cluster # 5398

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Anopheles gambiae
cluster # 5398 cluster # 5398 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5398#0 length = 837 sequences # 3

consensus_5398#1 length = 590 sequences # 1

consensusID : consensus_5398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 837
fasta sequence

                              [CCTACTGGAAAAACAACTAGACCGTCCGCACGTGCGTCCACGATGGCTGATCCTTCCTCGTTCCTGGCAAAGCTGGTCGCTCCACGCTACCGGCATGAAATACTGGAGATTGCCAACAGCAGTGTGGACCTTGGGGACAAGCACGTCATCCTGAAGAAGAACAAAGCGAACGCGGGGAAGCTTACGAAAAAGAAACTTTCGCGCAAAGAAATCAAAGAGCTTGGCCTGTACACCTTACCGCACGATACGATTACGTACCGAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTATTACGATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACCGAGGCGAGAT-AC-AACACGATTGT-AGCAAGCTT-ACTGAAGGCAGATTATCATGGAGCTAAAATTCACATCGTTCGATCGAAACAGCCCAGCGTGGTCGGCATGAAGGGCATCGTGGTACTGGACACGAAAGGAACCTTCAAGATGATTTCGAAGGACAACAAACTGCGAACAATCCCGAAAAATGATTCCCAATTCGAAGTGTTCCTACAAGATAAGGTGATAACGATTTTCGGTAAACATCTCAACGCGCGGCCCGCCGAACGGTCGGTGAAAAAGATGAAAACATTCGCCTTTCCCGATCTGTAGAGGGAAGTGAAGCGAAGCCAATGTGTGATACAAATTAACGTTCAATCGAATGTGTGCCCTAATATGCATAATCAGCTGGTACAATGAATATAGAAATGAAAAGATTGTTAAATAAAACCATGATTATGGAGAAGCTTCGAAATGCTGCCAAGTACGACAAGTACGGAAAAAAAAAAAAAAAAAAAAAAAAAG]

[+] EMBL CNS09S3U             [CCTACTGGAAAAACAACTAGACCGTCCGCACGTGCGTCCACGATGGCTGATCCTTCCTCGTTCCTGGCAAAGCTGGTCGCTCCACGCTACCGGCATGAAATACTGGAGATTGCCAACAGCAGTGTGGACCTTGGGGACAAGCACGTCATCCTGAAGAAGAACAAAGCGAACGCGGGGAAGCTTACGAAAAAGAAACTTTCGCGCAAAGAAATCAAAGAGCTTGGCCTGTACACCTTACCGCACGATACGATTACGTACCGAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTATTACGATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACCGAGGCGAGAT AC AACACGATTGT AGCAAGCTT ACTGAAGGCAGATTATCATGGAGCTAAAATTCACATCGTTCGATCGAAACAGCCCAGCGTGGTCGGCATGAAGGGCATCGTGGTACTGGACACGAAAGGAACCTTCAAGATGATTTCGAAGGACAACAAACTGCGAACAATCCCGAAAAATGATTCCCAATTCGAAGTGTTCCTACAAGATAAGGTGATAACGATTTTCGGTAAACATCTCAACGCGCGGCCCGCCGAACGGTCGGTGAAAAAGATGAAAACATTCGCCTTTCCCGATCTGTAGAGGGAAGTGAAGCGAAGCCAATGTGTGATACAAATTAACGTTCAATCGAATGTGTGCCCTAATATGCATAATCA                                                                                                                      ]
[+] EMBL CNS08NSP             [                                                                                                                                CCTTGGGGACAAGCACGTCATCCTGAAGAAGAACAAAGCGAACGCGCGGAAGCTTACGAAAAAGAAACTTTCGCGCAAAGAAATCAAAGAGCTTGGCCTGTACACCTTACCGCACGATACGATTACGTACCGAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTATTACGATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACCGAGGCGAGATAACAAACACGATTGTAAGCAAGCTTAACTGAAagg                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CNS09S3V             [                                                                                                                                                                                                           CAAAGAAATCAAAGAGCTTGGCCTGTACACCTTACCGCACGATACGATTACGTACCGAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTATTACGATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACCGAGGCGAGAT AC AACACGATTGT AGCAAGCTT ACTGAAGGCAGATTATCATGGAGCTAAAATTCACATCGTTCGATCGAAACAGCCCAGCGTGGTCGGCATGAAGGGCATCGTGGTACTGGACACGAAAGGAACCTTCAAGATGATTTCGAAGGACAACAAACTGCGAACAATCCCGAAAAATGATTCCCAATTCGAAGTGTTCCTACAAGATAAGGTGATAACGATTTTCGGTAAACATCTCAACGCGCGGCCCGCCGAACGGTCGGTGAAAAAGATGAAAACATTCGCCTTTCCCGATCTGTAGAGGGAAGTGAAGCGAAGCCAATGTGTGATACAAATTAACGTTCAATCGAATGTGTGCCCTAATATGCATAATCAGCTGGTACAATGAATATAGAAATGAAAAGATTGTTAAATAAAACCATGATTATGGAGAAGCTTCGAAATGCTGCCAAGTACGACAAGTACGGAAAAAAAAAAAAAAAAAAAAAAAAAG]




>consensus_5398#0
CCTACTGGAAAAACAACTAGACCGTCCGCACGTGCGTCCACGATGGCTGATCCTTCCTCG
TTCCTGGCAAAGCTGGTCGCTCCACGCTACCGGCATGAAATACTGGAGATTGCCAACAGC
AGTGTGGACCTTGGGGACAAGCACGTCATCCTGAAGAAGAACAAAGCGAACGCGGGGAAG
CTTACGAAAAAGAAACTTTCGCGCAAAGAAATCAAAGAGCTTGGCCTGTACACCTTACCG
CACGATACGATTACGTACCGAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTATTAC
GATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACCGAGGCGAGATACAACACGATT
GTAGCAAGCTTACTGAAGGCAGATTATCATGGAGCTAAAATTCACATCGTTCGATCGAAA
CAGCCCAGCGTGGTCGGCATGAAGGGCATCGTGGTACTGGACACGAAAGGAACCTTCAAG
ATGATTTCGAAGGACAACAAACTGCGAACAATCCCGAAAAATGATTCCCAATTCGAAGTG
TTCCTACAAGATAAGGTGATAACGATTTTCGGTAAACATCTCAACGCGCGGCCCGCCGAA
CGGTCGGTGAAAAAGATGAAAACATTCGCCTTTCCCGATCTGTAGAGGGAAGTGAAGCGA
AGCCAATGTGTGATACAAATTAACGTTCAATCGAATGTGTGCCCTAATATGCATAATCAG
CTGGTACAATGAATATAGAAATGAAAAGATTGTTAAATAAAACCATGATTATGGAGAAGC
TTCGAAATGCTGCCAAGTACGACAAGTACGGAAAAAAAAAAAAAAAAAAAAAAAAAG

consensusID : consensus_5398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 590
fasta sequence

                              [AGAATCGCCCGAGGNNAAAACGAACGCGGGAAGCTTACGCAAAAGAAACTTTCGCGCAGGGGAAATCAACAGAGCTTGGCCTGTACACCTTACCGCACGATACGATTACGTACCCGAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTATTACGATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACCCGAGGCGAGATACAGCACGATTGTAGCTAGCTTACTGAAGGCGGACTATCACGGAGCAAAAATTCACATCGTCCGATCGAAACAGCCCAGCGTGGTCGCGCATGAAGGGCATCGTGGTACTGGACACGAAAGGAACCTTCAAGATGATTTCGAAAGACAACAAACTGCGAACAATCCCGAAAAATGATTCCCAGTTCGAAGTGTTCCTACAAGATAAGGTGATAACGATTTTCGGTAAACATCTCAACGCGCGGCCCGCCGAACGGTCGGTGAAAAAGATGAAAACGTTCGCCTTTCCCGATCTGTAGAGGGAAGTGGAGTTAGGTTTAGAAAGCGGAAGCCATTGTGTGATACAAATTAACGTTCAATTGAACTGTGTGCACTAATATGCATCA]

[+] EMBL AL932819             [AGAATCGCCCGAGGNNAAAACGAACGCGGGAAGCTTACGCAAAAGAAACTTTCGCGCAGGGGAAATCAACAGAGCTTGGCCTGTACACCTTACCGCACGATACGATTACGTACCCGAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTATTACGATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACCCGAGGCGAGATACAGCACGATTGTAGCTAGCTTACTGAAGGCGGACTATCACGGAGCAAAAATTCACATCGTCCGATCGAAACAGCCCAGCGTGGTCGCGCATGAAGGGCATCGTGGTACTGGACACGAAAGGAACCTTCAAGATGATTTCGAAAGACAACAAACTGCGAACAATCCCGAAAAATGATTCCCAGTTCGAAGTGTTCCTACAAGATAAGGTGATAACGATTTTCGGTAAACATCTCAACGCGCGGCCCGCCGAACGGTCGGTGAAAAAGATGAAAACGTTCGCCTTTCCCGATCTGTAGAGGGAAGTGGAGTTAGGTTTAGAAAGCGGAAGCCATTGTGTGATACAAATTAACGTTCAATTGAACTGTGTGCACTAATATGCATCA]




>consensus_5398#1
AGAATCGCCCGAGGNNAAAACGAACGCGGGAAGCTTACGCAAAAGAAACTTTCGCGCAGG
GGAAATCAACAGAGCTTGGCCTGTACACCTTACCGCACGATACGATTACGTACCCGAGAT
GGGTTGAAGCTACACCGGATGTGGCTCGGCTATTACGATACCTTCTTCCCGCCGGGAGAA
TGTCCGGATGTGACCCGAGGCGAGATACAGCACGATTGTAGCTAGCTTACTGAAGGCGGA
CTATCACGGAGCAAAAATTCACATCGTCCGATCGAAACAGCCCAGCGTGGTCGCGCATGA
AGGGCATCGTGGTACTGGACACGAAAGGAACCTTCAAGATGATTTCGAAAGACAACAAAC
TGCGAACAATCCCGAAAAATGATTCCCAGTTCGAAGTGTTCCTACAAGATAAGGTGATAA
CGATTTTCGGTAAACATCTCAACGCGCGGCCCGCCGAACGGTCGGTGAAAAAGATGAAAA
CGTTCGCCTTTCCCGATCTGTAGAGGGAAGTGGAGTTAGGTTTAGAAAGCGGAAGCCATT
GTGTGATACAAATTAACGTTCAATTGAACTGTGTGCACTAATATGCATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5398#0      CCTACTGGAAAAACAACTAGACCGTCCGCACGTGCGTCCACGATGGCTGATCCTTCCTCG 60
consensus_5398#1      ------------------------------------------------------------
                                                                                  

consensus_5398#0      TTCCTGGCAAAGCTGGTCGCTCCACGCTACCGGCATGAAATACTGGAGATTGCCAACAGC 120
consensus_5398#1      ------------------------------------------------------------
                                                                                  

consensus_5398#0      AGTGTGGACCTTGGGGACAAGCACGTCATCCTGAAGAAGAACAAAGCGAACGCGGGGAAG 180
consensus_5398#1      ---------------------AGAATCGCCC-----GAGGNNAAAACGAACGCGGG-AAG 33
                                               **  **      **   *** ********** ***

consensus_5398#0      CTTACGAAAAAGAAACTTTCGCGCAAAG-AAATCAA-AGAGCTTGGCCTGTACACCTTAC 238
consensus_5398#1      CTTACGCAAAAGAAACTTTCGCGCAGGGGAAATCAACAGAGCTTGGCCTGTACACCTTAC 93
                      ****** ******************  * ******* ***********************

consensus_5398#0      CGCACGATACGATTACGTACC-GAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTAT 297
consensus_5398#1      CGCACGATACGATTACGTACCCGAGATGGGTTGAAGCTACACCGGATGTGGCTCGGCTAT 153
                      ********************* **************************************

consensus_5398#0      TACGATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACC-GAGGCGAGATACAACAC 356
consensus_5398#1      TACGATACCTTCTTCCCGCCGGGAGAATGTCCGGATGTGACCCGAGGCGAGATACAGCAC 213
                      ****************************************** ************* ***

consensus_5398#0      GATTGTAGCAAGCTTACTGAAGGCAGATTATCATGGAGCTAAAATTCACATCGTTCGATC 416
consensus_5398#1      GATTGTAGCTAGCTTACTGAAGGCGGACTATCACGGAGCAAAAATTCACATCGTCCGATC 273
                      ********* ************** ** ***** ***** ************** *****

consensus_5398#0      GAAACAGCCCAGCGTGGTCG-GCATGAAGGGCATCGTGGTACTGGACACGAAAGGAACCT 475
consensus_5398#1      GAAACAGCCCAGCGTGGTCGCGCATGAAGGGCATCGTGGTACTGGACACGAAAGGAACCT 333
                      ******************** ***************************************

consensus_5398#0      TCAAGATGATTTCGAAGGACAACAAACTGCGAACAATCCCGAAAAATGATTCCCAATTCG 535
consensus_5398#1      TCAAGATGATTTCGAAAGACAACAAACTGCGAACAATCCCGAAAAATGATTCCCAGTTCG 393
                      **************** ************************************** ****

consensus_5398#0      AAGTGTTCCTACAAGATAAGGTGATAACGATTTTCGGTAAACATCTCAACGCGCGGCCCG 595
consensus_5398#1      AAGTGTTCCTACAAGATAAGGTGATAACGATTTTCGGTAAACATCTCAACGCGCGGCCCG 453
                      ************************************************************

consensus_5398#0      CCGAACGGTCGGTGAAAAAGATGAAAACATTCGCCTTTCCCGATCTGTAGAGGGAAGTGA 655
consensus_5398#1      CCGAACGGTCGGTGAAAAAGATGAAAACGTTCGCCTTTCCCGATCTGTAGAGGGAAGTGG 513
                      **************************** ****************************** 

consensus_5398#0      AGC---------------GAAGCCAATGTGTGATACAAATTAACGTTCAATCGAA-TGTG 699
consensus_5398#1      AGTTAGGTTTAGAAAGCGGAAGCCATTGTGTGATACAAATTAACGTTCAATTGAACTGTG 573
                      **                ******* ************************* *** ****

consensus_5398#0      TGCCCTAATATGCATAATCAGCTGGTACAATGAATATAGAAATGAAAAGATTGTTAAATA 759
consensus_5398#1      TGCACTAATATGCATCA------------------------------------------- 590
                      *** *********** *                                           

consensus_5398#0      AAACCATGATTATGGAGAAGCTTCGAAATGCTGCCAAGTACGACAAGTACGGAAAAAAAA 819
consensus_5398#1      ------------------------------------------------------------
                                                                                  

consensus_5398#0      AAAAAAAAAAAAAAAAAG 837
consensus_5398#1      ------------------