These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [CCGCGGACGCGTGGGGTCTGATCGGAGTGAACTTCTTCTGGACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGGTTCCCACCCTGCTGTGGGCAACCAAGTTTTACCATCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGGCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTGGACTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGGGAACCGTCGGTTCAGCGTCATTACGTTACGCACACGCTCCAAGTGGCACATCGTGATGGGGCAGTCGTGTCCGAAGGTGCTGGTTTCCTGTTCCGTGAAATGGACCGCAATGGCGGTGCGCGTAAATACGTGGAGTGGCCAAACCGGGCCGAA] [+] EMBL BM621955 [CCGCGGACGCGTGGGGTCTGATCGGAGTGAACTTCTTCTGGACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGGTTCCCACCCTGCTGTGGGCAACCAAGTTTTACCATCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGGCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTGGACTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGGGAACCGTCGGTTCAGCGTCATTACGTTACGCACACGCTCCAAGTGGCACATCGTGATGGGGCAGTCGTGTCCGAAGGTGCTGGTTTCCTGTTCCGTGAAATGGACCGCAATGGCGGTGCGCGTAAATACGTGGAGTGGCCAAACCGGGCCGAA] consensusID : consensus_539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [GTCATCTTGATGCATTGCTTTGCGCATCGTTTATGCAGCCATTGGTTCAGCGATAACAAGTCCCCGCTCAACCTTACGCAAACGGTTCGTGCCCGTCTGATCGGAGTGAACCTCTTCTGGACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGATTCCCACCCTGCTGTGGGCAACCAAGTTTTACCACCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGCCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTGGGCTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGG] [+] EMBL BX621570 [GTCATCTTGATGCATTGCTTTGCGCATCGTTTATGCAGCCATTGGTTCAGCGATAACAAGTCCCCGCTCAACCTTACGCAAACGGTTCGTGCCCGTCTGATCGGAGTGAACCTCTTCTGGACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTAATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAGCCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGATTCCCACCCTGCTGTGGGCAACCAAGTTTTACCACCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGTACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGCCTTCTGTGTGTGAGCTATCTAGTGCCGCTGGTTGGGCTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACCGTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGGGACGAAAGCAATGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_539#0 ------------------------------------------------------------ consensus_539#1 GTCATCTTGATGCATTGCTTTGCGCATCGTTTATGCAGCCATTGGTTCAGCGATAACAAG 60 consensus_539#0 ---------------CCGCGGACG---CGTGGG-GTCTGATCGGAGTGAACTTCTTCTGG 41 consensus_539#1 TCCCCGCTCAACCTTACGCAAACGGTTCGTGCCCGTCTGATCGGAGTGAACCTCTTCTGG 120 *** *** **** ***************** ******** consensus_539#0 ACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTA 101 consensus_539#1 ACGCTACTGATCATCCCGCTAACCCTTGCGAACATTCGGAGCGCATACATCATCGCAGTA 180 ************************************************************ consensus_539#0 ATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAG 161 consensus_539#1 ATTGTGCTGCTTTCGCTGCTCTCCACCATCCTGACGTCCGTGCTTGGATACCAAGGTCAG 240 ************************************************************ consensus_539#0 CCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGGTTCCCACCCTGCTGTGGGCAACC 221 consensus_539#1 CCACGCCGCTGGCTAGCCCTTCATCTAGCATTCCAGATTCCCACCCTGCTGTGGGCAACC 300 ************************************ *********************** consensus_539#0 AAGTTTTACCATCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGT 281 consensus_539#1 AAGTTTTACCACCTTCTGGTAAAGCTGTTCGTACCCATCACAGGACGTATGGGTGCCGGT 360 *********** ************************************************ consensus_539#0 ACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGGCTTCTGTGTGTGAGC 341 consensus_539#1 ACTAACCCCGAATATCTGATTGCCCTGTTGGTGGCTTGCTTTGGCCTTCTGTGTGTGAGC 420 ******************************************** *************** consensus_539#0 TATCTAGTGCCGCTGGTTGGACTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACC 401 consensus_539#1 TATCTAGTGCCGCTGGTTGGGCTGCTTAAAGGCACTTCCGAGCTAACCGCACGAATGACC 480 ******************** *************************************** consensus_539#0 GTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGG 461 consensus_539#1 GTATTCGCAATGATTGCGTTCCTGCTGGGATGCTGCACGCAGGTTGGCTTTCCGTACCGG 540 ************************************************************ consensus_539#0 GACGAAAGCAATGGGGGAACCGTCGGTTCAGCGTCATTACGTTACGCACACGCTCCAAGT 521 consensus_539#1 GACGAAAGCAATGGGG-------------------------------------------- 556 **************** consensus_539#0 GGCACATCGTGATGGGGCAGTCGTGTCCGAAGGTGCTGGTTTCCTGTTCCGTGAAATGGA 581 consensus_539#1 ------------------------------------------------------------ consensus_539#0 CCGCAATGGCGGTGCGCGTAAATACGTGGAGTGGCCAAACCGGGCCGAA 630 consensus_539#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||