These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 678 fasta sequence [CCCCGAGGTAGTTACGTGGAAAACTACAATTAGAAAGCCGTCGCGTTCAATTTAAGTTCCAAGCTTTTCTACCTTTATTATTGTGCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCCAGAATCAGTCCTTCTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGAGCTGCCGGCCGGGGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTGGTGAACCATTTCGCGTCGCGCCTCCCGCTCGACTGGTTCGGTACCCGTGCCGGGCCGTACNGGTTCGAGCTGGAGCTG] [+] EMBL AL933573 [CCCCGAGGTAGTTACGTGGAAAACTACAATTAGAAAGCCGTCGCGTTCAATTTAAGTTCCAAGCTTTTCTACCTTTATTATTGTGCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCCAGAATCAGTCCTTCTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGA ] [+] EMBL BX628284 [ AATTTAAGTTCCAAGCTTTTCTACCTTTATTATTGTGCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCCAGAATCAGTCCTTCTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGAGCTGCCGGCCGGGGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTGGTGAACCATTTCGCGTCGCGCCTCCCGCTCGACTGGTTCGGTACCCGTGCCGGGCCGTACNGGTTCGAGCTGGAGCTG] [+] EMBL BX615133 [ CTTTATCGTCCTTCGTGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGAGCTGCCGGCCGGGGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTGGTGAACCATTTCGCGTCGCGCCTCCCGCTCGACTGGTTCGGT ] consensusID : consensus_5426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [AGCTGCCTACCGCAAAAGCCGAAGCTGGCTGTGTGTTTTCAGTGTTTACGTTGGAAAACTACAAATTAGAAAGCCATCGCGTTCAATTTAAGTTCCAAGCTTTTCCACCTTTATTATCGTTTGCCACAACGCGTTAGAATAGCTGTGTGCGTGGCGCCAGAATCAATCCTTCGTTATCGTCCTTCGTCCGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAGAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGACCGATCCCCTCTGGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACCGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGA] [+] EMBL CNS08UVT [AGCTGCCTACCGCAAAAGCCGAAGCTGGCTGTGTGTTTTCAGTGTTTACGTTGGAAAACTACAAATTAGAAAGCCATCGCGTTCAATTTAAGTTCCAAGCTTTTCCACCTTTATTATCGTTTGCCACAACGCGTTAGAATAGCTGTGTGCGTGGCGCCAGAATCAATCCTTCGTTATCGTCCTTCGTCCGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATAGCCGGCGATGGATAGCGATGCGAGTGAGAATAATTCGGTCCCGCTGGACAAAACTAACGATGAGCTGCAGCGGACCGATCCCCTCTGGAGACAGTAGCGGAGGAAGCAGAAGGATATCAGCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAGCAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTGCGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGATCGCCCTCGAGACCGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5426#0 ----------------------------------CCCCGAGGTAGTTACGT-GGAAAACT 25 consensus_5426#1 AGCTGCCTACCGCAAAAGCCGAAGCTGGCTGTGTGTTTTCAGTGTTTACGTTGGAAAACT 60 ** ****** ******** consensus_5426#0 ACAA-TTAGAAAGCCGTCGCGTTCAATTTAAGTTCCAAGCTTTTCTACCTTTATTATTGT 84 consensus_5426#1 ACAAATTAGAAAGCCATCGCGTTCAATTTAAGTTCCAAGCTTTTCCACCTTTATTATCGT 120 **** ********** ***************************** *********** ** consensus_5426#0 --GCCACAACGCGATAGAATTGCTGTGTGCGTGGCGCCAGAATCAGTCCTTCTTTATCGT 142 consensus_5426#1 TTGCCACAACGCGTTAGAATAGCTGTGTGCGTGGCGCCAGAATCAATCCTTCGTTATCGT 180 *********** ****** ************************ ****** ******* consensus_5426#0 CCTTCGT--GGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATA 200 consensus_5426#1 CCTTCGTCCGGAATAGCAAAGTGCTCTCCGGCACAGCTGCGCTGGAATAGCTGACTCATA 240 ******* *************************************************** consensus_5426#0 GCCGGCGATGGATAGCGATGCGAGTGAAAATAATTCGGTCCCGCTGGACAAAACTAACGA 260 consensus_5426#1 GCCGGCGATGGATAGCGATGCGAGTGAGAATAATTCGGTCCCGCTGGACAAAACTAACGA 300 *************************** ******************************** consensus_5426#0 TGAGCTGCAGCGGAGCCGATCCCCTCTAGAGACAGTAGCGGAGGAAGCAGAAGGATATCA 320 consensus_5426#1 TGAGCTGCAGCGGA-CCGATCCCCTCTGGAGACAGTAGCGGAGGAAGCAGAAGGATATCA 359 ************** ************ ******************************** consensus_5426#0 GCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAG 380 consensus_5426#1 GCCCATTCTGGTCACACCGGCGACGGAATGGAAGTCGCTACCGCTTCTGGTGGAGGACAG 419 ************************************************************ consensus_5426#0 CAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTG 440 consensus_5426#1 CAGCCGGGTGCTGCTGGCACCGTCGCTCCAGCTTGCCTTGCGCCATTTTTTCACCCACTG 479 ************************************************************ consensus_5426#0 CGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGAT 500 consensus_5426#1 CGGCAGGGACGTCATCGAGATAAGCCGGTCCGATCTGATGATAGTGCTTATCTATGTGAT 539 ************************************************************ consensus_5426#0 CGCCCTCGAGAC-GGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGAGCTGCCGGCCGG 559 consensus_5426#1 CGCCCTCGAGACCGGGCCTGATACCGAAGGGTGGCTCACTGCCGCCGA------------ 587 ************ *********************************** consensus_5426#0 GGAAGCATCACACCACCTACCGCTCGTTCGATAGGCGGTTGGTGAACCATTTCGCGTCGC 619 consensus_5426#1 ------------------------------------------------------------ consensus_5426#0 GCCTCCCGCTCGACTGGTTCGGTACCCGTGCCGGGCCGTACNGGTTCGAGCTGGAGCTG 678 consensus_5426#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||