These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5417#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 893 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCACAAATGTAGGGAAAGATACAGAACTAATAGTAGCGCAGGGGGTGCGTGAGTGCGTGGGGCAGGGGGGTCATATTTATATAAGTGCACGCGCATCGTACCGGCATGTACCGAAATGAAACGAGCTATAGAGACACGTATCTGCCCGA-ACTGGGCTGGTGAGAAATGGAATTGAATGTAAGTTAGTTCTACTTGTTACTACTATACATAGCGTGTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCTT-CCGGGAAAGGGGAGGAGAGGAGGTGGGTGGGAAATATTGTTGGACCG-TTTTTTTTTTAACAAAAGCTACGACAACAAACAAAGTAAACTGACAAAAGAAATGGGTTTTCAGATCGCGAAAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGGTTTTGCTGCTTCTGGGTCCCAATTTTTAGTC-TTAGAAGTAACCAAGAAGAA-AAGGTAGATCAAAGCTTAACTATGCAACTATAGTTTGTAAAGCGATAAAGGGACGGACGCGATTCAACCTGTTCGATGGATTATATT-AA-A-TATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCGAAACCCCGTAAAGAAAAGAAAAACCAGATAAATTGTA-GAGTAATGTTGCAAAACTCCAAATCATTTCTAAAGGGAACAGGTGGAG-AAAGATATCCTCCCTATGGGCGT-AATGACGGGCGCAGAATAAATTACACCGTTTGCCGCTATTACTGGTGGAAGGATCAATTTTAAAACCATTCAAAGTCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGAAGTGTGTGTGTGT] [+] EMBL BM609814 [CCGCGGACGCGTGGGCGGACGCGTGGGCACAAATGTAGGGAAAGATACAGAACTAATAGTAGCGCAGGGGGTGCGTGAGTGCGTGGGGCAGGGGGGTCATATTTATATAAGTGCACGCGCATCGTACCGGCATGTACCGAAATGAAACGAGCTATAGAGACACGTATCTGCCCGA ACTGGGCTGGTGAGAAATGGAATTGAATGTAAGTTAGTTCTACTTGTTACTACTATACATAGCGTGTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCTT CCGGGAAAGGGGAGGAGAGGAGGTGGGTGGGAAATATTGTTGGACCG TTTTTTTTTTAACAAAAGCTACGACAACAAACAAAGTAAACTGACAAAAGAAATGGGTTTTCAGATCGCGAAAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGATTTTGCTGCTTCTGGGTCCCACTTTTTAGTCTTTAGAAGTAACCAAGAAGAA AAGGTAGATCAAAGCTTAACTATGCAACTATAGTTTGTAAAGCGATAAAGGGACGGACGCGATTCAACCTGTTCGATGGATTATATT AA A TATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCAAAAC ] [+] EMBL AL933457 [ cnCGTATCTGCCCGANACTGGGCTGGTGAGAAATGGAATTGAATGT AGTTAGTTCTACTTGTTACTACTATACATAGCGTGTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCTTCCCGGGAAAGTGGAGGAGAGGAGGTGGGTGGG AATATTGTTGGACCGTTTTTTTTTTTAACAAAAGCCACGACAACAAACAAAGTAAACTGACAAAAGAAATGGGTTTTCAGATCGCAAAAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCTGGGAAGGTTTGGTGGTTTTGCTGCTTCTGGGTCCCAATTTTTAGTC TTAGAAGTAACCAAGAAGAANAAGGTAGATCAAAGCTTAACTATGCAACTATAGTTTGTAAAGCGATGAAGGGACGGACGCGATTCAACCTGTTCGATGGATTATATTCAACACTATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCGAAACCCCGTAAAGAAAAGAAAAACCAGATAAATTGTACGAGTAATGTTGCAAAACTCCAAATCATTTCTAAAGGGAACAGGTGGAGAAAAGATATCCTCCCTATGGGCGT AATGACGG ] [+] EMBL BM620950 [ AAATGGGTTTTCAGATCGCGAAAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGGTTTTGCTGCTTCTGGATCCCAATTTTTAGTC TTAGAAGTAACCACGAAGAA AAGGTAGATCAAAGCTTAACTATGCAACTATAGTTTGTAAAGCGGTAAAGGGACAGAAGCGATTCAACCTGTTCGATGGATTATATT AA A TATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAAGCGAAACCCCGTAAAGAAAAGAAAAACCAGATAAATTGTA GAATAATGTTGCAGAACTCCAAATCATTTATAAAGGGAACAGGTGGAG AAAGATATCCTCCCTACGGGCGTAAATGGC AGCGCAGAATAAATTACACCGTTTGCCGCTATTACTGGTGGAAGGATCAATTTTAAAACCATTCAAAGTCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGAAGTGTGTGTGTGT] consensusID : consensus_5417#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 674 fasta sequence [CCGCCCACGCGTCCGGATAAATTGTAGAGTAATGTTGCAAAACTCCAAATCATTTCTAAAGGGAACAGGTGGAGAAAGATATCCTCCCTATGGGCGTAAATGACGGCGCAGAATAAATTACACCGTTTGCCGCAAATACTGGGGGAAGGATCAATTTTAAAACCATTCAAAATCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGATGTGTGTGTGTGTGCGTGTGTGCGATGATCTCGGCTTACAAATCAAACAGACCGCACGCGCATGCCAAGGGAGGGAAGGGAAGTATTTCGTTTTAACGAACGTCGCATTCTGGGTCGTCCGCATCCTGCGCCCTGCCCTGGAGCACGCGCACCGGAATCGATACCATCTAGTCGCGAATGTCAACCAAATACGAATGATTAAAACAACTGAGCTGCTGGTACACGCTTGCGCTGAGTCATAGGTGTGTAAGTGTAATTTACCAAAAATAAATCTGAAATGGTTTAACCTCTGGCTTAAGAAAAACGTATAACATGGGCAGAGTGGGGACTTTAGTTTGGTGGTAAAATATTTACGAATTCAAAGGGACAACAACGGCCGTTTCATGTCCGAAGTGGTAGGGGAGAAGACATGCACTGGGGCAATTTTTGTTTTGCAATTAACCGGCGAGTGCACGGAGC] [+] EMBL BM654762 [CCGCCCACGCGTCCGGATAAATTGTAGAGTAATGTTGCAAAACTCCAAATCATTTCTAAAGGGAACAGGTGGAGAAAGATATCCTCCCTATGGGCGTAAATGACGGCGCAGAATAAATTACACCGTTTGCCGCAAATACTGGGGGAAGGATCAATTTTAAAACCATTCAAAATCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGATGTGTGTGTGTGTGCGTGTGTGCGATGATCTCGGCTTACAAATCAAACAGACCGCACGCGCATGCCAAGGGAGGGAAGGGAAGTATTTCGTTTTAACGAACGTCGCATTCTGGGTCGTCCGCATCCTGCGCCCTGCCCTGGAGCACGCGCACCGGAATCGATACCATCTAGTCGCGAATGTCAACCAAATACGAATGATTAAAACAACTGAGCTGCTGGTACACGCTTGCGCTGAGTCATAGGTGTGTAAGTGTAATTTACCAAAAATAAATCTGAAATGGTTTAACCTCTGGCTTAAGAAAAACGTATAACATGGGCAGAGTGGGGACTTTAGTTTGGTGGTAAAATATTTACGAATTCAAAGGGACAACAACGGCCGTTTCATGTCCGAAGTGGTAGGGGAGAAGACATGCACTGGGGCAATTTTTGTTTTGCAATTAACCGGCGAGTGCACGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5417#0 CCGCGGACGCGTGGGCGGACGCGTGGGCACAAAT-GTAGGGAAA-GATACAGAACTAATA 58 consensus_5417#1 ------------CCGCCCACGCGTCCGGATAAATTGTAGAGTAATGTTGCAAAACTCCAA 48 ** ****** * * **** **** * ** * * ** **** * consensus_5417#0 GTAGCGCAGGGGGTGCGTGAGTGCGTGGGGCAGGGGGGTCATATTTATATAAGTGCACGC 118 consensus_5417#1 ATCATTTCTAAAGGGAACAGGTG-GAGAAAGATATCCTCCCTATGGGCGTAAATGACGGC 107 * * * *** * * * * *** *** ** ** consensus_5417#0 GCATCGTAC----CGGCATGTACCGAAATGAAACGAGCTATAGAGACACGTATCTGCCCG 174 consensus_5417#1 GCAGAATAAATTACACCGTTTGCCGCAA--ATACTGGGGGAAGGATCA-ATTTTAAAACC 164 *** ** * * * * *** ** * ** * ** ** * * * consensus_5417#0 AACTGGGCTGGTGAGAAATGGAATTGAATGTAAGTTAGT-TCTACTTGTTACTACTATAC 233 consensus_5417#1 ATTCAAAATCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGATGTGTGTGT 224 * * * * * * * * * * *** * ** * * * * consensus_5417#0 ATAGCGTGTGTGCGTGTTATTTTCTGCCATACCACTCGTGACGATGGTTTATTCATCGCT 293 consensus_5417#1 GT-GTGCGTGTGTGCGATGATCTCGGCT-TACAAATCAAACAGACCGCACGCGCA----T 278 * * * ***** * * * * ** ** *** * ** ** * ** * consensus_5417#0 TCCGGGAAAGGGGAGGAGAGGAGGTGGGTGGGAAATATTGTTGGACCGTTTTTTTTTTAA 353 consensus_5417#1 GCCAAGGGAGGGAAGGGAAGTATTTCGTTTT-AACGAACGTCG---CATTCTGGGTCGTC 334 ** * **** *** ** * * * * ** * ** * * ** * * consensus_5417#0 CAAAAGCTACGACAACAAACAAAGTAAACTGACAAAAGAAATGG-GTTTTCAGATCGCGA 412 consensus_5417#1 CGCATCCTGCGCC--CTGCCCTGGAGCACGCGCACCGGAATCGATACCATCTAGTCGCGA 392 * * ** ** * * * * ** ** *** * ** ****** consensus_5417#0 AAGAGAATATAGATGTATATTTATTGGCCAACCAACCGTCCGGGAAGGTTTGGTGGTTTT 472 consensus_5417#1 ATGTCAAC-CAAATACGAATGATTAAAACAACTGAGCTGCTGGTACA------CGCTTGC 445 * * ** * ** ** * **** * * * ** * * ** consensus_5417#0 GCTGCTTC-TGGGTCCCAATTTTTAGTCTTAGAAGTAACCAAGAAGAAAAGGTAGATCAA 531 consensus_5417#1 GCTGAGTCATAGGTGTGTAAGTGTAAT-TTACCAAAAATAAATCTGAAATGGT---TTAA 501 **** ** * *** * * ** * *** * ** ** **** *** * ** consensus_5417#0 AGCTTAACTATGCAACTATAGTTTGTAAAGCGATAAAGGGACGGACGCGATTCAACCTGT 591 consensus_5417#1 CCTCTGGCT---TAAGAAAAACGTATAACATGGGCAGAGTGGGGAC----TTTA----GT 550 * ** ** * * * *** * * * **** ** * ** consensus_5417#0 TCGATGGATTATATTAAATATGTATGTGCCTGTCTCGTGATCATCAGCAGAGAGAACAAA 651 consensus_5417#1 TTGGTGG------TAAAATATTTACGAAT---TCAAAGGGACAACAACGGCCGTTTCATG 601 * * *** * ****** ** * ** * ** ** * * ** consensus_5417#0 GCGAAACCCCGTAAAGAAAAGAAAAACCAGATAAATTGTAGAGTAATGTTGCAAAACTCC 711 consensus_5417#1 -------TCCGAAGTGGTAGGGGAGA--AGACATGCACTGGGGCAATTTT---TGTTTTG 649 *** * * * * * * *** * * * * *** ** * consensus_5417#0 AAATCATTTCTAAAGGGAACAGGTGGAGAAAGATATCCTCCCTATGGGCGTAATGACGGG 771 consensus_5417#1 CAATTAACCGGCGAGTGCACGGAGC----------------------------------- 674 *** * ** * ** * consensus_5417#0 CGCAGAATAAATTACACCGTTTGCCGCTATTACTGGTGGAAGGATCAATTTTAAAACCAT 831 consensus_5417#1 ------------------------------------------------------------ consensus_5417#0 TCAAAGTCGAAAAAGGCGTTACCGTTTTTGCATTAACATAGACGTACGAAGTGTGTGTGT 891 consensus_5417#1 ------------------------------------------------------------ consensus_5417#0 GT 893 consensus_5417#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||