These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence [GGCCAGATGGCGAGGAGAAAAGAAACATAGTGCGATCGTGGCCTCACATTACAACAAGCTGGAGGATCGTGGACTGGTTGCTCG-GAAAAAGTCGAACATCTACTTTATGCGCAACTTCAACAACTGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCAAATGGGCCAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGATGCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAGCTGCACCTGGTGAGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTCGTTCAAGCAGGCGGACTGCATGTTTAAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTACTTCATCGGCACGATGCCGGACGCGAACGAAATCATGAAGCGGCAGCGAAGGGCCATGTCGGACACGTTCGGCAACGATATCTACCGCATCCAGTTCCTGTGCGATACGGACAATCCGCCGCTGTTCGGGGGCCAAGGTACAACTTTCAGCTCGATGAGGGTGGTGGACTGTCCCCGAGTTTCTGGTCCACTTTCCCACGTTCGAAAAGGCTTGCGCT-AAGCACGGTTTGCGGGCTTGTGG-GAGCAAGGGAAACCGGGTTCGAAAGAAGTTGTTTGGACGGAAAAACACAGGNAGGCCGGGAAAAGCCAGGGACACTGNTTGGGGAGCAAGAATGNCCAGGGCNGCTAAGAAACATTTGTATCCCCAGACCANACCGGAAACCGGGGCCGCGGTTCACCCGGGGGGACCACCCCACGCGGAAAAAGCCCGGAACACAGGATTNANGCCNTGCCGAGGAGATNCACGAG] [+] EMBL BX467616 [GGCCAGATGGCGAGGAGAAAAGAAACATAGTGCGATCGTGGCCTCACATTACAACAAGCTGGAGGATCGTGGACTGGTTGCTCG GAAAAAGTCGAACATCTACTTTATGCGCAACTTCAACAACTGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCAAATGGGCCAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGATGCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAGCTGCACCTGGTGAGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTCGTTCAAGCAGGCGGACTGCATGTTTAAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTACTTCATCGGCACGATGCCGGACGCGAACGAAATCATGAAGCGGCAGCGAAGGGCCATGTCGGACACGTTCGGCAACGATATCTACCGCATCCAGTTCCTGTGCGATACGGACAATCCGCCGCTGTTCGGGGGCCAAGGTACAACTTTCAGCTCGATGAGGGTGGTGGACTGTCCCCGAGTTTCTGGTCCACTTTCCCACGTTCGAAAAGGCTTGCGCT AAGCACGGTTTGCGGGCTTGTGG GAGCAAGGGAAACCGGGTTCGAAAGAAGTTGTTTGGACGGAAAAACACAGGNAGGCCGGGAAAAGCCAGGGACACTGNTTGGGGAGCAAGAATGNCCAGGGCNGCTAAGAAACATTTGTATCCCCAGACCANACCGGAAACCGGGGCCGCGGTTCACCCGGGGGGACCACCCCACGCGGAAAAAGCCCGGAACACAGGATTNANGCCNTGCCGAGGAGATNCACGAG] [+] EMBL BM602992 [ AGTGCGATCGTGGCCTCGCATTACAACAAGCTGGAGGATCGTGGACTGGTTGCTCGCGAAAAAGACCAACATCTACTTTATGCGCAACTTCAACAACTGGATCACAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAAGGCGGCGATCTGATCAAATGGGCTAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGATGCGACCCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAG ] [+] EMBL BM579047 [ ccgAACTGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCAAATGGGCCAACGCGAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACAATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGATGCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAGCTGCACCTGGTGAGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTCGTTCAAGCAGGCGGACTGCATGTTTAAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTACTTCATCGGCACGATGCCGGACGCGAACGAAATCATGAAGCGGCAGCGAAGGGCCATGTCGGACACGTTCGGCAACGATATCTACCGCATCCAGTTCCTGTGCGATACGGACAATCCGCCGCTGTTC GGGGCCAA GTACAACTTTCAGCTCGATGA GGTGGTGGACTGT CCCGAGTTTCTGGTCCACTTTCCCACGTTCGAAAA GCTGGCGCTGAAGCACGGTTTGC GGCTGGTGGAGAG ] consensusID : consensus_5384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [TCGCCAGTAGACGCAGAGTCGTGCACAGTATTTATTAGTATTTTTATTATTTAATCGTAGTTTTGCCAGTATNCCCAATCATGTCNGACTCCGAAGAAAGCAGTACGGCCCGACGCACACCACAGATACGGAGGAACAAACGCCCAGAGGGGGGCGAAAATGGAGAAAAGAAACATATGCGATCGTGGCTCACATTTACAACCAAGCTTGGAGGATCGTGGACTGGTTGCTCCGAAAAAGTTGAACATCTAATTTATGCGCCACTTCCAACAACTGGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCACAATGGGCCAACGCGCAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAG] [+] EMBL AL932591 [TCGCCAGTAGACGCAGAGTCGTGCACAGTATTTATTAGTATTTTTATTATTTAATCGTAGTTTTGCCAGTATNCCCAATCATGTCNGACTCCGAAGAAAGCAGTACGGCCCGACGCACACCACAGATACGGAGGAACAAACGCCCAGAGGGGGGCGAAAATGGAGAAAAGAAACATATGCGATCGTGGCTCACATTTACAACCAAGCTTGGAGGATCGTGGACTGGTTGCTCCGAAAAAGTTGAACATCTAATTTATGCGCCACTTCCAACAACTGGGATCAAAAGCGTGGTCATAGACAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGATATGTGCTGCGGGAAGGGCGGCGATCTGATCACAATGGGCCAACGCGCAACGTGACGCACCTGATCTGCACGGACATTGCGCAGGTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5384#0 ------------------------------------------------------------ consensus_5384#1 TCGCCAGTAGACGCAGAGTCGTGCACAGTATTTATTAGTATTTTTATTATTTAATCGTAG 60 consensus_5384#0 ------------------------------------------------------------ consensus_5384#1 TTTTGCCAGTATNCCCAATCATGTCNGACTCCGAAGAAAGCAGTACGGCCCGACGCACAC 120 consensus_5384#0 ---------------------GGCCAGATGGCGA-------GGAGAAAAGAAACATAGTG 32 consensus_5384#1 CACAGATACGGAGGAACAAACGCCCAGAGGGGGGCGAAAATGGAGAAAAGAAACATA-TG 179 * ***** ** * **************** ** consensus_5384#0 CGATCGTGGCCTCACATT-ACAAC-AAGCT-GGAGGATCGTGGACTGGTTGCTCGGAAAA 89 consensus_5384#1 CGATCGTGGC-TCACATTTACAACCAAGCTTGGAGGATCGTGGACTGGTTGCTCCGAAAA 238 ********** ******* ***** ***** *********************** ***** consensus_5384#0 AGTCGAACATCTACTTTATGCGCAACTTC-AACAACTGG-ATCAAAAGCGTGGTCATAGA 147 consensus_5384#1 AGTTGAACATCTAATTTATGCGCCACTTCCAACAACTGGGATCAAAAGCGTGGTCATAGA 298 *** ********* ********* ***** ********* ******************** consensus_5384#0 CAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGA 207 consensus_5384#1 CAAGTACACCACGCTGGTGAAGGGCAGGACACCGCTCGGCTCACCGTTCCGGGTGTTGGA 358 ************************************************************ consensus_5384#0 TATGTGCTGCGGGAAGGGCGGCGATCTGATCA-AATGGGCCAACGCG-AACGTGACGCAC 265 consensus_5384#1 TATGTGCTGCGGGAAGGGCGGCGATCTGATCACAATGGGCCAACGCGCAACGTGACGCAC 418 ******************************** ************** ************ consensus_5384#0 CTGATCTGCACGGACATTGCGCAGGTCAGCCTGGAGCAGTGCGAGAATCGCTTCAACACA 325 consensus_5384#1 CTGATCTGCACGGACATTGCGCAGGTCAG------------------------------- 447 ***************************** consensus_5384#0 ATGGACCAATGGTCGCGGGACAGTCAGCGCCGGCCGAAGGTGGAGTTTTTCGCGGCCGAT 385 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 GCGACGCTGCAGCAGCTCCGCACCAAGTACCGCGATCCCTCGATCAAGCTGCACCTGGTG 445 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 AGCTGCCAGTTTGCGTTTCACTACTCGTTCGAGTCGTTCAAGCAGGCGGACTGCATGTTT 505 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 AAGAACGCGGCCGAATGTCTGGAGGAGGGCTTCTACTTCATCGGCACGATGCCGGACGCG 565 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 AACGAAATCATGAAGCGGCAGCGAAGGGCCATGTCGGACACGTTCGGCAACGATATCTAC 625 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 CGCATCCAGTTCCTGTGCGATACGGACAATCCGCCGCTGTTCGGGGGCCAAGGTACAACT 685 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 TTCAGCTCGATGAGGGTGGTGGACTGTCCCCGAGTTTCTGGTCCACTTTCCCACGTTCGA 745 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 AAAGGCTTGCGCTAAGCACGGTTTGCGGGCTTGTGGGAGCAAGGGAAACCGGGTTCGAAA 805 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 GAAGTTGTTTGGACGGAAAAACACAGGNAGGCCGGGAAAAGCCAGGGACACTGNTTGGGG 865 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 AGCAAGAATGNCCAGGGCNGCTAAGAAACATTTGTATCCCCAGACCANACCGGAAACCGG 925 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 GGCCGCGGTTCACCCGGGGGGACCACCCCACGCGGAAAAAGCCCGGAACACAGGATTNAN 985 consensus_5384#1 ------------------------------------------------------------ consensus_5384#0 GCCNTGCCGAGGAGATNCACGAG 1008 consensus_5384#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||