These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5389#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 852 fasta sequence [AGGCCAAGAATTCGGCACGATTGGGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTGCGCACATCCAGCTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGCATCGAGAACATACGGTTCGTGAAGGGCCGGCTGGAGGACACGGAGCTGCCGGTGGAAAAGGTCGACATTATCGTGTCCGAGTGGATGGGCTACTTCCTGCTGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTACCTGCGCGAGGGAGGCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGCGACCTCGAGCGGCACAACGAGTTCATCGGCTTCTGGAAGAACGTGTACGGGTTCGATATGTCGTGCATGAAGAAGGAGGTGCTGCGGGAAGCGACGGTCGAGGTGTGCAAACCGGAGCACATCATTACGAACGCGAACATCATTGCCAACTTCGACCTGATGGAGGTCGATGTCGACTGTCCGAACTTTAGCTACGACTTCGAGCTGAAGGTGAAACGGGACACACAGCTGACCGCCATCATCGGATACTTTGACACGTTCTTCGAGCTGCCGGAGCACATCGAATTTTCCACCTCGCCGTACTCGCGGCCGACCCACTGGAAGCAGACCATTTTCTACCTGGANGAACCGGTCCCGGTGCGGGANGGGCAA] [+] EMBL BX468491 [AGGCCAAGAATTCGGCACGATTGGGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTGCGCACATCCAGCTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGCATCGAGAACATACGGTTCGTGAAGGGCCGGCTGGAGGACACGGAGCTGCCGGTGGAAAAGGTCGACATTATCGTGTCCGAGTGGATGGGCTACTTCCTGCTGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTACCTGCGCGAGGGAGGCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGCGACCTCGAGCGGCACAACGA ] [+] EMBL BX625449 [ AGGTGCGCACATCCAGCTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGATGTTTGCATCGAA GGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGCATCGAGAACATACGGTTCGTGAAGGGCCGGCTGGAGGACACGGAGCTGCCGGTGGAAAACGTCGACATTATCGTGTCCGAGTGGATGGGCTACTTCCTGCTGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTACCT CGCGAGGGTGGCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGCGACCTCGAGCGGCACAACGAGTTCATCGGCTTCTGGAAGAACGTGTACGGGTTCGATATGTCGTGCATGAAGAAGGAGGTGCTGCGGGAAGCGACGGTCGAGGTGTGCAAACCGGAGCACATCATTACGAACGCGAACATCATTGCCAACTTCGACCTGATGGAGGTCGATGTCGACTGTCCGAACTTTAGCTACGACTTCGAGCTGAAGGTGAAACGGGACACACAGCTGACCGCCATCATCGGATACTTTGACACGTTCTTCGAGCTGCCGGAGCACATCGAATTTTCCACCTCGCCGTACTCGCGGCCGACCCACTGGAAGCAGACCATTTTCTACCTGGANGAACCGGTCCCGGTGCGGGANGGGCAA] consensusID : consensus_5389#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [GAATCGCCACGAGNTGTAGCACGGTGGGGTGTCGGGGNGAGAAAGAAACCGGCAGTGACCTCGGTGATACGATGACGCTTACCACCGACCAGTACCGAAAATTGCAGGGGCATCATTAACGATCTGTCGGCACAGCTGCGGGAGAAGGAGAATCTGCTTCAGCATGCCGCCAGCAGCATCGAAAAGATGAAGGAAAGCTTTCGCAACGTGCTGGCGGATCAGCAGCAGCAGCAGCAACCGAACGGGAAGGAAAATGGGAAAGCCGGTACGGAGGAGGGTGCCGAGGGCGATAAAAAGCTTGAACAGATCAAGCGAAAGCTCGAGCATTGCGTGAGCAGCGTTTCGGTCGATGACGATCAGAGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTGCGCACATCCAGCGTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGTTAGATCTGGGCTGTGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACGATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGGATCGAGGAACATACGGTTCGTGAAAGGCCGGCTGGAGGACACGGAGGCTGTCGGTGGNAAAAGGTCGACATTATCGTGTCGAAGTGGATGGGCTAACTT] [+] EMBL BX469197 [GAATCGCCACGAGNTGTAGCACGGTGGGGTGTCGGGGNGAGAAAGAAACCGGCAGTGACCTCGGTGATACGATGACGCTTACCACCGACCAGTACCGAAAATTGCAGGGGCATCATTAACGATCTGTCGGCACAGCTGCGGGAGAAGGAGAATCTGCTTCAGCATGCCGCCAGCAGCATCGAAAAGATGAAGGAAAGCTTTCGCAACGTGCTGGCGGATCAGCAGCAGCAGCAGCAACCGAACGGGAAGGAAAATGGGAAAGCCGGTACGGAGGAGGGTGCCGAGGGCGATAAAAAGCTTGAACAGATCAAGCGAAAGCTCGAGCATTGCGTGAGCAGCGTTTCGGTCGATGACGATCAGAGCTATTTCAACACGTACTCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGTGCGCACATCCAGCGTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAACCGTGTTAGATCTGGGCTGTGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGCGGGAGCGAAGGAGGTCATCTCGGTCGATCAGTCCGACGATCATCTACCAGGCGATGGACATTGTGCGGAAGAACAGGATCGAGGAACATACGGTTCGTGAAAGGCCGGCTGGAGGACACGGAGGCTGTCGGTGGNAAAAGGTCGACATTATCGTGTCGAAGTGGATGGGCTAACTT] consensusID : consensus_5389#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [TCGNCCAGNGTATCACACTTTGGCATCATCACGATATTTGAGCGACGAGGTGCGCACATCCACTACCGCGATGCGATCCTGCGGAATGCCGACATANTTAAAGNTAAAAACGTGCTAAATCTTGGCTGCGGTACGGCCATCCTGTCGATGTTGCATCAAGCGGGAGCNAAGAGGNCATCTCCGCGACACGATTATCTAACCACGATGGACATTGTGCGGAAGAACAGCATCAAACNTACNGGTCGTGAAAGGCCCGCTGGAGTGACACGGAGCTGCCGCGTGTGAAAAGTGTCGACATTATCCGTGTCCCGAGGTTTGATTTGGCGTACATTCCCTGGCGTTGGTTCCGAANGGGGCNCACTTTAATTGTGAACAACGCGGTTGATTTATTNCCCCGNCAAGCCACGTACCTGCGCGAGAGGGTGTGGGCTCCATAATTTTGGCCGAAAACCGGGTTGCGAAACATTNACCAATTCGGCCCGGGGTAACGGGGGAAACCTCCGAAGGCNGGG] [+] EMBL AL932670 [TCGNCCAGNGTATCACACTTTGGCATCATCACGATATTTGAGCGACGAGGTGCGCACATCCACTACCGCGATGCGATCCTGCGGAATGCCGACATANTTAAAGNTAAAAACGTGCTAAATCTTGGCTGCGGTACGGCCATCCTGTCGATGTTGCATCAAGCGGGAGCNAAGAGGNCATCTCCGCGACACGATTATCTAACCACGATGGACATTGTGCGGAAGAACAGCATCAAACNTACNGGTCGTGAAAGGCCCGCTGGAGTGACACGGAGCTGCCGCGTGTGAAAAGTGTCGACATTATCCGTGTCCCGAGGTTTGATTTGGCGTACATTCCCTGGCGTTGGTTCCGAANGGGGCNCACTTTAATTGTGAACAACGCGGTTGATTTATTNCCCCGNCAAGCCACGTACCTGCGCGAGAGGGTGTGGGCTCCATAATTTTGGCCGAAAACCGGGTTGCGAAACATTNACCAATTCGGCCCGGGGTAACGGGGGAAACCTCCGAAGGCNGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5389#0 ------------------------------------------------------------ consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 GAATCGCCACGAGNTGTAGCACGGTGGGGTGTCGGGGNGAGAAAGAAACCGGCAGTGACC 60 consensus_5389#0 ------------------------------------------------------------ consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 TCGGTGATACGATGACGCTTACCACCGACCAGTACCGAAAATTGCAGGGGCATCATTAAC 120 consensus_5389#0 ------------------------------------------------------------ consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 GATCTGTCGGCACAGCTGCGGGAGAAGGAGAATCTGCTTCAGCATGCCGCCAGCAGCATC 180 consensus_5389#0 ------------------------------------------------------------ consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 GAAAAGATGAAGGAAAGCTTTCGCAACGTGCTGGCGGATCAGCAGCAGCAGCAGCAACCG 240 consensus_5389#0 ------------------------------------------------------------ consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 AACGGGAAGGAAAATGGGAAAGCCGGTACGGAGGAGGGTGCCGAGGGCGATAAAAAGCTT 300 consensus_5389#0 ------------------------------------AGGCCAAGAATTCGGCACGATTGG 24 consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 GAACAGATCAAGCGAAAGCTCGAGCATTGCGTGAGCAGCGTTTCGGTCGATGACGATCAG 360 consensus_5389#0 -GCTATTTCAACACGTAC-TCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGT 82 consensus_5389#2 -------TCGNCCAGNGTATCACACTTTGGCATC-ATCACGATAT-TTGAGCGACGAGGT 51 consensus_5389#1 AGCTATTTCAACACGTAC-TCACACTTTGGCATCCATCACGATATGTTGAGCGACGAGGT 419 ** * * *************** ********** ************** consensus_5389#0 GCGCACATCCAGC-TACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAA 141 consensus_5389#2 GCGCACATCCA-C-TACCGCGATGCGATCCTGCGGAATGCCGACATANTTAAAGNTAAAA 109 consensus_5389#1 GCGCACATCCAGCGTACCGCGATGCGATCCTGCGGAATGCCGACATAGTGAAGGATAAAA 479 *********** * ********************************* * ** * ***** consensus_5389#0 CCGTGCTAGATCTGGGCTGCGGTACGGCCATCCTGTCGATGTTTGCATCGAAGGGCGGGA 201 consensus_5389#2 ACGTGCTAAATCTTGGCTGCGGTACGGCCATCCTGTCGATGTT-GCATCAA---GCGGGA 165 consensus_5389#1 CCGTGTTAGATCTGGGCTGTGGTACGGCCATCCTGTCGATGTTTGCATCGAAG-GCGGGA 538 **** ** **** ***** *********************** ***** * ****** consensus_5389#0 GCGAAGGAGGTCATCTCGGTCGATCAGTCCGAC-ATCATCTACCAGGCGATGGACATTGT 260 consensus_5389#2 GCNAAG-AGGNCATCTCCG-----CGACACGA---TTATCTAACCA-CGATGGACATTGT 215 consensus_5389#1 GCGAAGGAGGTCATCTCGGTCGATCAGTCCGACGATCATCTACCAGGCGATGGACATTGT 598 ** *** *** ****** * * *** * ***** * ************* consensus_5389#0 GCGGAAGAACAGCATCGAG-AACATACGGTTCGTGAAGGGCCGGCTGGAG-GACACGGAG 318 consensus_5389#2 GCGGAAGAACAGCATCA---AACNTACNGGTCGTGAAAGGCCCGCTGGAGTGACACGGAG 272 consensus_5389#1 GCGGAAGAACAGGATCGAGGAACATACGGTTCGTGAAAGGCCGGCTGGAG-GACACGGAG 657 ************ *** *** *** * ******* **** ******* ********* consensus_5389#0 -CTGCCG---GTGGAAAAGGTCGACATTATC-GTGTCCGAGTGGATGGGCTACTTCCTGC 373 consensus_5389#2 -CTGCCGCGTGTGAAAAGTGTCGACATTATCCGTGTCCCGAGGTTTGATTTGG--CGTAC 329 consensus_5389#1 GCTGTCGG--TGGNAAAAGGTCGACATTATC-GTGTCGAAGTGGATGGGCTAACTT---- 710 *** ** * *** ************ ***** * ** * consensus_5389#0 TGTTCGAGGGCATGATGGACAGCGTGATTTATGCCCGCAAGCAGTACCTGCGCGAGGGAG 433 consensus_5389#2 ATTCCCTGGCGTTGGTTCCGAANGGGGCNCA---CTTTAATTGTGAACAACGCGGTTGAT 386 consensus_5389#1 ------------------------------------------------------------ consensus_5389#0 GCCTCATATTGCCGAACCGCTGCAACATTAGCATCGCCGGGTACGGCGACCTCGAGCGGC 493 consensus_5389#2 TTATTNCCCCGNCAAGCCAC----GTACCTGCGCGAGAGGGTGTGGGCTCCATAATTTTG 442 consensus_5389#1 ------------------------------------------------------------ consensus_5389#0 ACAACGAGTTCATCGGCTTCTGGAAGAACGTGTACGGGTTCGATATGTCGTGCATGAAGA 553 consensus_5389#2 GCCGAAA----ACCGGGTTGCGAAA---CATTNACCAATTCGGCCCGGGGT------AAC 489 consensus_5389#1 ------------------------------------------------------------ consensus_5389#0 AGGAGGTGCTGCGGGAAGCGACGGTCGAGGTGTGCAAACCGGAGCACATCATTACGAACG 613 consensus_5389#2 GGGGGAAACCTCCGAAGGCNGGG------------------------------------- 512 consensus_5389#1 ------------------------------------------------------------ consensus_5389#0 CGAACATCATTGCCAACTTCGACCTGATGGAGGTCGATGTCGACTGTCCGAACTTTAGCT 673 consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 ------------------------------------------------------------ consensus_5389#0 ACGACTTCGAGCTGAAGGTGAAACGGGACACACAGCTGACCGCCATCATCGGATACTTTG 733 consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 ------------------------------------------------------------ consensus_5389#0 ACACGTTCTTCGAGCTGCCGGAGCACATCGAATTTTCCACCTCGCCGTACTCGCGGCCGA 793 consensus_5389#2 ------------------------------------------------------------ consensus_5389#1 ------------------------------------------------------------ consensus_5389#0 CCCACTGGAAGCAGACCATTTTCTACCTGGANGAACCGGTCCCGGTGCGGGANGGGCAA 852 consensus_5389#2 ----------------------------------------------------------- consensus_5389#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||