These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5411#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 828 fasta sequence [CGCTCTCGATCGGGCTGGTACAGCGTGACCAGGAGCAGCTGCTGAAGCGCACCGAGTCAACCGAGCGGCAGCAGGAGAGTGGCGAGGAAGCGGACGATAGCTGGCATCTGCTGGAGCGTTTCCGACTACCGCTGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACTACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAAGCCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGAGGAGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAATTACTGCGCAATCCGGACTCCTGTGCGGTTTATGGACAAGCGATGTTTGCCAGCTTGGAGTGGAATCAAATTAAGAATCCAAACACAAAGCTGGAACGTTACGCCTGCCATCTGTACGCCCAAACGCTGCGCCATCTGCCGGTAATACTGCGCCGATGGTTCAACGGGCTAAACCATCGCTACTCCACGATCGTGAGCAAGATAACGGCCAACTCGGTGTCGGGCTTGCTGTGCCAGGAGGAGTTCCAGGCCCTGCTGGAACGCAAGGACCGGCAGGACAACATGCAGATCAAGGTGCACTCGGCCCTGCGCCAGGTGATGGCCGTGTACTCGATCGACGAGGCAAAGGTGGAGCTGCACATAACGCTGCCGAGCAACTTTCCGCTCGGTGCGGTCACGGTGGAGGGTGGCAAGCAGATCGGCGGAC] [+] EMBL BX618778 [CGCTCTCGATCGGGCTGGTACAGCGTGACCAGGAGCAGCTGCTGAAGCGCACCGAGTCAACCGAGCGGCAGCAGGAGAGTGGCGAGGAAGCGGACGATAGCTGGCATCTGCTGGAGCGTTTCCGACTACCGCTGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACTACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAAGCCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGAGGAGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAAT ] [+] EMBL BX618855 [ ACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAAGCCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCG ] [+] EMBL BX617499 [ CCGAGCAGGAAAAGCTGGCCGAAGCCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGAGGAGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAATTACTGCGCAATCCGGACTCCTGTGCGGTTTATGGACAAGCGATGTTTGCCAGCTTGGAGTGGAATCAAATTAAGAATCCAAACACAAAGCTGGAACGTTACGCCTGCCATCTGTACGCCCAAACGCTGCGCCATCTGCCGGTAATACTGCGCCGATGGTTCAACGGGCTAAACCATCGCTACTCCACGATCGTGAGCAAGATAACGGCCAACTCGGTGTCGGGCTTGCTGTGCCAGGAGGAGTTCCAGGCCCTGCTGGAACGCAAGGACCGGCAGGACAACATGCAGATCAAGGTGCACTCGGCCCTGCGCCAGGTGATGGCCGTGTACTCGATCGACGAGGCAAAGGTGGAGCTGCACATAACGCTGCCGAGCAACTTTCCGCTCGGTGCGGTCACGGTGGAGGGTGGCAAGCAGATCGGCGGAC] consensusID : consensus_5411#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [GAAATTTCCCCCGAGGTTNCATGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACTACAAACCGGCCGACAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAGGGCCAGATCGCACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACG] [+] EMBL AL933199 [GAAATTTCCCCCGAGGTTNCATGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCACTACAAACCGGCCGACAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAGGGCCAGATCGCACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGCCAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5411#0 CGCTCTCGATCGGGCTGGTACAGCGTGACCAGGAGCAGCTGCTGAAGCGCACCGAGTCAA 60 consensus_5411#1 ------------------------------------------------------------ consensus_5411#0 CCGAGCGGCAGCAGGAGAGTGGCGAGGAAGCGGACGATAGCTGGCATCTGCTGGAGCGTT 120 consensus_5411#1 ----------------------------------------------------GAAATTTC 8 * * * consensus_5411#0 TCCGACTACCGC-TGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCAC 179 consensus_5411#1 CCCCGAGGTTNCATGGACGAGTACCAGGATTTGCTGCACGAGTTTGTGGCCGATTTCCAC 68 ** * *********************************************** consensus_5411#0 TACAAACCGGCCGACCAGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAA 239 consensus_5411#1 TACAAACCGGCCGAC-AGGAGACGGCCACGAGCGTCGCCGAGCAGGAAAAGCTGGCCGAG 127 *************** ******************************************* consensus_5411#0 G-CCAGATCACACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGC 298 consensus_5411#1 GGCCAGATCGCACTGTCTGTCCTACCTGCTGCTGTGGGACTGTATTCTCGGTATCTGTGC 187 * ******* ************************************************** consensus_5411#0 CAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACGAGTTTGA 358 consensus_5411#1 CAAAGCTCCGTCCGAGCTGCGATCGATCTACACTTCCTGGATATCGCGCAACG------- 240 ***************************************************** consensus_5411#0 GGAGCTGCTCCTGCCCGTACTCTTCAAGCTGATGCCACCGGAATTACTGCGCAATCCGGA 418 consensus_5411#1 ------------------------------------------------------------ consensus_5411#0 CTCCTGTGCGGTTTATGGACAAGCGATGTTTGCCAGCTTGGAGTGGAATCAAATTAAGAA 478 consensus_5411#1 ------------------------------------------------------------ consensus_5411#0 TCCAAACACAAAGCTGGAACGTTACGCCTGCCATCTGTACGCCCAAACGCTGCGCCATCT 538 consensus_5411#1 ------------------------------------------------------------ consensus_5411#0 GCCGGTAATACTGCGCCGATGGTTCAACGGGCTAAACCATCGCTACTCCACGATCGTGAG 598 consensus_5411#1 ------------------------------------------------------------ consensus_5411#0 CAAGATAACGGCCAACTCGGTGTCGGGCTTGCTGTGCCAGGAGGAGTTCCAGGCCCTGCT 658 consensus_5411#1 ------------------------------------------------------------ consensus_5411#0 GGAACGCAAGGACCGGCAGGACAACATGCAGATCAAGGTGCACTCGGCCCTGCGCCAGGT 718 consensus_5411#1 ------------------------------------------------------------ consensus_5411#0 GATGGCCGTGTACTCGATCGACGAGGCAAAGGTGGAGCTGCACATAACGCTGCCGAGCAA 778 consensus_5411#1 ------------------------------------------------------------ consensus_5411#0 CTTTCCGCTCGGTGCGGTCACGGTGGAGGGTGGCAAGCAGATCGGCGGAC 828 consensus_5411#1 -------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||