These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 665 fasta sequence [CCTGTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGTTATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGTGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAA-GAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGTGCGTGATACACTCGCTAAGATACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAAGGGCCACTCCATGTGCGTTCGTGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGGGACTATATATATTGAATATATATATATTACTATTATTCATATGAGTAATACTAATAACAATAGTACTATT] [+] EMBL BX616792 [CCTGTTCGGCGATCGGTTTCCCATTCGTTTTACAATACTAAAGAAATGCATTATGCAAGTTATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGTGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAA GAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGTGCGTGATACACTCGCTAAGATACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAAGGGCCACTCCATGTGCGTTCGTGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGG ] [+] EMBL BX607022 [ CGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGTTATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGTGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAA GAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGTGCGTGATACACTCGCTAAGATACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAAGGGCCACTCCATGTGCGTTCGTGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGGGACTATATATATTGAATATATATATATTACTATTATTCATATGAGTAATACTAATAACAATAGTACTATT] [+] EMBL AL932589 [ gccccgaggCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGTTATGAGAGAGAGAGAGAGAGATGTGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTTGTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGTGCGTCTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAACGAAAATCAAACAAATCATATTTATTACGTATTGGGGAAGTGTAGGGAAAA ] consensusID : consensus_5383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [CCGCAAGCAATTTTATTTAGTGAAGCCTTCATCTAAAGTAAGCCTTCGTATAAACAGACACCTACACTTACACACACACACACATACATAGACATACGTACACACATACGACACTCTGCATCACGTTGGTTGGTTGCTCGTTTTATCGCGATTTTGTGTTCTGACTCCTTTCTGACTCCTGTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCACGTTATGTGCGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGATGAGCGTGATCCCTGTGGTGATGGACAGGCAAAGTAGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAGAAAAAGGCGAGGTTGTGTGGTTGCGATGGTGATGGCGCACTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGCGTGCGTGTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGGAGCGAAATGGTGGTGTGC] [+] EMBL BM637014 [CCGCAAGCAATTTTATTTAGTGAAGCCTTCATCTAAAGTAAGCCTTCGTATAAACAGACACCTACACTTACACACACACACACATACATAGACATACGTACACACATACGACACTCTGCATCACGTTGGTTGGTTGCTCGTTTTATCGCGATTTTGTGTTCTGACTCCTTTCTGACTCCTGTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCACGTTATGTGCGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGATGAGCGTGATCCCTGTGGTGATGGACAGGCAAAGTAGGGAGTTTTCCGCGTGGTAGCAGTAGTAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTATATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAGAAAAAGGCGAGGTTGTGTGGTTGCGATGGTGATGGCGCACTAGGAATGAATGTGACTAAGTAAGCAGCACTCAACACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGCGTGCGTGTGTGTGTGTGTCATAGCGATCAATCGAAGGGAAGGAGCGAAATGGTGGTGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5383#0 ------------------------------------------------------------ consensus_5383#1 CCGCAAGCAATTTTATTTAGTGAAGCCTTCATCTAAAGTAAGCCTTCGTATAAACAGACA 60 consensus_5383#0 ------------------------------------------------------------ consensus_5383#1 CCTACACTTACACACACACACACATACATAGACATACGTACACACATACGACACTCTGCA 120 consensus_5383#0 ---------------------------------------------------------CCT 3 consensus_5383#1 TCACGTTGGTTGGTTGCTCGTTTTATCGCGATTTTGTGTTCTGACTCCTTTCTGACTCCT 180 *** consensus_5383#0 GTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCAAGTTAT 63 consensus_5383#1 GTTCGGCGATCGGTTTCCCATTTGTTTTACAATACTAAAGAAATGCATTATGCACGTTAT 240 ****************************************************** ***** consensus_5383#0 G----------------------------------------AGAGAGAGAGAGAGAGATG 83 consensus_5383#1 GTGCGAGAGAGAGAGAGAGAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGATG 300 * ******************* consensus_5383#0 TGCGTGATCCCTGTGGTGATGGGCAGGCAAAGTGGGGAGTTTTCCGCGTGGTAGCAGTAG 143 consensus_5383#1 AGCGTGATCCCTGTGGTGATGGACAGGCAAAGTAGGGAGTTTTCCGCGTGGTAGCAGTAG 360 ********************* ********** ************************** consensus_5383#0 TAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTA 203 consensus_5383#1 TAGCTCGAAGCCGCAAAATGCAAATATATATAGTTAGGGAATGAGATGCGCGTGCGAGTA 420 ************************************************************ consensus_5383#0 TATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAAAAAAAGGCGAGGTT 263 consensus_5383#1 TATGTGTTTTAACTGTGAGTCCAGCAAAAGTCCAAACGAAGGAGAGAAAAAGGCGAGGTT 480 ********************************************* ************** consensus_5383#0 GTGTGGTTGCGATGGGAATGGCGCATTAGGAATGAATGTGACTAAGTAAGCAGCACTCAA 323 consensus_5383#1 GTGTGGTTGCGATGGTGATGGCGCACTAGGAATGAATGTGACTAAGTAAGCAGCACTCAA 540 *************** ******** ********************************** consensus_5383#0 CACTCTAGGAAGGACATGCATGAATTGTATGTGCGTG--TGCGTCTGTGTGTGTGTCATA 381 consensus_5383#1 CACTCTAGGAAGGACATGCATGAATTGTATGTGCGTGCGTGCGTGTGTGTGTGTGTCATA 600 ************************************* ***** *************** consensus_5383#0 GCGATCAATCGAAGGGAAGAAGCGAAATGGTGGTGTGCGCAAAAGAAAATCAAACAAATC 441 consensus_5383#1 GCGATCAATCGAAGGGAAGGAGCGAAATGGTGGTGTGC---------------------- 638 ******************* ****************** consensus_5383#0 ATATTTATTACGTATTGGGGAAGTGTAGGGAAAAGGTGTGCGTGATACACTCGCTAAGAT 501 consensus_5383#1 ------------------------------------------------------------ consensus_5383#0 ACCGTGCCACACAACTGCGTCACTTGGTTGGTCGGTCAAGGGCCACTCCATGTGCGTTCG 561 consensus_5383#1 ------------------------------------------------------------ consensus_5383#0 TGTGTGTGTGTGTGTGTGTGCAGTTGTGGAACGGGACTATATATATTGAATATATATATA 621 consensus_5383#1 ------------------------------------------------------------ consensus_5383#0 TTACTATTATTCATATGAGTAATACTAATAACAATAGTACTATT 665 consensus_5383#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||