These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 807 fasta sequence [TGTTCCAGACANTGCCATCTACGTTGACATTGGAAGCCACCAAAAAGCGGAAGAGCTTCCACATATCAAAATATTCAAGTACACTGGCTCGATTAACTTTGCGAACAAAACTAATTTCAAGAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGAATTAGTGACTTANGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACTCAGATTCCTCCAAACAGAGAATACTTATCTTTGCTCCTAGGTTTACGAAAAAGCAACAAGTACTTCATTCTGGTGTTTCGAAGATTGATTACATAGGCAATATTCTTGATGAATCAGGATAAGCAATCCCCTTACGAACAGGTTAAACCTCACGGGCTTTCTAGAGTCTCGACTATTTTAGCCGGGTATAAGCATCGTTTTTTGACG] [+] EMBL BX627055 [TGTTCCAGACANTGCCATCTACGTTGACATTGGAAGCCACCAAAAAGCGGAAGAGCTTCCACATATCAAAATATTCAAGTACACTGGCTCGATTAACTTTGCGAACAAAACTAATTTCAAGAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGAATTAGTGACTTANGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACT ] [+] EMBL BX628385 [ CACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGAATTAGTGACTTAGGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACTCAGATTCCTCCAAACAGAGAATACTTATCTTTGCTCCTAGGTTTACGAAAAAGCAACAAGTACTTCATTCTGGTGTTTCGAAGATTGATTACATAGGCAATATTCTTGATGAATCAGGATAAGCAATCCCCTTACGAACAGGTTAAACCTCACGGGCTTTCTAGAGTCTCGACTATTTTAGCCGGGTATAAGCATCGTTTTTTGACG] consensusID : consensus_5386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 443 fasta sequence [GAATCGCCCGAGGTATTACTTTGCGAACAGACTAATTCAGAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCAAGTGCCTTCTACGAACAAATCGAA] [+] EMBL AL932622 [GAATCGCCCGAGGTATTACTTTGCGAACAGACTAATTCAGAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATATAATATAATGCAAAATTTCAAGTGCCTTCTACGAACAAATCGAA] [+] EMBL BX603414 [ CTCGATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAGCGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGAAAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCTGCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGTTATCTTCGCTCGGGGAGATGATTCATCCGTGTAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5386#0 TGTTCCAGACANTGCCATCTACGTTGACATTGGAAGCCACCAAAAAGCGGAAGAGCTTCC 60 consensus_5386#1 ------------------------------------------------------------ consensus_5386#0 ACATATCAAAATATTCAAGTACACTGGCTCGATTAACTTTGCGAACAAAACTAATTTCAA 120 consensus_5386#1 ---------------GAATCGCCCGAGGT--ATTA-CTTTGCGAACAGA-CTAATTC--A 39 ** * * * * **** *********** * ****** * consensus_5386#0 GAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCG 180 consensus_5386#1 GAAAGCTCTATACAAGGAAACCAAAGTTCATCAACGTGCCAATGTTTCTCTGGTCCCTCG 99 ************************************************************ consensus_5386#0 ATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAG 240 consensus_5386#1 ATATAATGGCGAAACCACAGGTCTACAGTCCACCAAAACAGTCATTATCGATCTGAGTAG 159 ************************************************************ consensus_5386#0 CGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGA 300 consensus_5386#1 CGTACCACATGTTGATACTGCTGCGTGTAAAATGTTAACAGAAGTTAAAACCAATTTGGA 219 ************************************************************ consensus_5386#0 AAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCT 360 consensus_5386#1 AAATCTGAGCATAATGCTGCTTTTGGCCACTCCAGCCGACTGCGTATATGATGCATTGCT 279 ************************************************************ consensus_5386#0 GCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGT 420 consensus_5386#1 GCATGCGGAATCGATAGGAGAAGGAGGCTTTAACATTTTCCCCACCATACATGACGCTGT 339 ************************************************************ consensus_5386#0 TATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATA 480 consensus_5386#1 TATCTTCGCTCGGGGAGATGATTCATCCGTGTAGCGTGTGTTTGTAAAAATGACTTAATA 399 ************************************************************ consensus_5386#0 TAATATAATGCAAAATTTCATGTGCCTTCTACGAACAAATCGAAGCACTAAGCGATTGGA 540 consensus_5386#1 TAATATAATGCAAAATTTCAAGTGCCTTCTACGAACAAATCGAA---------------- 443 ******************** *********************** consensus_5386#0 ATTAGTGACTTANGTATCAAACAAATCATGTGATAAGTTTGCACCAACACCACCGTTACT 600 consensus_5386#1 ------------------------------------------------------------ consensus_5386#0 CAGATTCCTCCAAACAGAGAATACTTATCTTTGCTCCTAGGTTTACGAAAAAGCAACAAG 660 consensus_5386#1 ------------------------------------------------------------ consensus_5386#0 TACTTCATTCTGGTGTTTCGAAGATTGATTACATAGGCAATATTCTTGATGAATCAGGAT 720 consensus_5386#1 ------------------------------------------------------------ consensus_5386#0 AAGCAATCCCCTTACGAACAGGTTAAACCTCACGGGCTTTCTAGAGTCTCGACTATTTTA 780 consensus_5386#1 ------------------------------------------------------------ consensus_5386#0 GCCGGGTATAAGCATCGTTTTTTGACG 807 consensus_5386#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||