These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1480 fasta sequence [CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCATACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCCGAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAAATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGAACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAACTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCCGACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGA-GGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGGCTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGCTGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTTTGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCAAGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC] [+] EMBL AL933784 [CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCATACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCCGAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAAATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGAACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAACTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATAC ] [+] EMBL CNS08Q0K [ CGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCCGACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGA GGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGGCTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAA ] [-] EMBL CNS08Q0L [ ACGATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGAGGGTAG TTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGATTTTCAGGCGAGGG GCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGAACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGG TGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGCTGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTTTGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCAAGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC] consensusID : consensus_5430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [TACGCAGTATGGCAGGGTATCATACAATGTTCATTATTATTTCATTAAACTTTGTACTGAGAGTGAGTGCCTTACCCGAGAAAATGTTTTATAAAGACAAAGGTTTCGTTAACTCAGTTAACTCAAATTTCGTTAACTCAGTTAATTTTGTGGACAATTACACCCAAACGAAAAGTTTAGTGCATTTTGTGTCGGCTTATGTGCAAACAAGTTTACCGGAATTAAAACATGATCCTGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCCGACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGAACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCA] [+] EMBL BX624189 [TACGCAGTATGGCAGGGTATCATACAATGTTCATTATTATTTCATTAAACTTTGTACTGAGAGTGAGTGCCTTACCCGAGAAAATGTTTTATAAAGACAAAGGTTTCGTTAACTCAGTTAACTCAAATTTCGTTAACTCAGTTAATTTTGTGGACAATTACACCCAAACGAAAAGTTTAGTGCATTTTGTGTCGGCTTATGTGCAAACAAGTTTACCGGAATTAAAACATGATCCTGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCCGACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGAACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5430#0 CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCA 60 consensus_5430#1 ------------------------------------TACGCAGTATGGCAGGGT--ATCA 22 ***************** **** consensus_5430#0 TACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCC 120 consensus_5430#1 TACAATGTTCATTATTATTTCATT-AAACTT-TGTACTGA-GAGTGAGTGCCTTACC--C 77 ************************ ****** ******** **************** * consensus_5430#0 GAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAA 180 consensus_5430#1 GAGAAAATGTTTTATAAA-GACAAAGG-TTTCGTTAACTCAG---TTAA------CTCAA 126 ******** ********* ******** ************ *** ***** consensus_5430#0 ATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGA 240 consensus_5430#1 ATTTCG---TTAACTCA----GTTAATTTT--GTGG-ACA-ATTACACCC---AAACGAA 172 ****** * ****** ** *** ** **** *** ****** ** ***** * consensus_5430#0 ACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAA 300 consensus_5430#1 AAG----TTTA---GTGCATTTT--GTGTCGGCTTA-TGTGCAAACAAGTT-TACCGGAA 221 * * ** * ****** *********** ************** ******** consensus_5430#0 CTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGT 360 consensus_5430#1 TTAAAACA---TGATCCTG-CTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGT 277 * **** ******** **************************************** consensus_5430#0 TCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAG 420 consensus_5430#1 TCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAG 337 ************************************************************ consensus_5430#0 GAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATA 480 consensus_5430#1 GAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATA 397 ************************************************************ consensus_5430#0 TCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGA 540 consensus_5430#1 TCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGA 457 ************************************** ********************* consensus_5430#0 TGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCC 600 consensus_5430#1 TGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCC 517 ******************************************************* **** consensus_5430#0 GACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGA 660 consensus_5430#1 GACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGA 577 ******* ************************* ******************* ****** consensus_5430#0 TCCTGAGGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAG 720 consensus_5430#1 ACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAG 637 ******** ******* ******************* ********************** consensus_5430#0 AATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAA 780 consensus_5430#1 AATGATGTCCCAGATGATGTCA-------------------------------------- 659 ********************** consensus_5430#0 AACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATA 840 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 ATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAA 900 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 AAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTC 960 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 GCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACA 1020 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 ATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTC 1080 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 GCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGC 1140 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 GCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGG 1200 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 CTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTG 1260 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 TGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGC 1320 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 TGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTT 1380 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 TGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCA 1440 consensus_5430#1 ------------------------------------------------------------ consensus_5430#0 AGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC 1480 consensus_5430#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||