These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1194 fasta sequence [CCGCAACAACCGGAGTACCAGCAACCAGCTTCAATGTACTACCAGCAACAACCCGTACAATACGCACAACCGCCAGCAGCGTACTCACCGTACAACGAGCAGCAGTACAACCGTCGGCCACGACCGGAAACATCTTCGTCATCCCCAGGCTTCTTGGATACGATTGCCCGAGCGTTCGGTTTAAACGCGGGAACCAACTCTAGAGCTCCGCGGCCTGCTACGACCTCCTCCTCGTCTGGGCTGGGGCTTTTGGGGATGGCACTTGGGCTAGGATAGAGAACCCGCAGTTTCGCCACGTAGGGTAACTGTACCAGTTTTCGGCAGTGTACCTATTTTCGGCAGGGTAGCTAAAAACGTGAAATTCTGCACAAATGCGGTAAAAAAATTCACAAAATACAATTTTGTAGTGAAAGTGTACTTATTTGATATTCACATACGAAGTTTCACACCATTTCATTTCGTATTTTCCAAAATATCAAATAAATTGTGCTTTTTTTCGGCAGCTTTGCTGTCAGCCAATCGTTCGGCAGGTTTTGTGATTAAGAGAATCAGAACAGTAAAACAGTG-AAAAAGTGGTGTATATTAAAGATTTTATGCTTATTTAATTTATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATGTTCATTTTTGACAGCTCAATTTTGTGGGCTCCTGCCGAAACTCGGAACAATAACACACCTTGGATTTGGCCGAATATTTCCAGCCTGATATGTAACGGTTAAACGCTTTCAACCCTGTCAGTTCATACCAGACTAACTGGGTACCAAACAATGCTCGCGTATTCTAAAGCAGGTTAGACTGAGCTACAGTAAATGGTTTTGAGGCAATAGGGTAATGCAAATCATGCATCATCAATGATTCCGACCCACAAGTGGAGCGGGTGTGCTAGATCGGAGTCGGAAACAAATCCGACCCTACCTCGGGGACCTACTACCGTAAGGACTTCAAGTTGACTCGAATGATAAGTAGTTGTAAGAAAGCATAAACGACTCCGACCCACTGGTGCAGCGAGTTTGGGTCAGGTCAAAGTAGGTTTAATACTCGACCCGTACTCGCTGCACCAATGGGCCGGAATCGCTTATGCTTTAGGATTCGTATCTACCGAAATCGTTGCACATAC] [+] EMBL BM593454 [CCGCAACAACCGGAGTACCAGCAACCAGCTTCAATGTACTACCAGCAACAACCCGTACAATACGCACAACCGCCAGCAGCGTACTCACCGTACAACGAGCAGCAGTACAACCGTCGGCCACGACCGGAAACATCTTCGTCATCCCCAGGCTTCTTGGATACGATTGCCCGAGCGTTCGGTTTAAACGCGGGAACCAACTCTAGAGCTCCGCGGCCTGCTACGACCTCCTCCTCGTCTGGGCTGGGGCTTTTGGGGATGGCACTTGGGCTAGGATAGAGAACCCGCAGTTTCGCCACGTAGGGTAACTGTACCAGTTTTCGGCAGTGTACCTATTTTCGGCAGGGTAGCTAAAAACGTGAAATTCTGCACAAATGCGGTAAAAAAATTCACAAAATACAATTTTGTAGTGAAAGTGTACTTATTTGATATTCACATACGAAGTTTCACACCATTTCATTTCGTATTTTCCAAAATATCAAATAAATTGTGCTTTTTTTCGGCAGCTTTGCTGTCAGCCAATCGTTCGGCAGGTTTTGTGATTAAGAGAATCAGAACAGTAAAACAGTG AAAAAGTGGTGTATATTAAAGATTTTATGCTTATTTAATTTATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATGTTCATTT ] [+] EMBL BX610925 [ AGAACAGTAAAACAATGAAAAAAGTGGTACATATTAAAGATTTTATGCTTATTTAATTTATTCAAACTTGTTCGGAATTCTAAAATCACGATAAACAAGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATGTTCAGTTTTGACAGCTCAATTTTGTGGGCTCCTGCCGAAACTCGGAACAATAACACACCTTGGATTTGGCCGAATATTTCCAGCCTGATATGTAACGGTTAAACGCTTTCAACCCTGTCAGTTCATACCAGACTAACTGGGTACCAAACAATGCTCGCGTATTCTAAAGCAGGTTAGACTGAGCTACAGTAAATGGTTTTGAGGCAATAGGGTAATGCAAATCATGCATCATCAATGATTCCGACCCACAAGTGGAGCGGGTGTGCTAGATCGGAGTCGGAAACAAATCCGACCCTACCTCGGGGACCTACTACCGTAAGGACTTCAAGTTGACTCGAATGATAAGTAGTTGTAAGAAAGCATAAACGACTCCGACCCACTGGTGCAGCGAGTTTGGGTCAGGTCAAAGTAGGTTTAATACTCGACCCGTACTCGCTGCACCAATGGGCCGGAATCGCTTATGCTTTAGGATTCGTATCTACCGAAATCGTTGCACATAC] consensusID : consensus_5409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 709 fasta sequence [TTTTCACCGCATTGTGTGCACTTTAGAGGGTTTGTGCAATTCTCATGAAAGTTTTCTCCACATTTGGCGCAAATTTTTTGTCGATTGCAATTAGGGTAACTGTACCAGTTTTCGGCAGTGTACCTATTTTCGGCATGGTAGCTAAAAACGTGAAATTCTTCACAAATGCGGTAAAAAATTTCACAAAATACAATTTTGTAGTGAAGGTGTACTTATTTGATATTCACATACGAAGTTTCACACCATTTCATTACGTATTTTCCAAAATATCAAATAAATTGTGCTTTTTTCGGCAGCTTTGCTGTCAGCCAATCATTCGGCAGGTTTTGTGATTAAGAGAATCAGAACAGTAAAACAATGATAAAGTGGTGTATATTAAAGATTTTATGCTTATTTAATTTATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATTTTCATTTTTGACAGCTCAATGTTGTGGGCTCCTGCTGAAACTCGGAACCATAACACACTTTGAATTTGGCTGAATATTCCTTTTAAAATTGATCAGAACACTACAATGCGTATGGCGACACATAATATAACCTTTCTTGTACCAAATATCACCAATTTTTCGACAAACAATGCACTAACTTAAGAGAAAAATAAATATTTGTAAGCCAGTTTGCACCGTACG] [+] EMBL BX609276 [TTTTCACCGCATTGTGTGCACTTTAGAGGGTTTGTGCAATTCTCATGAAAGTTTTCTCCACATTTGGCGCAAATTTTTTGTCGATTGCAATTAGGGTAACTGTACCAGTTTTCGGCAGTGTACCTATTTTCGGCATGGTAGCTAAAAACGTGAAATTCTTCACAAATGCGGTAAAAAATTTCACAAAATACAATTTTGTAGTGAAGGTGTACTTATTTGATATTCACATACGAAGTTTCACACCATTTCATTACGTATTTTCCAAAATATCAAATAAATTGTGCTTTTTTCGGCAGCTTTGCTGTCAGCCAATCATTCGGCAGGTTTTGTGATTAAGAGAATCAGAACAGTAAAACAATGATAAAGTGGTGTATATTAAAGATTTTATGCTTATTTAATTTATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTTATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATTTTCATTTTTGACAGCTCAATGTTGTGGGCTCCTGCTGAAACTCGGAACCATAACACACTTTGAATTTGGCTGAATATTCCTTTTAAAATTGATCAGAACACTACAATGCGTATGGCGACACATAATATAACCTTTCTTGTACCAAATATCACCAATTTTTCGACAAACAATGCACTAACTTAAGAGAAAAATAAATATTTGTAAGCCAGTTTGCACCGTACG] consensusID : consensus_5409#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [GCAAATCCCCCACGGTTAATTCCGCGTACGTCANTCNCCTATTTTACGCGCTAAATATAACTAATNTCCCGTGTAATNTTGCAAGCAGGGGATGGTTTTAGCCACTTTATTAATCATTATGTCATGATTCTAACTGAATTTAACCGTAGCAATAGACGATGCGCAATCTCAGGTTGCGCCTATATTTATCGGTCGAACGGGTCGATNTTGATATATTTATCTGTCAAAAAAATTTATATATCTCGGACATATAGTGTAACTGTACCAGTCTTTCGGCAGTGTACCTATTTTCGGTAGTGGTAGCTAAAAAGGTGAAATTCTGCACACATCCGGTACAAAAATTTCACAAAATACAATAATTGCAGTGAAACTGTACTTATTTGATATTCACATACGAAGTTTCACACCACTTTCACTTACGTATTTTCCAAAATATCAAATTAATTGTGCTTTTTTTCGGCAGCGTTTGCTGTCAGCAATCGTTCGGGAGGTTTAGTGATTAAGAGAATCAGAAACAGGAAAACAATGAAAAAGTGGTGTATATTATAGATTTTATGCTTATTTAANTATAT] [+] EMBL AL933161 [GCAAATCCCCCACGGTTAATTCCGCGTACGTCANTCNCCTATTTTACGCGCTAAATATAACTAATNTCCCGTGTAATNTTGCAAGCAGGGGATGGTTTTAGCCACTTTATTAATCATTATGTCATGATTCTAACTGAATTTAACCGTAGCAATAGACGATGCGCAATCTCAGGTTGCGCCTATATTTATCGGTCGAACGGGTCGATNTTGATATATTTATCTGTCAAAAAAATTTATATATCTCGGACATATAGTGTAACTGTACCAGTCTTTCGGCAGTGTACCTATTTTCGGTAGTGGTAGCTAAAAAGGTGAAATTCTGCACACATCCGGTACAAAAATTTCACAAAATACAATAATTGCAGTGAAACTGTACTTATTTGATATTCACATACGAAGTTTCACACCACTTTCACTTACGTATTTTCCAAAATATCAAATTAATTGTGCTTTTTTTCGGCAGCGTTTGCTGTCAGCAATCGTTCGGGAGGTTTAGTGATTAAGAGAATCAGAAACAGGAAAACAATGAAAAAGTGGTGTATATTATAGATTTTATGCTTATTTAANTATAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5409#0 CCGCAACAACCGGAGTACCAGCAACCAGCTTCAATGTACTACCAGCAACAACCCGTACAA 60 consensus_5409#1 ------------------------------------------------------------ consensus_5409#2 ---------------------------------------------GCAAATCCCCCACGG 15 consensus_5409#0 TACGCACAACCGCCAGCAGCGTACTCACCGTACAACGAGCAGCAGTACAACCGTCGGCCA 120 consensus_5409#1 ------------------------------------------------------------ consensus_5409#2 TTAATTCCGCGTACGTCANT-CNCCTATTTTACG-CGCTAAATATAACTAATNTCCCGTG 73 consensus_5409#0 CGACCGGAAACATCTTCGTCATCCCCAGGCTTCTTGGATACGATTGCCCGAGCGTTCGGT 180 consensus_5409#1 ------------------------------------------------------------ consensus_5409#2 TAATNTTGCAAGCAGGGGATGGTTTTAGCCACTTTATTAATCATTATGTCATGATTCTAA 133 consensus_5409#0 TTAAACGCGGGAACCAACTCTAGAGCTCCGCGGCCTGCTACGACCTCCTCCTCGTCTGGG 240 consensus_5409#1 ------------------------TTTTCACCGCATTGTGTGCACTTTAGAGGGTTTGTG 36 consensus_5409#2 CTGAATTTAACCGTAGCAATAGACGATGCGCAATCTCAGGTTGCGCCTATATTTATCGGT 193 * * * * * consensus_5409#0 CTGGGGCTTTTGGGGATGGCACTTGGGCTAGGATAGAGAACC-CGCAGTTTCGCCACGTA 299 consensus_5409#1 CAATTCTCATGAAAGTTTTCTCCACATTTGGCGCAAATTTTT-TGTCGATTG--CAATTA 93 consensus_5409#2 CGAACGGGTCGATNTTGATATATTTATCTGTCAAAAAAATTTATATATCTCGGACATATA 253 * * * * * ** ** consensus_5409#0 GGGTAACTGTACCAGT-TTTCGGCAGTGTACCTATTTTCGGCAG-GGTAGCTAAAAACGT 357 consensus_5409#1 GGGTAACTGTACCAGT-TTTCGGCAGTGTACCTATTTTCGGCAT-GGTAGCTAAAAACGT 151 consensus_5409#2 GTGTAACTGTACCAGTCTTTCGGCAGTGTACCTATTTTCGGTAGTGGTAGCTAAAAAGGT 313 * ************** ************************ * ************ ** consensus_5409#0 GAAATTCTGCACAAATGCGGTA-AAAAAATTCACAAAATACAATT-TTGTAGTGAAAGTG 415 consensus_5409#1 GAAATTCTTCACAAATGCGGTA-AAAAATTTCACAAAATACAATT-TTGTAGTGAAGGTG 209 consensus_5409#2 GAAATTCTGCACACATCCGGTACAAAAATTTCACAAAATACAATAATTGCAGTGAAACTG 373 ******** **** ** ***** ***** *************** *** ****** ** consensus_5409#0 TACTTATTTGATATTCACATACGAAGTTTCACACCA-TTTCA-TTTCGTATTTTCCAAAA 473 consensus_5409#1 TACTTATTTGATATTCACATACGAAGTTTCACACCA-TTTCA-TTACGTATTTTCCAAAA 267 consensus_5409#2 TACTTATTTGATATTCACATACGAAGTTTCACACCACTTTCACTTACGTATTTTCCAAAA 433 ************************************ ***** ** ************** consensus_5409#0 TATCAAATAAATTGTGCTTTTTTTCGGCAGC-TTTGCTGTCAGCCAATCGTTCGGCAGGT 532 consensus_5409#1 TATCAAATAAATTGTGCTTTTTT-CGGCAGC-TTTGCTGTCAGCCAATCATTCGGCAGGT 325 consensus_5409#2 TATCAAATTAATTGTGCTTTTTTTCGGCAGCGTTTGCTGTCAGC-AATCGTTCGGGAGGT 492 ******** ************** ******* ************ **** ***** **** consensus_5409#0 TTTGTGATTAAGAGAATCAGAA-CAGTAAAACAGTGAAAAAGTGGTGTATATTAAAGATT 591 consensus_5409#1 TTTGTGATTAAGAGAATCAGAA-CAGTAAAACAATGATAAAGTGGTGTATATTAAAGATT 384 consensus_5409#2 TTAGTGATTAAGAGAATCAGAAACAGGAAAACAATGAAAAAGTGGTGTATATTATAGATT 552 ** ******************* *** ****** *** **************** ***** consensus_5409#0 TTATGCTTATTTAATT-TATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTT 650 consensus_5409#1 TTATGCTTATTTAATT-TATTCTAACTTGTTCGGAATTTTAAAATCACGATAAACAGGTT 443 consensus_5409#2 TTATGCTTATTTAANTATAT---------------------------------------- 572 ************** * *** consensus_5409#0 ATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATGTTCATTTTTGACAGCT 710 consensus_5409#1 ATTTTTCACTTTAAATGCTGCCGAAAATAGGTACACAGTAAATTTTCATTTTTGACAGCT 503 consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 CAATTTTGTGGGCTCCTGCCGAAACTCGGAACAATAACACACCTTGGATTTGGCCGAATA 770 consensus_5409#1 CAATGTTGTGGGCTCCTGCTGAAACTCGGAACCATAACACACTTTGAATTTGGCTGAATA 563 consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 TTTCCAGCCTGATATGTAACGGTTAAACGCTTTCAACCCTGT--CAGTTCATACCA-GAC 827 consensus_5409#1 TTCCT--TTTAAAATTGATCAG---AACACTACAATGCGTATGGCGACACATAATATAAC 618 consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 TAACTGGGTACCAAACAATGCTCGCGTATTCTAAAGCAGGTTAGACTGAGCTACAGTAAA 887 consensus_5409#1 CTTTCTTGTACCAAATATCACCAATTTTTCGACAAACAA--TGCACTAACTTAAGAGAAA 676 consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 TGGTTTTGAGGCAATAGGGTAATGCAAATCATGCATCATCAATGATTCCGACCCACAAGT 947 consensus_5409#1 --AATAAATATTTGTAAGCCAGTTTGCACCGTACG------------------------- 709 consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 GGAGCGGGTGTGCTAGATCGGAGTCGGAAACAAATCCGACCCTACCTCGGGGACCTACTA 1007 consensus_5409#1 ------------------------------------------------------------ consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 CCGTAAGGACTTCAAGTTGACTCGAATGATAAGTAGTTGTAAGAAAGCATAAACGACTCC 1067 consensus_5409#1 ------------------------------------------------------------ consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 GACCCACTGGTGCAGCGAGTTTGGGTCAGGTCAAAGTAGGTTTAATACTCGACCCGTACT 1127 consensus_5409#1 ------------------------------------------------------------ consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 CGCTGCACCAATGGGCCGGAATCGCTTATGCTTTAGGATTCGTATCTACCGAAATCGTTG 1187 consensus_5409#1 ------------------------------------------------------------ consensus_5409#2 ------------------------------------------------------------ consensus_5409#0 CACATAC 1194 consensus_5409#1 ------- consensus_5409#2 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||