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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5410#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1013 fasta sequence
[CCGAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGTCAGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATC-GACAGTCCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAAGAAGCGGAAGTAACGAAACAAACGAA-CAAGATCCTCGTCGAGAACATACTACCGACGCATGTGGGCCCAACACTCCTACACTCAACCTCGCGCCACGCCTGNTACCCACCACCGCACGCTNCCTACNNACCGCACGGGAGCTACCGCAACAACGTGGCCCGCTTAACTGCTCTCGNCAGCCACTCAGCCAAGCATGGGAGGGTCAACCACGGAGCANTTTCGGGTCGAGAACGACGCACANGCAAGCCGCTGCCTTGAAACAGCGGCTGCNTTCTGCAACACCCNGCACGCACTCCAACTCCTGCCAGCAACCCTCTCCGCACCGGCCAGGCCCGAGCGTTTGGCCACGCTCAACCNCTCTCGTGGCAACCNGCGCTGCTTTACTTCCCTTGCACACGCTGCTTGCGCACTGGACAGGACTCTTAAACACTGACTTGGGAACCAGAGACCCTTGTGTCAACACCNGCATTAAGCCNACCTTGCGGGCCCGGGTACCCCGTGCCAGCGGCACANACNATAGGCGCGAAGCATNCNCCCGCATGAANGGACAACCGCAGGTCATGACCGCACGTTCTCCAACTCCGGCATTCCCCTTCTGCACTCATCCAAGNGTAACGTGAGCACATTATCGGCCGGACCACTTCCGCGACATGNA]
[+] EMBL BM578701 [CCGAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGTCAGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATC GACAGTCCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAAGAAGCGGAAGTAACGAAACAAACGAA CAAGATCCTCGTCGAGAACATACTACCGACGCATGTGGGCC ]
[+] EMBL AL933181 [ aggttATTGGATTGATCAGA AGT CGAGTACATTGCGCGGACNGATTATAATTGGAAGCAACAGGTCCTGAAGCAAAAGGAGGAAGCCGAAGTAACGAAACAAACGAAGCAAGATCCTCGTCGAGAACATACTGCCGACGCATGTGGCCGCAACACTCCTACACTCAACCTCGCGCCACGCCTGNTACCCACCACCGCACGCTNCCTACNNACCGCACGGGAGCTACCGCAACAACGTGGCCCGCTTAACTGCTCTCGNCAGCCACTCAGCCAAGCATGGGAGGGTCAACCACGGAGCANTTTCGGGTCGAGAACGACGCACANGCAAGCCGCTGCCTTGAAACAGCGGCTGCNTTCTGCAACACCCNGCACGCACTCCAACTCCTGCCAGCAACCCTCTCCGCACCGGCCAGGCCCGAGCGTTTGGCCACGCTCAACCNCTCTCGTGGCAACCNGCGCTGCTTTACTTCCCTTGCACACGCTGCTTGCGCACTGGACAGGACTCTTAAACACTGACTTGGGAACCAGAGACCCTTGTGTCAACACCNGCATTAAGCCNACCTTGCGGGCCCGGGTACCCCGTGCCAGCGGCACANACNATAGGCGCGAAGCATNCNCCCGCATGAANGGACAACCGCAGGTCATGACCGCACGTTCTCCAACTCCGGCATTCCCCTTCTGCACTCATCCAAGNGTAACGTGAGCACATTATCGGCCGGACCACTTCCGCGACATGNA]
consensusID : consensus_5410#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 849 fasta sequence
[GCAGATTCGGCACGATGGATACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTTGATCCAAAGGTCTCTCATCTCATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAGTCCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAGGAAGCCGAAGTAACGAAACAAACGAACAAGATCCTCGTCGAGAACATACTGCCGACGCATGTGGCCGAAATCTACATCAATCGGCAGCTGAAAAACGAGTTCTACAACGAGGAGTACGAAAACGTGGCCGTTATGTTCGCCACCATCACCAACATGGAGGTCAACACGGACATTTCGGTCGAGAACGAGAAGAGCGTGCTGAAGGTGTTGAACGAGATCATCTGCGACTTCGACGAGCGGTTGCAGTACTTTGACGGGTATCTGAAGGTGGAGAAGATTAAAGTGGCCGGCTGGACGTACATGGCGGCCTGCGGACTGGATCCGGGCCGGTGCGATTCATCGTCCTCGCTCAGCGGCTACCGCTCGGTGTCCGGTATGACGCGTACCTCGCTCATGACCAACGGTCGCCGTAGCCTTTAATCCGGCACCTCGCTGGGAGGGTGGCGCACAAAAGCGGAGCACCANGCACGGCGGCAGCAATTCGAGGCAACNAGTCGCCCATAGCAACAACGTCAACGATCGTTATGGCCGANGTTTTGCGCTCGAAGCTGATGCGCGTGTTGGGCGANTTTAGGCAATGAAAACTTCAAACAAACCAGCCCAGGGATTGCTGACGGGTNGGTATTCGCACNGGGAAGGTAATGGGGGTTGGTAAGGTCCCAGCA]
[+] EMBL BX467916 [GCAGATTCGGCACGATGGATACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTTGATCCAAAGGTCTCTCATCTCATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAGTCCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAGGAAGCCGAAGTAACGAAACAAACGAACAAGATCCTCGTCGAGAACATACTGCCGACGCATGTGGCCGAAATCTACATCAATCGGCAGCTGAAAAACGAGTTCTACAACGAGGAGTACGAAAACGTGGCCGTTATGTTCGCCACCATCACCAACATGGAGGTCAACACGGACATTTCGGTCGAGAACGAGAAGAGCGTGCTGAAGGTGTTGAACGAGATCATCTGCGACTTCGACGAGCGGTTGCAGTACTTTGACGGGTATCTGAAGGTGGAGAAGATTAAAGTGGCCGGCTGGACGTACATGGCGGCCTGCGGACTGGATCCGGGCCGGTGCGATTCATCGTCCTCGCTCAGCGGCTACCGCTCGGTGTCCGGTATGACGCGTACCTCGCTCATGACCAACGGTCGCCGTAGCCTTTAATCCGGCACCTCGCTGGGAGGGTGGCGCACAAAAGCGGAGCACCANGCACGGCGGCAGCAATTCGAGGCAACNAGTCGCCCATAGCAACAACGTCAACGATCGTTATGGCCGANGTTTTGCGCTCGAAGCTGATGCGCGTGTTGGGCGANTTTAGGCAATGAAAACTTCAAACAAACCAGCCCAGGGATTGCTGACGGGTNGGTATTCGCACNGGGAAGGTAATGGGGGTTGGTAAGGTCCCAGCA]
consensusID : consensus_5410#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence
[CCGGGTTCAAGAAGGTGTGGGATGTATACACACCCTACTCGATCGACGATCTGCTGCGTGTGCGGAAACCTCAGTCGAGGGTAATGGGAATATTTTACGACTTTTCCAACGACATCATGAGCAACTTTGTGATACGGACGGTGATCTATCTGATTACGATCGCGTTACTAGTGGTATGTTCGTTGATGTATCTGATCGAGTGTAATTACGATCTGTTGGAGCAAACGTCTACTACCAGCGTACCAGTGAGTGACAATCTAACGAGTCTGTTTCAAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGGTAAGTGAGTCCAAGGCTTGTGCAATATGATCGACTAATCTGCTGTACTGCGATGTCAAAAATGTTTCGTTTCTTCCCTCCAGTCAGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAG]
[+] EMBL BM654244 [CCGGGTTCAAGAAGGTGTGGGATGTATACACACCCTACTCGATCGACGATCTGCTGCGTGTGCGGAAACCTCAGTCGAGGGTAATGGGAATATTTTACGACTTTTCCAACGACATCATGAGCAACTTTGTGATACGGACGGTGATCTATCTGATTACGATCGCGTTACTAGTGGTATGTTCGTTGATGTATCTGATCGAGTGTAATTACGATCTGTTGGAGCAAACGTCTACTACCAGCGTACCAGTGAGTGACAATCTAACGAGTCTGTTTCAAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGGTAAGTGAGTCCAAGGCTTGTGCAATATGATCGACTAATCTGCTGTACTGCGATGTCAAAAATGTTTCGTTTCTTCCCTCCAGTCAGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5410#0 CCGAGAAAACCAAACATCGCTCGATCCTATGGCCAAAAACTTTTGTACAAATCCATGGTC 60
consensus_5410#2 ------------------------------------------------------------
consensus_5410#1 ------------------------------------------------------------
consensus_5410#0 AGTCACCCAGTGTCTTACACTGGCGATCGGGATGGCTTTCCTGTTTCTCCGGATACACTT 120
consensus_5410#2 -------------------CCGG-GTTCAAGAAGGTGTG---GGATGTATACACACCCTA 37
consensus_5410#1 ------------------------------------------------------------
consensus_5410#0 CCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTATTGCTGGGCAATTTTTGA 180
consensus_5410#2 CTCGATCGACGATCTGCTGCGTGTGCGGAAA-----CCTCAGTCGA-GGGTAATG--GGA 89
consensus_5410#1 ------------------------------------------------GCAGATTCGGCA 12
* ** *
consensus_5410#0 CGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTCGATCCAAA-GG 239
consensus_5410#2 ATATTT-TACGACTTTTCCAACGACATCATGAGC---AACTTTG----TGATACGGACGG 141
consensus_5410#1 CGAT------GGATACTTTGATAGCAGTGCAAGCATGAACCCTGGTCTTGATCCAAA-GG 65
** * * * ** *** *** ** *** * * **
consensus_5410#0 TCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAGT 299
consensus_5410#2 TGATCTATCTGATTACGATCGCGTTACTAGTGGT-ATGTT-CGTTGATGTATCTGAT--- 196
consensus_5410#1 TCTCTCATCTCATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATTGATCGACAGT 125
* **** ** **** ** * *** * ** ** * *** * **
consensus_5410#0 CCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAAG 359
consensus_5410#2 -CGAGTGTAAT-TACGATCTG-------TTGGAGCAAACGTCTACTAC----CAGCGTAC 243
consensus_5410#1 CCGAGTACATTGCGCGGACAGATTATAATTGGAAGCAACAGCTCCTGAAGCAAAAGGAGG 185
***** * * ** * * ***** *** ** ** * *
consensus_5410#0 AAGCGGAAGTAACGAAACAAACGAACAAGATCCTCGTCGAGAACATACTACCGACGCATG 419
consensus_5410#2 CAGTG--AGTGAC-AATCTAACGAGTCTGTTTCAAGAAAACCAAACATCGCTCGATCCTA 300
consensus_5410#1 AAGCCGAAGTAACGAAACAAACGAACAAGATCCTCGTCGAGAACATACTGCCGACGCATG 245
** *** ** ** * ***** * * * * * * * * * * *
consensus_5410#0 TGGGCCCAAC--ACTCCTACACTCAACCTCGCGCCACGCCTGNTACCCACCACCGCACGC 477
consensus_5410#2 TGG-CCAAAA--ACTTTTGTACAAATCCATGGGTAAG---TGAGTCCAAGGCTTGTGCAA 354
consensus_5410#1 TGGCCGAAATCTACATCAATCGGCAGCTGAAAAACGAGTTCTACAACGAGGAGTACGAAA 305
*** * ** ** * * * *
consensus_5410#0 TNCCTACNNACCGCACGGGAGCTACCGC-AACAACGTGGCCCGCTTAACTGCTCTCGNCA 536
consensus_5410#2 TATG-ATCGACTAATCTGCTG-TACTGC-GATGTCAAAAATGTTTCGTTTCTTCCCTCCA 411
consensus_5410#1 ACGTGGCCGTTATGTTCGCCACCATCACCAACATGGAGGTCAACACGGACATTTCGGTCG 365
* * * * * *
consensus_5410#0 GCCACTCAGCCAA-GC-ATGGGAGGGTCAACCACGGAGCANTTTCGGGTCGAGAACGACG 594
consensus_5410#2 GTCAGTCACCCAGTGT-CTTACACTGGCGATCG-GGATGGCTTTCCTGTTTCTCCGGATA 469
consensus_5410#1 AGAACGAGAAGAGCGTGCTGAAGGTGTTGAACG-AGATCATCTGCGACTTCGACGAGCGG 424
* * * * * * * ** * * * *
consensus_5410#0 C-ACAN---GCAAGCCGCTGCCTTGAAACAGC-GGCTGCNTTCTGCAACACCCNGCACGC 649
consensus_5410#2 C-ACTTCCTGCTGAAGGCAGCAGTGGGACTGCTGATCTTCTTCTTCTAT-TGCTGGGCAA 527
consensus_5410#1 TTGCAGTACTTTGACGGGTATCTGAAGGTGGAGAAGATTAAAGTGGCCGGCTGGACGTAC 484
* * * *
consensus_5410#0 ACTCCAACTCCTGCCAGCAACCCTCTCCGCACCGGCCAGGCCCGAGCGTTTGGCCACGCT 709
consensus_5410#2 TTTTTGACGATCTGTACTATTACTTTGATAGCAGTGCAAGCATGAAC-CCTGGTCTCGAT 586
consensus_5410#1 ATGGCGGCCTGCGGACTGGATCCGGGCCGGTGCGATTCATCGTCCTCGCTCAGCGGCTAC 544
* * * * * * *
consensus_5410#0 CAACCNCTCTCGTGGCAACCNGCGCTGCTTTACTTCCCTTGCACACGCTGCTTGCGC--A 767
consensus_5410#2 CCAAAGGTCTCACATCTGATGCTGATCCTCTTCATTGTGATCATATTTCATTGGATT--G 644
consensus_5410#1 CGCTCGGTGTCCGGTATGACGCGTACCTCGCTCATGACCAACGGTCGCCGTAGCCTTTAA 604
* * ** * * *
consensus_5410#0 CTGGACAGGACTCTTAAACACTGACTTGGGAACCAGAGACCCTTGTGTCAACACCNGCA- 826
consensus_5410#2 ATCGACAG---------------------------------------------------- 652
consensus_5410#1 TCCGGCACCTCGCTGGGAGGGTGGCGCACAAAAGCGGAGCACCANGCACGGCGGCAGCAA 664
* **
consensus_5410#0 -TTAAGCCNACCTTGCGGGCCCGGGTACCCCGTGCCAG-------CGGCACANACNATAG 878
consensus_5410#2 ------------------------------------------------------------
consensus_5410#1 TTCGAGGCAACNAGTCGCCCATAGCAACAACGTCAACGATCGTTATGGCCGANGTTTTGC 724
consensus_5410#0 GCGCGAAGCATNCNCCCGCATGAANGGACAACCGCAGGTCATGACCGCACGTTCTCCAAC 938
consensus_5410#2 ------------------------------------------------------------
consensus_5410#1 GCTCGAAGCTGATGCGCGTGTTGGGCGANTTTAGGCAATGAAAACTTCAAACAAACCAGC 784
consensus_5410#0 TCCGGCATTCCCCTTCTGCACTCATCCAAGNGTAACGTGAGCACATTATCGGCCGGACCA 998
consensus_5410#2 ------------------------------------------------------------
consensus_5410#1 CCAGGGATTGCTGACGGGTNGGTATTCGCACNGGGAAGGTAATGGGGGTTGGTAAGGTCC 844
consensus_5410#0 CTTCCGCGACATGNA 1013
consensus_5410#2 ---------------
consensus_5410#1 CAGCA---------- 849
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||