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Anopheles gambiae
cluster # 5402 cluster # 5402       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5402#0 length = 1351 sequences # 3  
consensus_5402#1 length = 695 sequences # 1  

consensusID : consensus_5402#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1351
fasta sequence
                              [TTAGTTCTCTTCCCATTATGAAT--CCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGAC-AAAAAAAACTCATTGTAATGCGGTAGGCCACGGCACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGTCCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACGCGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTTTGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCTCAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCTCCGTACCGCTCGCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGCCGCTTTGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATATCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTTTCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGGTTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCGACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG]

[+] EMBL CNS09HI1             [TTAGTTCTCTTCCCATTATGAAT  CCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGAC AAAAAAAACTCATTGTAATGCGGTAGGCCACGGCACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGTCCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACGCGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTTTGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCTCAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AL932876             [                  TGAATTCCCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGACAAAAAAAAACTCATTATAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CNS09HI0             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCTCCGTACCGCTCGCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGCCGCTTTGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATATCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTTTCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGGTTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCGACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG]


>consensus_5402#0 TTAGTTCTCTTCCCATTATGAATCCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAG CACATGTGTGATTTTGCAAAACAGACAAAAAAAACTCATTGTAATGCGGTAGGCCACGGC ACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGT CCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACG CGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTT TGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCT CAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCG CCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTT GGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTA GCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCT CGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCC GCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGA GTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCG TTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCA CCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCAC TATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCT CCGTACCGCTCGCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCGT GTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGCC GCTTTGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATATC ACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTTTC CGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGGTT GGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCGAC AGCCGGAGGATGCGCATGAAGCGGCCGCTTG



consensusID : consensus_5402#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence
                              [GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCTCCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGCCGGACGCGTGGGCGGACGCGTGGGCGG]

[-] EMBL BM575832             [GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCTCCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGCCGGACGCGTGGGCGGACGCGTGGGCGG]


>consensus_5402#1 GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGG AGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCT CCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCCTTCTGCTTCGCTTTTT TCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGA GAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCAC CGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCG TTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTA TGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTTGGAG CGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGAT CCTTAATACTTCCCCGCCGCTCCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCC GCATGCGTTTCCCGCCACCGGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCT TCAAGCGCCGGACGCGTGGGCGGACGCGTGGGCGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5402#0      TTAGTTCTCTTCCCATTATGAATCCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAG 60
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      CACATGTGTGATTTTGCAAAACAGACAAAAAAAACTCATTGTAATGCGGTAGGCCACGGC 120
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      ACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGT 180
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      CCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACG 240
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      CGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTT 300
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      TGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCT 360
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      CAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCG 420
consensus_5402#1      ---------------------------GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCG 33
                                                 *********************************

consensus_5402#0      CCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTT 480
consensus_5402#1      CCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTT 93
                      ************************************************************

consensus_5402#0      GGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTA 540
consensus_5402#1      GGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTA 153
                      ************************************************************

consensus_5402#0      GCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCT 600
consensus_5402#1      GCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCT 213
                      ********** *************************************************

consensus_5402#0      CGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCC 660
consensus_5402#1      CGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCC 273
                      ************************************************************

consensus_5402#0      GCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGA 720
consensus_5402#1      GCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGA 333
                      ************************************************************

consensus_5402#0      GTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCG 780
consensus_5402#1      GTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCG 393
                      ************************************************************

consensus_5402#0      TTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCA 840
consensus_5402#1      TTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCA 453
                      ************************************************************

consensus_5402#0      CCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCAC 900
consensus_5402#1      CCTCGAGATCCGGTATGTGCCT------------TGGAGCGTTTTGTGCACAATCGTCAC 501
                      **********************            **************************

consensus_5402#0      TATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCT 960
consensus_5402#1      TATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCT 561
                      **************************************************** *******

consensus_5402#0      CCGTACCGCTCGC-TCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCG 1019
consensus_5402#1      CCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGG 621
                      ************* ******************************************** *

consensus_5402#0      TGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGC 1079
consensus_5402#1      TGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGC-CGGACGCGTGGG 680
                      ************************************* ********* *  **** * * 

consensus_5402#0      CGCTT-TGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATA 1138
consensus_5402#1      CGGACGCGTGGGCGG--------------------------------------------- 695
                      **     *  * **                                              

consensus_5402#0      TCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTT 1198
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      TCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGG 1258
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      TTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCG 1318
consensus_5402#1      ------------------------------------------------------------
                                                                                  

consensus_5402#0      ACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG 1351
consensus_5402#1      ---------------------------------
                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)