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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 957 fasta sequence
[CCGCGCCAATTCTAACCCAGTGTCTCCGTACAGTATTCACCGTCAGCTTTTCTCAAAACAAAAATCTCAAATCGCGTGTAGAGCCTGTGTACCACTTCTTAGACGAAGTTGTCTTGCGAAGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGCGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGCCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACTACATGAAATCGCTGCAAGATCAGTTCGGTGCGCAAGATTGGCAGGCGATGCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCTCGACTACAAACCGGCCCATACGGGCGTGTGCTGCCTTGCGCTGGCATTTCAAGTGTATGGAGTGNCGGTCCCACTTATGGACGAAATGGATGAGACCACGCGCTGGTACNATATATTCTGCCCGGAACTGACGCGCGAACAGCATTGGGAGATAATG]
[+] EMBL BM605714 [CCGCGCCAATTCTAACCCAGTGTCTCCGTACAGTATTCACCGTCAGCTTTTCTCAAAACAAAAATCTCAAATCGCGTGTAGAGCCTGTGTACCACTTCTTAGACGAAGTTGTCTTGCGAAGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGCGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGCCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACT ]
[+] EMBL BX620924 [ ATAGTCAAGCCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACTACATGAAATCGCTGCAAGATCAGTTCGGTGCGCAAGATTGGCAGGCGATGCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCTCGACTACAAACCGGCCCATACGGGCGTGTGCTGCCTTGCGCTGGCATTTCAAGTGTATGGAGTGNCGGTCCCACTTATGGACGAAATGGATGAGACCACGCGCTGGTACNATATATTCTGCCCGGAACTGACGCGCGAACAGCATTGGGAGATAATG]
consensusID : consensus_5429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence
[ATTGAGGCGAGAGGTCACCAATTCTAACCCAGTGTCTCCGTACAGTATTCACAGTCATCTTTTCTCAAAACAANAAATCTCAAATCGCGTGTACAGCCTGTGTACCACTTCATAGACGAAGTTGTTTTGCGAAGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGCGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGTCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATGTGAGTATCAGCAATGCATGAAATGGATTAGTTTTGTTTGTTTTTTGCTTTAGAATACTCAAGCAGTTTCAAGTGGCTGACTGTTGCAAAGGCTTAACGGGGAGANGGCCTTAAAGTGCAGCCCGCTTTACTTCGCA]
[+] EMBL BX620462 [ATTGAGGCGAGAGGTCACCAATTCTAACCCAGTGTCTCCGTACAGTATTCACAGTCATCTTTTCTCAAAACAANAAATCTCAAATCGCGTGTACAGCCTGTGTACCACTTCATAGACGAAGTTGTTTTGCGAAGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGCGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGTCTAGTGATGATGCAAATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATGTGAGTATCAGCAATGCATGAAATGGATTAGTTTTGTTTGTTTTTTGCTTTAGAATACTCAAGCAGTTTCAAGTGGCTGACTGTTGCAAAGGCTTAACGGGGAGANGGCCTTAAAGTGCAGCCCGCTTTACTTCGCA]
consensusID : consensus_5429#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence
[ATCCCCGAGGTTACAGCATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACTACATGAAATCGCTGCAAGATCAGTTCGGTGCGCAAGATTGGCAGGCGATGCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCTCGACTACAAACCGGCCCATACGG]
[+] EMBL AL933764 [ATCCCCGAGGTTACAGCATTTTGTACCATCGATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGATCGCATGCTCCTGCCTGTATCTGGCCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAACGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGTGCGACGAGTACTGGTCGATGTGGGATACGATAGTGCAAGCCGAGCTGTTCATTGCGCGCGTGCTCAAGTTCGACATGACGATAGTGCACCCGCACAAGTACATGCTGCACTACATGAAATCGCTGCAAGATCAGTTCGGTGCGCAAGATTGGCAGGCGATGCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCTCGACTACAAACCGGCCCATACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5429#0 CCGCGCCAATTCTAACCCAGTGTCTCCGTACAGTATTCACCGTCAGCTTTTCTCAAAACA 60
consensus_5429#2 ------------------------------------------------------------
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 AAAATCTCAAATCGCGTGTAGAGCCTGTGTACCACTTCTTAGACGAAGTTGTCTTGCGAA 120
consensus_5429#2 ------------------------------------------------------------
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 GCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAGC 180
consensus_5429#2 ------------------------------------------------------------
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 GAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGCCTAGTGATGATGCAA 240
consensus_5429#2 ------------------------------------------------------------
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 ATGAACAACATCAATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAATA 300
consensus_5429#2 ------------------------------------------------------------
consensus_5429#1 ------------------------------------------------ATTGAGGCGAGA 12
consensus_5429#0 CTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAATGT 360
consensus_5429#2 ------------------------------------------------------------
consensus_5429#1 GGTCACCAATTCTAACCCAGTGTCTCCGTACAGTATTCACAGTCATCTTTTCTCAAAACA 72
consensus_5429#0 GCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAG-CAATTTTGTACCATCG 419
consensus_5429#2 ---------------------------ATCCCCGAGGTTACAG-CA-TTTTGTACCATCG 31
consensus_5429#1 ANAAATCTCAAATCGCGTGTACAGCCTGTGTACCACTTCATAGACGAAGTTGTTTTGCGA 132
** * ****
consensus_5429#0 ATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGA---TCGCATGCTCCTG 476
consensus_5429#2 ATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATATGA---TCGCATGCTCCTG 88
consensus_5429#1 AGCATACCCAGTCTTGCAGCATCTCCGGTTTGCCTTGAATTAGAAAGTTGAACTCTGCAG 192
* * ** ** *** * * * * * ** ** * * * ** * *
consensus_5429#0 CCTGTATCTGG---CCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAA 533
consensus_5429#2 CCTGTATCTGG---CCGGTAAAATCAAAGACGACAAAGTAAGGAAACGGGATGTTATTAA 145
consensus_5429#1 CGAGAGTCCGCAGTTCGTCCAAGTCAGTCAAGCCTAATAGTCAAGTCTAGTGATGATGCA 252
* * ** * ** ** *** * * * ** * * * * ** *
consensus_5429#0 CGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGT-----GCGACGAG 588
consensus_5429#2 CGTGGCCCACAACACGATCCACCGTGGTGCCCCGCCGCTAGAACCGT-----GCGACGAG 200
consensus_5429#1 AATGAACAACATCA-ATCTCACCGAGGTTGGAAGAAGAGAGAATGACTTTCAGCACCCAA 311
** * *** ** ***** *** * * **** ** * *
consensus_5429#0 TACTGGTCGATGTGGGAT-----ACGATAGTGCAAG---CCGAGCTGTTCAT-TGCGCGC 639
consensus_5429#2 TACTGGTCGATGTGGGAT-----ACGATAGTGCAAG---CCGAGCTGTTCAT-TGCGCGC 251
consensus_5429#1 TACTGGTCAACTATAGATCTCAAACGCTGAAGGAAATGCCCGCAAGGTTCATATTTGAAT 371
******** * *** *** * * ** *** ****** * *
consensus_5429#0 GTGCTCAA--GTTCGACATGA-------CGATAGTGCACCCGCA-CAAGTACATGCTGCA 689
consensus_5429#2 GTGCTCAA--GTTCGACATGA-------CGATAGTGCACCCGCA-CAAGTACATGCTGCA 301
consensus_5429#1 GTGCTCAAAAGTTGGAAATGAAACCGCTCACTTCTGCCACGGCAGCAATTTTGTACCATC 431
******** *** ** **** * * *** * *** *** * * *
consensus_5429#0 ----CTACATGAAAT----CGCTGCAAGATCAGTTCGGTGCGCAAG-ATTGGCAGGCGAT 740
consensus_5429#2 ----CTACATGAAAT----CGCTGCAAGATCAGTTCGGTGCGCAAG-ATTGGCAGGCGAT 352
consensus_5429#1 GATTCTTCCGAGAGTTGGACGACACGGAATACGATCCGTATGTGAGTATCAGCAATGCAT 491
** * * * ** * ** * ** ** * ** ** *** **
consensus_5429#0 GCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCT 800
consensus_5429#2 GCCCGTTGCTAGGGCTGCCGCTTCCTTTCTGCAGGATTTTCACCACAGTCCCAAAATTCT 412
consensus_5429#1 GAAATGGATTAGTTTTGTTTGTTTTTTGCTTTAGAATACTCAA-GCAGTTTCAAG-TGGC 549
* *** ** ** ** ** ** ** *** **** *** *
consensus_5429#0 CGACTACAAACCGGCCCATACGGGCGTGTGCTGCCTTGCGCTGGCATTTCAAGTGTATGG 860
consensus_5429#2 CGACTACAAACCGGCCCATACGG------------------------------------- 435
consensus_5429#1 TGACTGTTGCAAAGGCTTAACGGGGAGANGGCCTTAAAGTGCAGCCCGCTTTACTTCGCA 609
**** * * ****
consensus_5429#0 AGTGNCGGTCCCACTTATGGACGAAATGGATGAGACCACGCGCTGGTACNATATATTCTG 920
consensus_5429#2 ------------------------------------------------------------
consensus_5429#1 ------------------------------------------------------------
consensus_5429#0 CCCGGAACTGACGCGCGAACAGCATTGGGAGATAATG 957
consensus_5429#2 -------------------------------------
consensus_5429#1 -------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||