These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 703 fasta sequence [CCGCCCCGGTGCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGAAATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCATACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAGGAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCGATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACGATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAGACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAAGCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCAAGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAA-GGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTC] [+] EMBL BM636528 [CCGCCCCGGTGCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACAACGAAAATTTGCTATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCATACCGGACGGGGCCGGTAAGCAAAACACTGCCGGAACGAACGATTCGCATCCAGCGAA AGGAGCACCGTCTACGGTGGAAGGTGACTCGGACCGTGACCACCGGGAGCGTGATTCCGATGCTTCTAGCGACCGCGATTCG ] [+] EMBL BM616419 [ CCGGGTCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGAAATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCATACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAGGAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCGATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACGATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAGACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAAGCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCAAGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAA GGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTC] [+] EMBL BM589500 [ ccgCAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGAAATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCATACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAGGAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCGATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACGATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAGACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAAGCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCAAGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGAC ] consensusID : consensus_5427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [ATCGCCCCGAGGTTTAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGCGTCAAGCGGCTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTCCTGGCTGCCGCCGACCCATCCGGATGCGAAGCTGTCGAAAAGTGCGAAAGTGCTGCGGCGCGAGCTGATGGAAGAGCAGAAGCAGAAGGAGGCGGCGAGCGAAGCCGTCCCGCCAACGGTTGTGGTGGAAAGCTATCCACCGGCG] [+] EMBL AL933682 [ATCGCCCCGAGGTTTAACGGTACGGCTACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACTGCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGCGTCAAGCGGCTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCTGCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTCCTGGCTGCCGCCGACCCATCCGGATGCGAAGCTGTCGAAAAGTGCGAAAGTGCTGCGGCGCGAGCTGATGGAAGAGCAGAAGCAGAAGGAGGCGGCGAGCGAAGCCGTCCCGCCAACGGTTGTGGTGGAAAGCTATCCACCGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5427#0 CCGCCCCGGTGCCGTACAGGAAGCACACGAGAGAACGTACTTTACCGATAAAACACCGGA 60 consensus_5427#1 ------------------------------------------------------------ consensus_5427#0 AATTTGCCATCATGACGCTACCCGAGGCGCTTCTGAAGCGTCTTGCCAAGCGTGGCATCA 120 consensus_5427#1 ------------------------------------------------------------ consensus_5427#0 TACCGGACGGGGCCGGTAAGCAAAACACAGCCGGAACGAACGATTCGCATCCAACGAAAG 180 consensus_5427#1 ------------------------------------------------------------ consensus_5427#0 GAGGAGCACCGTCTACGGCGGAAGGTGACTCGGACCGGGACCACCGGGAGCGTGATTCCG 240 consensus_5427#1 ------------------------------------------------------------ consensus_5427#0 ATGCCTCTAGCGACCGCGATTCGGACGACCACGGCGAAAACGACGATGACGAGGAGGACG 300 consensus_5427#1 ------------------------------------------------------------ consensus_5427#0 ATGAGCTAGACGAGGAGCGCCGTGAGGCGGACGCGGTGAACGAGGAAATCATCGCGGAAG 360 consensus_5427#1 ------------------------------------------------------------ consensus_5427#0 ACTACGACGAGTACGATCAGGTGAATCCGGACTCGTTCGAGTATGCGGCGAAAAAGAAAA 420 consensus_5427#1 ------------------------------------------------------------ consensus_5427#0 GCAACCCAGCGCAGGACTGGACGGAAAAGATGAAGCAAAAGATGACCAAACGGTACGGCT 480 consensus_5427#1 ---------------------------------ATCGCCCCGAGGTTTAACGGTACGGCT 27 * * * ************ consensus_5427#0 ACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACT 540 consensus_5427#1 ACCAGTCGGTGGAGGCGTGCCAGAACAAGTACAACGTGTACCATCTCTGCACGATGTACT 87 ************************************************************ consensus_5427#0 GCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGTGTCA 600 consensus_5427#1 GCGTCAAGCGGTACGGGGAGGCGGACTTCGAGATCGAGAAGGACTACGACAAGCGCGTCA 147 ******************************************************* **** consensus_5427#0 AGCGGTTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCT 660 consensus_5427#1 AGCGGCTGCTCGAGCGCTACCCGCTGCCGAAGAACTGGCGCAAGGAGTACGACGTCGGCT 207 ***** ****************************************************** consensus_5427#0 GCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTC----------------- 703 consensus_5427#1 GCAAAGCGTTCTACTTCTACAACAAGGACACGCGCATTGTCTCCTGGCTGCCGCCGACCC 267 ******************************************* consensus_5427#0 ------------------------------------------------------------ consensus_5427#1 ATCCGGATGCGAAGCTGTCGAAAAGTGCGAAAGTGCTGCGGCGCGAGCTGATGGAAGAGC 327 consensus_5427#0 ------------------------------------------------------------ consensus_5427#1 AGAAGCAGAAGGAGGCGGCGAGCGAAGCCGTCCCGCCAACGGTTGTGGTGGAAAGCTATC 387 consensus_5427#0 -------- consensus_5427#1 CACCGGCG 395 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||