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Anopheles gambiae
cluster # 5388 cluster # 5388       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5388#0 length = 774 sequences # 1  
consensus_5388#1 length = 720 sequences # 2  
consensus_5388#2 length = 491 sequences # 1  

consensusID : consensus_5388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 774
fasta sequence
                              [CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAACAAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTCGTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAACTATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTTCTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNCCCTATCTATTGCT]

[+] EMBL BX627667             [CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAACAAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTCGTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAACTATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTTCTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNCCCTATCTATTGCT]


>consensus_5388#0 CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGG CTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTG AAACATAAAACAAAACAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAG ATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATT TCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAG CTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATC GAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACAC GGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCG CTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAACAAAACAAAATGTGTTATGA AAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTCGTGGATGTACAGAAAATGG CATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAACTATAAAGAAATGGGCTAAT AATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTTCTGGTTTTGGCAACACCCA GCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNCCCTATCTATTGCT



consensusID : consensus_5388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 720
fasta sequence
                              [ACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACG]

[+] EMBL BX611035             [ACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACG]
[+] EMBL BX613182             [                                                                                                                                                                  AGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_5388#1 ACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAA GAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGA CCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTG GAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATAT TAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAATGGCTGTCAATCT TAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAA CAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAA CAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCAT TTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGAGCTTTTGCTTGGCTT GGATGACACCTCTTCGGTATTTAAGGTGCTGAAAGAGAGCTTTATCGAAGGCTGTAATGG GGGCAGTGCGGAAGATCCCAGATTGTTAGCTACCTATACGCACACGGTGTAGTCTGAACA GTGCAAGATTGCAAGATAATGAAGTATCTAAACATTTGCCCATCGCTCCTGCTGGACACG



consensusID : consensus_5388#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence
                              [AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGATCACACCGGAG]

[+] EMBL BX609493             [AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGTAGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAAGTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGTAGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGATCACACCGGAG]


>consensus_5388#2 AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGT AGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAA GTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGT AGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA AATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTA AAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATATATACGCTCACCGGTAACA GATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAGCATACTGTGTACAATTAT TTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATCTTACTCAAACGTATGCGA TCACACCGGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5388#1      ---------------------------------ACCAGGGCACGGGAAAAACCGAACAGT 27
consensus_5388#2      AAAACAAAAAATATCTAATGATTGCGAGAGGCTACCAGGGCACGGGAAAAACCGAACAGT 60
consensus_5388#0      ------------------------------------------------------------
                                                                                  

consensus_5388#1      AGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAA 87
consensus_5388#2      AGGGGTATATATCTAATTCTGGAAAAAAAGAAAGAAAGAAAAAAACATGCAAGGGAAAAA 120
consensus_5388#0      ------------------------------------------------------------
                                                                                  

consensus_5388#1      GTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGT 147
consensus_5388#2      GTAAATAGTGCAAACGTTCAGTTGCAAGAGAGACCAAAGCACAGCAACGCGAAGACGCGT 180
consensus_5388#0      ------------------------------------------------------------
                                                                                  

consensus_5388#1      AGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 207
consensus_5388#2      AGACACTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 240
consensus_5388#0      -----CTTGCAGGCCAGGGCAAGGTACGAACTGGAACTGGGGACTGGGAAATCCTTGCAA 55
                           *******************************************************

consensus_5388#1      AATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTA 267
consensus_5388#2      AATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAAGGGTAATGCAGTGCAGTA 300
consensus_5388#0      AATGGCTGTCAATCTTAGTTGTTAATCTACTATTAGCTTTAAGGGTAATGCAGTGCAGTA 115
                      ***************************** ******************************

consensus_5388#1      AAGTGAAACATAAAACAAAATGGCTGTCAATCTTAGTTGTTAATCTAATATTAGCTTTAA 327
consensus_5388#2      AAGTGAAACATAAAACAAAA---------------------------------------- 320
consensus_5388#0      AAGTGAAACATAAAACAAAAC--------------------------------------- 136
                      ********************                                        

consensus_5388#1      GGGTAATGCAGTGCAGTAAAGTGAAACATAAAACAAAACAAAAAATAGGAAAGTGCATAT 387
consensus_5388#2      --------------------------------------CAAAAAATAGGAAAGTGCATAT 342
consensus_5388#0      -----------------------------------AAACAAAAAATAGGAAAGTGCATAT 161
                                                            **********************

consensus_5388#1      ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 447
consensus_5388#2      ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 402
consensus_5388#0      ATACGCTCACCGGTAACAGATGATGTGACAAAACAATGTTAGAACTACAATATTTATAAG 221
                      ************************************************************

consensus_5388#1      CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 507
consensus_5388#2      CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 462
consensus_5388#0      CATACTGTGTACAATTATTTCGTTAGGAACCATTTGCCGAGTTGAACATTGATATTTATC 281
                      ************************************************************

consensus_5388#1      TTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGT 567
consensus_5388#2      TTACTCAAACGTATGCGA--TCACACCGGAG----------------------------- 491
consensus_5388#0      TTACTCAAACGTATGCGAGCTTTTGCTTGGCTTGGATGACACCTCTTCGGTATTTAAGGT 341
                      ******************  *    *  *                               

consensus_5388#1      GCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGG-CAGTGCGGAAGATCCCAGATTGT 626
consensus_5388#2      ------------------------------------------------------------
consensus_5388#0      GCTGAAAGAGAGCTTTATCGAAGGCTGTAATGGGGGGCAGTGCGGAAGATCCCAGATTGT 401
                                                                                  

consensus_5388#1      TAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTA 686
consensus_5388#2      ------------------------------------------------------------
consensus_5388#0      TAGCTACCTATACGCACACGGTGTAGTCTGAACAGTGCAAGATTGCAAGATAATGAAGTA 461
                                                                                  

consensus_5388#1      TCTAAACATTTGCCCATCGCTCCTGCTGGACACG-------------------------- 720
consensus_5388#2      ------------------------------------------------------------
consensus_5388#0      TCTAAACATTTGCCCATCGCTCCTGCTGGACACGTGTTTTAGTTTTCGTTGCGCAAAAAC 521
                                                                                  

consensus_5388#1      ------------------------------------------------------------
consensus_5388#2      ------------------------------------------------------------
consensus_5388#0      AAAACAAAATGTGTTATGAAAATGGTGAACCGTTATAAAGCTTTTCTTAGCTTCCGTTTC 581
                                                                                  

consensus_5388#1      ------------------------------------------------------------
consensus_5388#2      ------------------------------------------------------------
consensus_5388#0      GTGGATGTACAGAAAATGGCATCCCGTATTGACAGTATTGTTGCATGCATCGCGGTAAAC 641
                                                                                  

consensus_5388#1      ------------------------------------------------------------
consensus_5388#2      ------------------------------------------------------------
consensus_5388#0      TATAAAGAAATGGGCTAATAATAGAAGCCTAGCATAATGTCTCATAAATTGCTTCTTCTT 701
                                                                                  

consensus_5388#1      ------------------------------------------------------------
consensus_5388#2      ------------------------------------------------------------
consensus_5388#0      CTGGTTTTGGCAACACCCAGCAACGAAACGACTTTGCAGACTATCTGCAGGCCATGACNC 761
                                                                                  

consensus_5388#1      -------------
consensus_5388#2      -------------
consensus_5388#0      CCTATCTATTGCT 774
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)