACAATT 120
consensus_5380#1 ------------------------------------------------------------
consensus_5380#2 ------------------------------------------------------------
consensus_5380#0 TATGGACATCGTACAAATAAGCGAAGAATACATCCACACGGACGACGAGGCGGGTGTGGT 180
consensus_5380#1 ------------------------------------------------------------
consensus_5380#2 ------------------------------------------------------------
consensus_5380#0 GTTTCGGGAAAAGCGAATGATTACCGCACCATCCACGATTCCCACCATTCAGGTAACATC 240
consensus_5380#1 ------------------------------------------------------------
consensus_5380#2 -----------------CAGAATCGNCACGAGGCTCGATCCGCGCGTCAGCGAAAACCTG 43
consensus_5380#0 GGAAATAGCTGAGCCGGTTTCAAACGTCCCGGGAAAAGGTCCACCATCAACAGCAAGACG 300
consensus_5380#1 ----------------------------------------------GCAGAATCGGCACG 14
consensus_5380#2 TCCGCCCAGCGGGACCATCTACGGCACACGAGCTGTGGAAGCGCT-TCCTCAGCGCCGTG 102
* * * *
consensus_5380#0 GAATCCGTCACTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACAC 360
consensus_5380#1 -AGGCCGTCGCTTACAAGCCTTTCTACAGCGGTCACGTTGCCTCCGCTTGATTACGACAC 73
consensus_5380#2 TTTTACGTCG---GAAAGGGTAAAAGCAGCCGCC-CGT-ACTGCCATCTG--TACGATGC 155
**** *** * **** * * *** * ** ** ***** *
consensus_5380#0 GGACGCGCTGCGCGCCGAGCTGACCA-CGTTCGGTG---AACCACCCGGCCCGATAACGA 416
consensus_5380#1 GGACGCGCTGCGCGCCGAGCTGACCA-CGTTCGGTG---AACCACCCGGCCCGATAACGA 129
consensus_5380#2 GATTAAGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAACATCCG--CCGGGAGCAG 213
* ***** * * *** * * ** * * ** ** ** *** *** * *
consensus_5380#0 GTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGACGCCATCCAGAACGAT 476
consensus_5380#1 GTAGCACCAAAAAACTGTACTTAAGAAAGCTGGTCAAATTGCGGCGCCATCCAGAACGAT 189
consensus_5380#2 ACGGGTGGTGCAGATTTTACCGTCGAG-GCGGAAGAAATAATCTTCCAATGCAG--CGAA 270
* * * * *** ** ** * **** * ** *** ***
consensus_5380#0 TGGAGAACGGAAGTGGAGCCAAAGCAAACCCTCAGCCAACTTTCTCCGTCGAGCTGGGCG 536
consensus_5380#1 TGGAGAACGGAAGTGGAGCCAAAGCAAAACCTCAGCCAACTTTCTCCGTCGAGCTGGGCG 249
consensus_5380#2 GCAAGCATGGCGGTGGCAGGAGGAAATAATCTGCGCAAGCGAGGCCAGTCCGGCAAGGGG 330
** * ** **** * * * ** ** * * * *** ** ** *
consensus_5380#0 CAACGGTAAGAA-AGGAGGATGTGTTCGAGGCGATCCTAGACC-----ATCAGAGTTTGG 590
consensus_5380#1 CAACGGTA-GAA-AGGAGGATGTGTTCGAGGCGATCCTAGACC-----ATCAGAGTTTGG 302
consensus_5380#2 TCGGGACGCAAGCAGCAGGCAGTGGACAGTGCGAAGCTAAACCGCATCATCGACATCTGG 390
* * ** *** *** * **** *** *** *** * ***
consensus_5380#0 AG-GACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTG 649
consensus_5380#1 AG-GACGAGATGGCTTCCGAATTCCAGTCCAGCTCCACCACCAAGGTGGCGCGCAACCTG 361
consensus_5380#2 GCCGCCGGCAAGGGTGTCGTGTGTCTGCACGTGTTCCACAACATCATGCCGGCCGAGGCG 450
* ** * ** * ** * * * * * * ** ** ** ** * * *
consensus_5380#0 CGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCG-CGCGTCAGCGA 708
consensus_5380#1 CGCGAGGGACACCTGAAGAAGAGCTTCGTCTATCTGCTGCTCGATCCG-CGCGTCAGCGA 420
consensus_5380#2 TACACGCGCGAGGCGGCCATTATCGATGCGTACGGTGTGCAGAACCTGACGAATCTGAAG 510
* * * * * * * * * ** *** * * * ** ** *
consensus_5380#0 AAACCTGTCCGCCCAGC------------------------------------------- 725
consensus_5380#1 AAACCTGTCCGCCCAGCGGGACCATCTAGCGGCACACGAGCTGTGGAAGCGCTTCCTCAG 480
consensus_5380#2 CGGGGCGACTACTAC--------------------------------------------- 525
* * *
consensus_5380#0 ------------------------------------------------------------
consensus_5380#1 CGCCGTGTTTTACGTCGGAAAGGGTAAAAGCAGCCGCCCGTACTGCCATCTGTACGATGC 540
consensus_5380#2 ------------------------------------------------------------
consensus_5380#0 ------------------------------------------------------------
consensus_5380#1 GATTAAGGCTGCACCACCAGCGGGAGAGCGCTGGCTGCGAAAGCATCCGCCGGGNAGCAG 600
consensus_5380#2 ------------------------------------------------------------
consensus_5380#0 ------------------------------------------------------------
consensus_5380#1 ACGGGTGGGGCAGGTTTTACCCGGTCGAAGGGCGGAANGAAATTTATTCTTTCCNAATTG 660
consensus_5380#2 ------------------------------------------------------------
consensus_5380#0 ------------------------------------------------------------
consensus_5380#1 CAGCGAAAGCAAAGGCATTGCCNGGCACGCGCGGTAGGACGGAAACTAATTCTGCGGCAG 720
consensus_5380#2 ------------------------------------------------------------
consensus_5380#0 --
consensus_5380#1 CC 722
consensus_5380#2 --
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||