These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1511 fasta sequence [TCATTTGTGACACATGTCTTAGCGTAACATATTCACGGTCTCCTAGTTGCGCCTCGCTGTATCTCCTCTAACCATTTCACGGTAGATATAAATCAATGCTTTTGCTGCGATACAATTATTATAAAATGTAACGTTAACTGCTGTGCTATAATCCGCAGCGACGGAAGATCATTACGACTGTTTTTTTTTGCACGTTTACGGGACACATTGGAGCTTCCCATTGCTCAGCCCTTCGGCCCGTCTGAAAGCTTACACACTATTGCTACGATCGGTGTGAAATATTATGCTGTGTAGAAAAAAAAAACATTTTCAATTACATACCGCCATGGGTTAGTATTTCATTAGAGGGTCCTCTCTCCTTTCGCACGTTTCGCAGCGTGCAGCCAGCGTTGTTTAGCGAGAGAGCCCACATTGTGACACCGTAACGCTGCAGCTTCATTGAACGTTAATAATATGCACGTAAATATGGATTCACGCAATGTCCTGCTAGCGTACTGTGATTTATGATGTTGGATAAGACACCCCACCGCTCTGGTAGCCGCTTACGTGTGGCTACATTGTTATTTTTCCATATTTTTTTTACTATTGATACCATTGGAGTTTGATGTTTCTGCTTCAGTTTTCGTCCGCTACAAACGTTCTTAACAAAAATATTCCTACTATTTGAAGCGTCTTACGGTTAAGTCTTCCACGCGCTACACTACCTTGGGGGTGCATTTTGATCCTTTCGGTTTTGTCTTTTTGTTTGTTGGTTGTTGTTGTTGCAGTTGTTGTTGAAGAGTGATTTATGATCATAAGTCGTATGACTTAGTTTACGTAGAACACAATTGTGTCGAGATGACAATTGTGTTTTGGTCACAGTTTCTGCTTCTTCTTCGCCTGGTCACAATTATCATCCAGCTGCAGGACACTGGGATGAGTTGATCAGGGTGTTTGCAGTCGAAGCATCGTTAGTTTGTGCTGCAGTTCCTACTCAAACTCATTGTCGTGCCAGTCCACTCTGGCCCATTCTGGCAGCTCAGTTTCATACTCCCAGCCAGGGCCTCTTGTACTTCCAGGCGTGCAGATACATGACCAGATCTGCGGTTTCGGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTGCTTGTCGGTTGTCATTTTATCTGGATTAAAGGCTAAGTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTAACATTAACACCGGCAACATCGGCGGCTACAGCAGTACCAGTGGTAGTGGTAGCAGACACAGCAACAGCAGCAGTAGCAGTAACAGCAGCAGCAACGGCACTGGTCGTAGTGGCTGCAGTAGCACTGGTTGGTGCTGCCACCAATTTGTTGCACTCTTCGAATGCTCCTGCCGCTCCTGCCGGATCTTCATCAACCTGTGCGGTGGGTGCGACTGCCGAGGTAGGAGACGGAGTGGCAGTGGCACGCTTGGTGCATTCCCAAGATGGTTTAGGCTTTTGACTGATATGCTCCGCATAAACTATCGCTCTGCACC] [+] EMBL CNS08IDS [TCATTTGTGACACATGTCTTAGCGTAACATATTCACGGTCTCCTAGTTGCGCCTCGCTGTATCTCCTCTAACCATTTCACGGTAGATATAAATCAATGCTTTTGCTGCGATACAATTATTATAAAATGTAACGTTAACTGCTGTGCTATAATCCGCAGCGACGGAAGATCATTACGACTGTTTTTTTTTGCACGTTTACGGGACACATTGGAGCTTCCCATTGCTCAGCCCTTCGGCCCGTCTGAAAGCTTACACACTATTGCTACGATCGGTGTGAAATATTATGCTGTGTAGAAAAAAAAAACATTTTCAATTACATACCGCCATGGGTTAGTATTTCATTAGAGGGTCCTCTCTCCTTTCGCACGTTTCGCAGCGTGCAGCCAGCGTTGTTTAGCGAGAGAGCCCACATTGTGACACCGTAACGCTGCAGCTTCATTGAACGTTAATAATATGCACGTAAATATGGATTCACGCAATGTCCTGCTAGCGTACTGTGATTTATGATGTTGGATAAGACACCCCACCGCTCTGGTAGCCGCTTACGTGTGGCTACATTGTTATTTTTCCATATTTTTTTTACTATTGATACCATTGGAGTTTGATGTTTCTGCTTCAGTTTTCGTCCGCTACAAACGTTCTTAACAAAAATATTCCTACTATTTGAAGCGTCTTACGGTTAAGTCTTCCACGCGCTACACTACCTTGGGGGTGCATTTTGATCCTTTCGGTTTTGTCTTTTTGTTTGTTGGTTGTTGTTGTTGCAGTTGTTGTTGAAGAGTGATTTATGATCATAAGTCGTATGACTTAGTTTACGTAGAACACAATTGTGTCGAGATGACAATTGTGTTTTGGTCACAGTTTCTGCTTCTTCTTCGCCTGGTCACAATTATCATCCAGCTGCAGGACACTGGGATGAGTTGATCAGGGTGTTTGCAGTCGAAGCATCGTTAGTTTGTGCTGCAGTTCCTACTCAAACTCATTGTCGTGCCAGTCCACTCTGGC ] [-] EMBL CNS08IDR [ GCTCTGGTAGCCGCTTACGTGTGGCTACATTGTTATTTTTCCATATTTTTTTTACTATTGATACCATTGGAGTTTGATGTTTCTGCTTCAGTTTTCGTCCGCTACAAACGTTCTTAACAAAAATATTCCTACTATTTGAAGCGTCTTACGGTTAAGTCTTCCACGCGCTACACTACCTTGGGGGTGCATTTTGATCCTTTCGGTTTTGTCTTTTTGTTTGTTGGTTGTTGTTGTTGCAGTTGTTGTTGAAGAGTGATTTATGATCATAAGTCGTATGACCTAGTTTACGTAGAACACAATTGTGTCGAGATGACAATTGTGTTTTGGTCACAGTTTCTGCTTCTTCTTCGCCTGGTCACAATTATCATCCAGCTGCAGGACACTGGGATGAGTTGATCAGGGTGTTTGCAGTCGAAGCATCGTTAGTTTGTGCTGCAGTTCCTACTCAAACTCATTGTCGTGCCAGTCCACTCTGGCCCATTCTGGCAGCTCAGTTTCATACTCCCAGCCAGGGCCTCTTGTACTTCCAGGCGTGCAGATACATGACCAGATCTGCGGTTTCGGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTGCTTGTCGGTTGTCATTTTATCTGGATTAAAGGCTAAGTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTAACATTAACACCGGCAACATCGGCGGCTACAGCAGTACCAGTGGTAGTGGTAGCAGACACAGCAACAGCAGCAGTAGCAGTAACAGCAGCAGCAACGGCACTGGTCGTAGTGGCTGCAGTAGCACTGGTTGGTGCTGCCACCAATTTGTTGCACTCTTCGAATGCTCCTGCCGCTCCTGCCGGATCTTCATCAACCTGTGCGGTGGGTGCGACTGCCGAGGTAGGAGACGGAGTGGCAGTGGCACGCTTGGTGCATTCCCAAGATGGTTTAGGCTTTTGACTGATATGCTCCGCATAAACTATCGCTCTGCACC] consensusID : consensus_5397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence [CCCGAGTTTACCTGCTCGGAAAGCCACGGCCGTGTCGCTGGGCAGCGAAAGCCCCCATGAGAATATGTGCGCCTCGATGCTGGTCCCGAATGCGCTGAACGCAGTCAGCAGTACTGGAATCAGCACGACCGTTAGCACTGGCAGCGGCAACATGGTGCCTGCCAGCGCCGGTCTACCACCTAACACCATCCTCTGCAAGCCTGGAATTGCCAGTCCCAGGAAAGGGTTAACCCGGTGGGGCCCTAACGCCCCCCGAAGAAGTAAACCCCAATGGCTGGGGAACCTAAAAGGGGGAAACAATAGTTTCCTGGGCCGCCCCTGGTAAAGCCTTTTTTGCGAGGCCGCCTTCTTACTTATAATTCCCCTAAGAGGAATTACTACTAAGACTTTGAANCGATAAGCCCTGAACAAGGCACTGCTACGAATGCAAAGTGCGCTACCGAGATCCGAAACCGCAGGATCTGGTCATGTATCTGCACGCCTGGAAGTACAAG] [+] EMBL AL932801 [CCCGAGTTTACCTGCTCGGAAAGCCACGGCCGTGTCGCTGGGCAGCGAAAGCCCCCATGAGAATATGTGCGCCTCGATGCTGGTCCCGAATGCGCTGAACGCAGTCAGCAGTACTGGAATCAGCACGACCGTTAGCACTGGCAGCGGCAACATGGTGCCTGCCAGCGCCGGTCTACCACCTAACACCATCCTCTGCAAGCCTGGAATTGCCAGTCCCAGGAAAGGGTTAACCCGGTGGGGCCCTAACGCCCCCCGAAGAAGTAAACCCCAATGGCTGGGGAACCTAAAAGGGGGAAACAATAGTTTCCTGGGCCGCCCCTGGTAAAGCCTTTTTTGCGAGGCCGCCTTCTTACTTATAATTCCCCTAAGAGGAATTACTACTAAGACTTTGAANCGATAAGCCCTGAACAAGGCACTGCTACGAATGCAAAGTGCGCTACCGAGATCCGAAACCGCAGGATCTGGTCATGTATCTGCACGCCTGGAAGTACAAG] consensusID : consensus_5397#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [GGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTGCTTGTCGGTTGTCATTTTATCTGGATTAAAGGCTAAGTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTAACACTGATATGCCCCCAAAACTATCGCTCAGCACCTATGGAGCACCTGCTGGCACAGGCAACGCACAAGACGTTAATTTACGTCTAATTAACATCAATGATTTCACTTTTCCGCGACGTTTCTATTTGCACAAGCTGAATAAACATCATTATAATTCGTGCGTTTGACGCCTGTAGCAAAGATAAGAAATACACGCCCGTGTATGCGTACTTACGCCAGTACGCGCGG] [-] EMBL BM585515 [GGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTGCTTGTCGGTTGTCATTTTATCTGGATTAAAGGCTAAGTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTAACACTGATATGCCCCCAAAACTATCGCTCAGCACCTATGGAGCACCTGCTGGCACAGGCAACGCACAAGACGTTAATTTACGTCTAATTAACATCAATGATTTCACTTTTCCGCGACGTTTCTATTTGCACAAGCTGAATAAACATCATTATAATTCGTGCGTTTGACGCCTGTAGCAAAGATAAGAAATACACGCCCGTGTATGCGTACTTACGCCAGTACGCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5397#0 TCATTTGTGACACATGTCTTAGCGTAACATATTCACGGTCTCCTAGTTGCGCCTCGCTGT 60 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 ATCTCCTCTAACCATTTCACGGTAGATATAAATCAATGCTTTTGCTGCGATACAATTATT 120 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 ATAAAATGTAACGTTAACTGCTGTGCTATAATCCGCAGCGACGGAAGATCATTACGACTG 180 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 TTTTTTTTTGCACGTTTACGGGACACATTGGAGCTTCCCATTGCTCAGCCCTTCGGCCCG 240 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 TCTGAAAGCTTACACACTATTGCTACGATCGGTGTGAAATATTATGCTGTGTAGAAAAAA 300 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 AAAACATTTTCAATTACATACCGCCATGGGTTAGTATTTCATTAGAGGGTCCTCTCTCCT 360 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 TTCGCACGTTTCGCAGCGTGCAGCCAGCGTTGTTTAGCGAGAGAGCCCACATTGTGACAC 420 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 CGTAACGCTGCAGCTTCATTGAACGTTAATAATATGCACGTAAATATGGATTCACGCAAT 480 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 GTCCTGCTAGCGTACTGTGATTTATGATGTTGGATAAGACACCCCACCGCTCTGGTAGCC 540 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 GCTTACGTGTGGCTACATTGTTATTTTTCCATATTTTTTTTACTATTGATACCATTGGAG 600 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 TTTGATGTTTCTGCTTCAGTTTTCGTCCGCTACAAACGTTCTTAACAAAAATATTCCTAC 660 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 TATTTGAAGCGTCTTACGGTTAAGTCTTCCACGCGCTACACTACCTTGGGGGTGCATTTT 720 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 GATCCTTTCGGTTTTGTCTTTTTGTTTGTTGGTTGTTGTTGTTGCAGTTGTTGTTGAAGA 780 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 GTGATTTATGATCATAAGTCGTATGACTTAGTTTACGTAGAACACAATTGTGTCGAGATG 840 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 ACAATTGTGTTTTGGTCACAGTTTCTGCTTCTTCTTCGCCTGGTCACAATTATCATCCAG 900 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 CTGCAGGACACTGGGATGAGTTGATCAGGGTGTTTGCAGTCGAAGCATCGTTAGTTTGTG 960 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------------------------------------------------------ consensus_5397#0 CTGCAGTTCCTACTCAAACTCATTGTCGTGCCAGTCCACTCTGGCCCATTCTGGCAGCTC 1020 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 ------------CCCGAGTTTACCTGCTCGGAAAGCCACGGCCGTGTCGCTGGGCAGCGA 48 consensus_5397#0 AGTTTCATACTCCCAGCCAGGGCCTCTTGTACTTCCAGGCGTGCAGATACATGACCAGAT 1080 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 AAGCCCCCATGAGAATATGTGCGCCTCGATGCT---GGTCCCGAATGCGCTGAACGCAGT 105 consensus_5397#0 CTGCGGTTTCGGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTG-CTTGTCGGTTGTCA 1139 consensus_5397#2 ----------GGATCTCGGTAGCGCACTTTGCATTCGTAGCAGTG-CTTGTCGGTTGTCA 49 consensus_5397#1 CAGCAGTACTGGAA-TCAGCACGACCGTTAGCACTGGCAGCGGCAACATGGTGCCTGCCA 164 *** ** * * * ** *** * * *** * * ** * ** ** consensus_5397#0 TTTTATCTGGATTAAAGGCTAA-GTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTA 1198 consensus_5397#2 TTTTATCTGGATTAAAGGCTAA-GTCGGGCGATTCGTGTCCTGTTTGGGTGGCCACGGTA 108 consensus_5397#1 GCG---CCGGTCTACCACCTAACACCATCCTCTGCAAGCCTGGAATTGCCAGTCCCAGGA 221 * ** ** **** * * * * * * * * * * * * * * consensus_5397#0 ACATTAACA--CCGGCAACA-------TCGGCGGCTACAGCAGTA---CCAG-TGGTAGT 1245 consensus_5397#2 ACACTGATATGCCCCCAAAACTATCGCTCAGCACCTATGG-AGCA---CCTGCTGGCACA 164 consensus_5397#1 A-AGGGTTAACCCGGTGGGGCCCTA--ACGCCCCCCGAAGAAGTAAACCCCAATGGCTGG 278 * * * ** * * * * ** * ** *** consensus_5397#0 GGTAGCAGACACAGCAACAGCAGCAGTAGCAGTAACAGCAGCAGCAACGGCACTGGT-CG 1304 consensus_5397#2 GGCAACGCACAAGACGTTAATTTACGTCTAATTAACATCAATGATTTCACTTTT--C-CG 221 consensus_5397#1 GGAACCTAAAAGGGGGAAACAATAGTTTCCTGGGCCGCCCCTGGTAAAGCCTTTTTTGCG 338 ** * * * * * * * * * ** consensus_5397#0 TAGTGGCTGCAGTAGCACTGGTTGGTGCTGCCACCAATTTGTTGCACTCTTCGAATGCTC 1364 consensus_5397#2 CGACGTTTCTATTTGCACAAGCTGA-ATAAACATCATTATAATTCGTGCGTTTGACGCCT 280 consensus_5397#1 AGGCCGCCTTCTTACTTATAATTCCCCTAAGAGGAATTACTACTAAGACTTTGAANCGAT 398 * * * * * * * consensus_5397#0 CTGCCGCTCCTGCCGGATCTTCATCAACCT---GTGCGGTGGGTGCGACTGCCGAGGTAG 1421 consensus_5397#2 GTAGCAAAGATAAGAAATACACGCCCGTGT---ATGCG-TACTTACGCCAGTACGCGCGG 336 consensus_5397#1 AAGCCCTGAACAAGGCACTGCTACGAATGCAAAGTGCGCTACCGAGATCCGAAACCGCAG 458 * * **** * * * * * consensus_5397#0 GAGACGGAGTGGCAGTGGCACGCTTGGTGCATTCCCAAGATGGTTTAGGCTTTTGACTGA 1481 consensus_5397#2 ------------------------------------------------------------ consensus_5397#1 GATCTGGTCATGTATCTGCACGCCTGGAAGTACAAG------------------------ 494 consensus_5397#0 TATGCTCCGCATAAACTATCGCTCTGCACC 1511 consensus_5397#2 ------------------------------ consensus_5397#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||