These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5423#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGGGGAGAACGGTACGTGGCAGTCGCTCCAAAACTCAAACCTCGGGCAGAAGGAGATGAAGATTCGGAAGAAGAAGAAGAAGAAGAAAGCTGGAAGTTTGCCAATAAGCGGAAAAAACGAGAGCAGCAATGGCAAGAACAGGATAATGATGAAGAACTGGACGTTGGGCAGAACTATACGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAATGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGGCTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCACCAACCGATTTCCAAGTAAATCTGATAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTGTTTTGACGGCGAAGATGGTGATAC] [+] EMBL BM597916 [CCGGGGAGAACGGTACGTGGCAGTCGCTCCAAAACTCAAACCTCGGGCAGAAGGAGATGAAGATTCGGAAGAAGAAGAAGAAGAAGAAAGCTGGAAGTTTGCCAATAAGCGGAAAAAACGAGAGCAGCAATGGCAAGAACAGGATAATGATGAAGAACTGGACGTTGGGCAGAACTATACGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAATGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGGCTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCACCAACCGATTTCCAAGTAAATCTGATAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTGTTTTGACGGCGAAGATGGTGATAC] consensusID : consensus_5423#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [CCGGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAATCAGTTGACACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCCTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAACCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCAGCCAAACAGGCTCAACAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAATCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGACAGCCAAACAGGCTCAACAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTTTTTGACGCAGAGGATGGTGATACAAACATGAAATCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGGAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTT] [+] EMBL BM590387 [CCGGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAATCAGTTGACACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCCTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAACCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCAGCCAAACAGGCTCAACAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAATCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGACAGCCAAACAGGCTCAACAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTTTTTGACGCAGAGGATGGTGATACAAACATGAAATCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGGAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTT] consensusID : consensus_5423#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 636 fasta sequence [CCGCCCACGCGTCCGGAACTATACGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAATGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGGCTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCACCAACCGATTTCCAAGTAAATCTGATAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAATATGAAACCCGTTGCCACTAACCGATTTCCCAGCAAATCTGAAAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCTCAGCAAGGAATTAAACCTTTCGCTGGCAACAAAGTGGGTGT] [+] EMBL BM653671 [CCGCCCACGCGTCCGGAACTATACGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAATGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGGCTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTCGCTGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCACCAACCGATTTCCAAGTAAATCTGATAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCCCAGCAAGGAATTAAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAATATGAAACCCGTTGCCACTAACCGATTTCCCAGCAAATCTGAAAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAACAGGCTCAGCAAGGAATTAAACCTTTCGCTGGCAACAAAGTGGGTGT] consensusID : consensus_5423#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [AGAATCCCCGAGGTTTATGCAAACAGGCCCAGCAAGGCAATTAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGTGTGATACAAACATGAAACCAGTTCCCACCATGCGTTTTCCCAGTAAATCTGATAGACAAAGCGATCTTCATACCGTCTTGGGCGGCCAAACAGTGCCCAGCAATAGTAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTTTGGCGCGGATGATAATGATAATGAACGGGCAGAATTTACTTCCAACCAACCTAAAAAGCGACAATTTCAATAGCAAATCAGACCTTCATCCTTCGGCACGGACGGCATGGTACGGCTANAAGCAAGCGCGAACATGGAACTAAAATCTTTGATGGGAATGGTACGAGTGCAGCTTTCCACCAAACGCACACCCTCNNAAACACACTGATCTTCAACCCATCGTGGGGCGGCTACAACAAGGCACAGAGGCCGGGACATCTAAAACCCATCTANGCCCGGGCCCACACNCCGCATCGCCCCTNCCCCAACNCGCACTNNNGANTCGCACTCACATNTGACCCGCGCTCG] [+] EMBL AL933532 [AGAATCCCCGAGGTTTATGCAAACAGGCCCAGCAAGGCAATTAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGTGTGATACAAACATGAAACCAGTTCCCACCATGCGTTTTCCCAGTAAATCTGATAGACAAAGCGATCTTCATACCGTCTTGGGCGGCCAAACAGTGCCCAGCAATAGTAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTTTGGCGCGGATGATAATGATAATGAACGGGCAGAATTTACTTCCAACCAACCTAAAAAGCGACAATTTCAATAGCAAATCAGACCTTCATCCTTCGGCACGGACGGCATGGTACGGCTANAAGCAAGCGCGAACATGGAACTAAAATCTTTGATGGGAATGGTACGAGTGCAGCTTTCCACCAAACGCACACCCTCNNAAACACACTGATCTTCAACCCATCGTGGGGCGGCTACAACAAGGCACAGAGGCCGGGACATCTAAAACCCATCTANGCCCGGGCCCACACNCCGCATCGCCCCTNCCCCAACNCGCACTNNNGANTCGCACTCACATNTGACCCGCGCTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5423#0 CCGGGGAGAACGGTACGTGGCAGTCGCTCCAAAACTCAAACCTCGGGCAGAAGGAGATGA 60 consensus_5423#2 ------------------------------------------------------------ consensus_5423#1 ------------------------------------------------------------ consensus_5423#3 ------------------------------------------------------------ consensus_5423#0 AGATTCGGAAGAAGAAGAAGAAGAAGAAAGCTGGAAGTTTGCCAATAAGCGGAAAAAACG 120 consensus_5423#2 ------------------------------------------------------------ consensus_5423#1 ------------------------------------------------------------ consensus_5423#3 ------------------------------------------------------------ consensus_5423#0 AGAGCAGCAATGGCAAGAACAGGATAATGATGAAGAACTGGACGT-TGGGCAGAACTATA 179 consensus_5423#2 -------------------------------------CCGCCCACGCGTCCGGAACTATA 23 consensus_5423#1 ------------------------------CCGGGCATTAAACCTTTCGCTGG--CAAAA 28 consensus_5423#3 ------------------------------------------------------------ consensus_5423#0 CGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAA 239 consensus_5423#2 CGACGCACAGCAAAGCAAGTAACCTTGGCGGGAAAGGAAAGTTTGCCAATGGGAAGCAAA 83 consensus_5423#1 AGGTGGTATTTGACGCAGAGGATGGTGATACAAACATGAAATCAGTTGACACCAACCGA- 87 consensus_5423#3 ------------------------------------------------------------ consensus_5423#0 TGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGG 299 consensus_5423#2 TGTATAATCAATCGTCTAAAATTAACGACGATCTTCATCCGTCTTGGGCTGCCAAACAGG 143 consensus_5423#1 TATCCCAACAA--ATCTGATAGTCAAAGCGATCTTCATCCCTCTTGGGCGGCCAAACAGG 145 consensus_5423#3 ---------------------------AGAATCCCCGAGGTTTATG------CAAACAGG 27 *** * * ** ******** consensus_5423#0 CTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATG-GT 358 consensus_5423#2 CTCAGCAAGGCATTAAACCTTTCGCTGGCAAAAAGGTGGTATTTGACGCAGAGGATG-GT 202 consensus_5423#1 CCCAGCAAGGAATTAAACCTTTCGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATG-GT 204 consensus_5423#3 CCCAGCAAGGCAATTAACCTTTTGCTGGCAAAAAGATTGTGTTTGACGGCGAAGATGTGT 87 * ******** * * ******* ************ * ** ******* ** **** ** consensus_5423#0 GATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGC 418 consensus_5423#2 GATACAAACATGAAACCAGTTGGCACCAACCGATATCCCAACAAATCTGATAGTCAAAGC 262 consensus_5423#1 GATACAAACATGAAACCCGTTGCCACCAAACGATATCCCAACAAATCTGATAGTCAAAGC 264 consensus_5423#3 GATACAAACATGAAACCAGTTCCCACCATGCGTTTTCCCAGTAAATCTGATAGACAAAGC 147 ***************** *** ***** ** * ***** *********** ****** consensus_5423#0 GATCTTCAT-CCGTCTTGGGCGGCCAAACAG-GCCCAGCAA--GGAATTAAACCTTTCGC 474 consensus_5423#2 GATCTTCAT-CCGTCTTGGGCGGCCAAACAG-GCCCAGCAA--GGAATTAAACCTTTCGC 318 consensus_5423#1 GATCTTCAT-CCGTCTTGGGCAGCCAAACAG-GCTCAACAA--GGAATTAAACCTTTCGC 320 consensus_5423#3 GATCTTCATACCGTCTTGGGCGGCCAAACAGTGCCCAGCAATAGTAATTAAACCTTTCGC 207 ********* *********** ********* ** ** *** * *************** consensus_5423#0 TGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCAC 534 consensus_5423#2 TGGTAAAAAGATTGTGTTTGACGCAGAGGATGGTGATACAAATATGAAACCAGTTGCCAC 378 consensus_5423#1 TGGCAAAAAGATTGTGTTTGACGGCGAAGATGGTGATACAAACATGAAATCCGTTGCCAC 380 consensus_5423#3 TGGCAAAAAGGTGGTGTTTGGCGCGGATGATAATGATAATGAACGGGCAGAATTTACTTC 267 *** ****** * ******* ** ** *** ***** * * * ** * * consensus_5423#0 CAACCGATTTCCAAG----TAAATCTGATAGACAAAGCGATCTTCATCCGTCT---TGGG 587 consensus_5423#2 CAACCGATTTCCAAG----TAAATCTGATAGACAAAGCGATCTTCATCCGTCT---TGGG 431 consensus_5423#1 CAAACGATATCCCAA----CAAATCTGATAGTCAAAGCGATCTTCATCCGTCT---TGGA 433 consensus_5423#3 CAACCAACCTAAAAAGCGACAATTTCAATAGCAAATCAGACCTTCATCCTTCGGCACGGA 327 *** * * * * ** * **** ** ** ******** ** ** consensus_5423#0 CGGC------------CAAACAGGCCC-AGCAAGGAATTAAACCTTTTGCTGGCAAAAA- 633 consensus_5423#2 CGGC------------CAAACAGGCCC-AGCAAGGAATTAAACCTTTTGCTGGCAAAAA- 477 consensus_5423#1 CAGC------------CAAACAGGCTC-AACAAGGAATTAAACCTTTTGCTGGCAAAAA- 479 consensus_5423#3 CGGCATGGTACGGCTANAAGCAAGCGCGAACATGGAACTAAAATCTTTGATGGGAATGGT 387 * ** ** ** ** * * ** **** **** **** *** ** consensus_5423#0 --GATTGTG--TTTTGAC--GGCGAAGATGGTGATAC----------------------- 664 consensus_5423#2 --GATTGTG--TTT-GAC--GGCGAAGATGGTGATACAAATATGAAACCCGTTGCCACTA 530 consensus_5423#1 --GATTGTT--TTT-GAC--GCAGAGGATGGTGATACAAACATGAAATCCGTTGCCACCA 532 consensus_5423#3 ACGAGTGCAGCTTTCCACCAAACGCACACCCTCNNAAACACACTGATCTTCAACCCATCG 447 ** ** *** ** * * * * consensus_5423#0 ------------------------------------------------------------ consensus_5423#2 ACCGATTTCC-CAGCAAATCTGAAAGACAAAGCGATCTTCATCCGTCTTGGGCGGCCAAA 589 consensus_5423#1 AACGATATCC-CAACAAATCTGATAGTCAAAGCGATCTTCATCCGTCTTGGGCGGCCAAA 591 consensus_5423#3 TGGGGCGGCTACAACAAGGCACAGAGGCCGGGACATCTAAAACCCATCTANGCCCGGGCC 507 consensus_5423#0 ------------------------------------------------------------ consensus_5423#2 CAGGCTCAGCAAGG-AATTAAACCTTTCGCTGGCAACAAAGTGGGTGT------------ 636 consensus_5423#1 CAGGCCCAGCAAGGGAATTAAACCTTTCGCTGGCAAAAAGGTGGTGTT------------ 639 consensus_5423#3 CACACNCCGCATCGCCCCTNCCCCAACNCGCACTNNNGANTCGCACTCACATNTGACCCG 567 consensus_5423#0 ------ consensus_5423#2 ------ consensus_5423#1 ------ consensus_5423#3 CGCTCG 573 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||