These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1042 fasta sequence [GACCCACGCGTCCGGCGTCGTCGTCGTCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAAATAATAATTATATTAGGTAATTATATTAATAATTATAATAATAATTATAATAATAATGATAGTAATGTGTAATTAAGATAGTACGAAACGGACAGGAGGTGTACACGGAAGCGCGGACAACTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTCATTAGTATGGCTGTACTTTTCGTCCTGAGTCATGGGAAAAAAGTACCAAGTGTAGATATCATTTTATCCGACAGAAAGCTGCTGTAAGAGAGAAGGTTGAACGGAACCAGGAATCAACCTGGGTGGTGTAGCGTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACACACACACACACACTCACATTTTTCCCAATAAAAGGAAGGCAACGGCTTATGGCTTACC-TTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCGGCGATGACGTGCCGCGATCATGATCAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGAGGATTGAATGTGTGTGATGTTCGGCGCGACTATGTAAATGTAAGCCAAAAACTACTACGGAAGGACGAAATGTGGTATAATAGAGGAAAAAGATTAAAAAACTATCATCGGAACCAGATTGTTGTTTCTCGTGTGTTTTCTCTGTCATTTGCCTAACACATTGTCGTCATTCGTATTCGTACACAAGTTCATGTAAATTTTCTCTCGAACTTTTCGTATTAAAAAAACCAACAGCTGCAACTGTTGTGTGTGTGCGCGTGTTAGAGAAATCGAGCGGGATGAAAGGCAAATAAATGGAAAAAAGTTAAT] [+] EMBL BM620168 [GACCCACGCGTCCGGCGTCGTCGTCGTCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAAATAATAATTATATTAGGTAATTATATTAATAATTATAATAATAATTATAATAATAATGATAGTAATGTGTAATTAAGATAGTACGAAACGGACAGGAGGTGTACACGGAAGCGCGGACAACTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTCATTAGTATGGCTGTACTTTTCGTCCTGAGTCATGGGAAAAAAGTACCAAGTGTAGATATCATTTTATCCGACAGAAAGCTGCTGTAAGAGAGAAGGTTGAACGGAACCAGGAATCAACCTGGGTGGTGTAGCGTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACACACACACACACACTCACATTTTTCCCAATAAAAGGAAGGCAACGGCTTATGGCTTACC TTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCGGCGATGACGTGCCGCGATCATGATCAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGATGG ] [+] EMBL BM625747 [ ccgGTAGCGTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACACACACACTCA CACA TTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTTTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACT CACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCGGCGATGACGTGCCGCGATCATG CAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGAGGATTGAATGTGTGTGATGTTCGGCGCGACTATGTAAATGTAAGCCAAAAACTACTACGGAAGGACGAAATGTGGTATAATAGAGGAAAAAGATTAAAAAACTATCATCGGAACCAGATTGTTGTTTCTCGTGTGTTTTCTCTGTCATTTGCCTAACACATTGTCGTCATTCGTATTCGTACACAAGTTCATGTAAATTTTCTCTCGAACTTTTCGTATTAAAAAAACCAACAGCTGCAACTGTTGTGTGTGTGCGCGTGTTAGAGAAATCGAGCGGGATGAAAGGCAAATAAATGGAAAAAAGTTAAT] consensusID : consensus_5424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 846 fasta sequence [ACGAAGAAAAAAAAACAAATATAAACAGCCAGAAAACAGTTGCGGCTGGGTGTCGTCGTCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAAATAATAATTATATTAATAATTATATTAATAATTATAATAATAATGATAATAATAATGATAATAATGTGTAATTAAGATAGTACGAAACGGACATGATGTGTACACGGAAGCGCGGACAACTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTTATTAGTATGGCTGTACTTTTCGTCCTAAGTCA-TGGGAAAAAAGTA-CCA-AGTGTA-GATATCATTTTATCCGACAGAAAGCTGCTGTAAGAAAGAAGGTTGAACGGAACCAGGAATCAACCTGTGGTCTACTGGGTGGTGTAGCGTTTTGTTACGTTTACA-GTAAA-TGAAGACAGAAAACGACAGAGGAGCGGGAAAGC-AC-AC-ACACACACTCACACATTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTTTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCCGGCGATGACGTGCCGCGATCATGCAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGCATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGAGGAATTGAATGTGTGTGATGTTCGGCGCGACTATGTAACATGTAAGCCAAAAACTACTACGGAAGGACGAAATGTGGT] [+] EMBL BM587224 [ACGAAGAAAAAAAAACAAATATAAACAGCCAGAAAACAGTTGCGGCTGGGTGTCGTCGTCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAAATAATAATTATATTAATAATTATATTAATAATTATAATAATAATGATAATAATAATGATAATAATGTGTAATTAAGATAGTACGAAACGGACATGATGTGTACACGGAAGCGCGGACAACTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTTATTAGTATGGCTGTACTTTTCGTCCTAAGTCA TGGGAAAAAAGTA CCA AGTGTA GATATCATTTTATCCGACAGAAAGCTGCTGTAAGAAAGAAGGTTGAACGGAACCAGGAATCAACCTGTGGTCTACTGGGTGGTGTAGCGTTTTGTTACGTTTACA GTAAA TGAAGACAGAAAACGACAGAGGAGCGGGAAAGC AC AC ACACACACTCACACATTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTTTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACCATCTGCGTTTGATTTGATCGTGTCGCCCGGCG ] [+] EMBL AL933540 [ ccnaggttAAACGGACATTATGTGTACACCNAAGCGC GACAACTAAGCCAAAAGGAGAACACAGGTGCACCACACGGTTTATTAGTATGGCTGTACTTTTCGTCCTAAGTCACTGGGAAAAAAGTACCCANAGTGTATGATATCATTTTATCCGACAGAAAGCTGCTGTAAGAAAGAAGGTTGAACGGAACCNGGAATCAACCTGTGGTCTACTGGGTGGTGTAGCGTTTTGTTACGTTTACACGTAAACTGAAGACNGAAAACGACAGAGGAGCGGGAAAGCAACAACAACACACACTCACACATTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTTTTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTTACACACACACACCATCTGCGTTTGATTTGATCGTGTCG CCGGCGATGACGTGCCGCGATCATGCAGTGTAATATATTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTTGTGTGCATGGAGATGCATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGAGGAATTGAATGTGTGTGATGTTCGGCGCGACTATGTAACATGTAAGCCAAAAACTACTACGGAAGGACGAAATGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5424#0 ----------------------------------GACCCACGCGTCCGGCGTCGTCGTCG 26 consensus_5424#1 ACGAAGAAAAAAAAACAAATATAAACAGCCAGAAAACAGTTGCGGCTGGG--TGTCGTCG 58 ** *** * ** ******* consensus_5424#0 TCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAA 86 consensus_5424#1 TCGTCGTCCCTGTGTGGACGGTCGTCCAAAATAATACTAATAATAATAATAATAATTAAA 118 ************************************************************ consensus_5424#0 ATAATAATTATATTAGGTAATTATATTAATAATTATAATAATAATTATAATAATAATGAT 146 consensus_5424#1 ATAATAATTATATTAA-TAATTATATTAATAATTATAATAATAATGATAATAATAATGAT 177 *************** **************************** ************** consensus_5424#0 AGTAATGTGTAATTAAGATAGTACGAAACGGACAGGAGGTGTACACGGAAGCGCGGACAA 206 consensus_5424#1 AATAATGTGTAATTAAGATAGTACGAAACGGACATGATGTGTACACGGAAGCGCGGACAA 237 * ******************************** ** ********************** consensus_5424#0 CTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTCATTAGTATGGCTGTACTTTTCG 266 consensus_5424#1 CTAAGCAAAAAGGAGAACACAGGTGCACCACACGGTTTATTAGTATGGCTGTACTTTTCG 297 ************************************* ********************** consensus_5424#0 TCCTGAGTCATGGGAAAAAAGTACCAAGTGTAGATATCATTTTATCCGACAGAAAGCTGC 326 consensus_5424#1 TCCTAAGTCATGGGAAAAAAGTACCAAGTGTAGATATCATTTTATCCGACAGAAAGCTGC 357 **** ******************************************************* consensus_5424#0 TGTAAGAGAGAAGGTTGAACGGAACCAGGAATCAACCTG----------GGTGGTGTAGC 376 consensus_5424#1 TGTAAGAAAGAAGGTTGAACGGAACCAGGAATCAACCTGTGGTCTACTGGGTGGTGTAGC 417 ******* ******************************* *********** consensus_5424#0 GTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACA 436 consensus_5424#1 GTTTTGTTACGTTTACAGTAAATGAAGACAGAAAACGACAGAGGAGCGGGAAAGCACACA 477 ************************************************************ consensus_5424#0 CACACACACACACTCACATTTTTCCCAATAAAAGGAAGGCAACGGCTTATGGCTTACCTT 496 consensus_5424#1 CACACACTCACACA-----TTTTCCCAATAAAAGGAAGGCAACGGCTTATGACTTACCTT 532 ******* ***** ******************************** ******** consensus_5424#0 T-GCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACACACCATCTG 555 consensus_5424#1 TTGCCTCTCTCCGTACACAGGATCTGGCACTGATCCACTCACACACACACAC--CATCTG 590 * ************************************************** ****** consensus_5424#0 CGTTTGATTTGATCGTGTCGCC-GGCGATGACGTGCCGCGATCATGATCAGTGTAATATA 614 consensus_5424#1 CGTTTGATTTGATCGTGTCGCCCGGCGATGACGTGCCGCGATCATG--CAGTGTAATATA 648 ********************** *********************** ************ consensus_5424#0 TTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTT 674 consensus_5424#1 TTTATGTAAAGTAATGTTAATGTACTCGCTATTTTCCTCGTCCGGTCGTCGTTGTCGTTT 708 ************************************************************ consensus_5424#0 GTGTGCATGGAGATG-ATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGA 733 consensus_5424#1 GTGTGCATGGAGATGCATGGTGGAACTGATGCATTCTGGTTCTCCCGGATGCTGGGGAGA 768 *************** ******************************************** consensus_5424#0 GGA-TTGAATGTGTGTGATGTTCGGCGCGACTATGTAA-ATGTAAGCCAAAAACTACTAC 791 consensus_5424#1 GGAATTGAATGTGTGTGATGTTCGGCGCGACTATGTAACATGTAAGCCAAAAACTACTAC 828 *** ********************************** ********************* consensus_5424#0 GGAAGGACGAAATGTGGTATAATAGAGGAAAAAGATTAAAAAACTATCATCGGAACCAGA 851 consensus_5424#1 GGAAGGACGAAATGTGGT------------------------------------------ 846 ****************** consensus_5424#0 TTGTTGTTTCTCGTGTGTTTTCTCTGTCATTTGCCTAACACATTGTCGTCATTCGTATTC 911 consensus_5424#1 ------------------------------------------------------------ consensus_5424#0 GTACACAAGTTCATGTAAATTTTCTCTCGAACTTTTCGTATTAAAAAAACCAACAGCTGC 971 consensus_5424#1 ------------------------------------------------------------ consensus_5424#0 AACTGTTGTGTGTGTGCGCGTGTTAGAGAAATCGAGCGGGATGAAAGGCAAATAAATGGA 1031 consensus_5424#1 ------------------------------------------------------------ consensus_5424#0 AAAAAGTTAAT 1042 consensus_5424#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||