These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5402#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1351 fasta sequence [TTAGTTCTCTTCCCATTATGAAT--CCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGAC-AAAAAAAACTCATTGTAATGCGGTAGGCCACGGCACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGTCCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACGCGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTTTGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCTCAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCTCCGTACCGCTCGCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGCCGCTTTGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATATCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTTTCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGGTTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCGACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG] [+] EMBL CNS09HI1 [TTAGTTCTCTTCCCATTATGAAT CCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGAC AAAAAAAACTCATTGTAATGCGGTAGGCCACGGCACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGTCCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACGCGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTTTGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCTCAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCA ] [+] EMBL AL932876 [ TGAATTCCCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAGCACATGTGTGATTTTGCAAAACAGACAAAAAAAAACTCATTATAATG ] [-] EMBL CNS09HI0 [ TTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCTCCGTACCGCTCGCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGCCGCTTTGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATATCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTTTCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGGTTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCGACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG] consensusID : consensus_5402#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCTCCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGCCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM575832 [GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCGCCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTTGGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTAGCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCTCGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCCGCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGAGTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCGTTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCACCTCGAGATCCGGTATGTGCCTTGGAGCGTTTTGTGCACAATCGTCACTATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCTCCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGGTGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGCCGGACGCGTGGGCGGACGCGTGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5402#0 TTAGTTCTCTTCCCATTATGAATCCATTCACTGTTAAGCCGTCGCCTCGTCGTTCGTTAG 60 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 CACATGTGTGATTTTGCAAAACAGACAAAAAAAACTCATTGTAATGCGGTAGGCCACGGC 120 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 ACGTCCCGGGCGTGCGCCGCTAGAAGAGATCCATATCATCGCACGTAATATCGAGACAGT 180 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 CCTCTTGGTAGCTGGCCAAGTTTCGCAACGCTGTCGAACCGTCCGGCAGCATGCGGCACG 240 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 CGTCCTCTGGAGCGACGTCCGAATCTTTGTCCGTTTCGTGCCCGTGCAGCGCAGCGTTTT 300 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 TGTCCGGGCTGGTGGTGACGTTTACGTGGATGTTGCGCGCTTCGAAGTCGGAGTTGCCCT 360 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 CAAAGTTTTCCTCACCCACCGGGGAAGGGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCG 420 consensus_5402#1 ---------------------------GGGGAGGGTTTGAAAGAGTGCTGTGTGTTTCCG 33 ********************************* consensus_5402#0 CCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTT 480 consensus_5402#1 CCTTCAGGTGTGCCATGATCGGCAGGGAGGAAGAAGTTTGCTCAGCATCGTTGGCCGCTT 93 ************************************************************ consensus_5402#0 GGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTA 540 consensus_5402#1 GGCGGTTAAGCGTTTTCTTCAGCTCCTCCACCTTCTTGTCCCGGTTGATGCTTTTCGTTA 153 ************************************************************ consensus_5402#0 GCTTCCATTCTTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCT 600 consensus_5402#1 GCTTCCATTCCTTCTGCTTCGCTTTTTTCTCGCTCTGAAAGATTGTCCTTTTGGCCTCCT 213 ********** ************************************************* consensus_5402#0 CGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCC 660 consensus_5402#1 CGTCTACCTCTTCGCAATGCTTCAGGAGAAAGAGAAACACACCGCCCGGGGTGCGCCGCC 273 ************************************************************ consensus_5402#0 GCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGA 720 consensus_5402#1 GCCAGCCTTTCATAACGAGCATTCCACCGTCGGCTTCGATTTTCTGTGTCTCTTTGAAGA 333 ************************************************************ consensus_5402#0 GTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCG 780 consensus_5402#1 GTTTCATTGGAATTTCCTGGCCGAGCGTTTCAGCTACTCGCACCATCAGTTCCGTGTGCG 393 ************************************************************ consensus_5402#0 TTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCA 840 consensus_5402#1 TTTCCTCCAGCTTTTCGGCCAGCTCTATGCCAAACTTTTCATTGGTACAGTTTTCCCCCA 453 ************************************************************ consensus_5402#0 CCTCGAGATCCGGTATGTGCCTGCAATCAAATCTTGGAGCGTTTTGTGCACAATCGTCAC 900 consensus_5402#1 CCTCGAGATCCGGTATGTGCCT------------TGGAGCGTTTTGTGCACAATCGTCAC 501 ********************** ************************** consensus_5402#0 TATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCGCGCCGCT 960 consensus_5402#1 TATTGCTATCAGTGCTGTTGTTTCGCTTGCCGATGCGATCCTTAATACTTCCCCGCCGCT 561 **************************************************** ******* consensus_5402#0 CCGTACCGCTCGC-TCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCCG 1019 consensus_5402#1 CCGTACCGCTCGCCTCCGGATACGAGTTGTGACCCGTCCGCATGCGTTTCCCGCCACCGG 621 ************* ******************************************** * consensus_5402#0 TGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGTTTCAAGCGCTCAAACGCATTGC 1079 consensus_5402#1 TGTAACCATCGGAATCGTCCGAATTGGACTGGCGGCGCTTCAAGCGC-CGGACGCGTGGG 680 ************************************* ********* * **** * * consensus_5402#0 CGCTT-TGCAGCCGAAATCTCAGCTTGTAGTCGTACGACTCGACGTCACGGTTTCGCATA 1138 consensus_5402#1 CGGACGCGTGGGCGG--------------------------------------------- 695 ** * * ** consensus_5402#0 TCACTCCCGGTCACACCGCAACCGCGCATCGTTTCCATCAGTGTGTCCTCTTGCAAGCTT 1198 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 TCCGTCCATATGTTATACTTCTTTGTTCGGGCGGCGGTACCGTGTGGCATGGGTTTGGGG 1258 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 TTGGCACCACTAGCAGCAGCGGCGGCGGCGGCGGCGGCAGCAGCAGCAGTGGCAGCAGCG 1318 consensus_5402#1 ------------------------------------------------------------ consensus_5402#0 ACAGCCGGAGGATGCGCATGAAGCGGCCGCTTG 1351 consensus_5402#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||