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Anopheles gambiae
cluster # 5430 cluster # 5430       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5430#0 length = 1480 sequences # 3  
consensus_5430#1 length = 659 sequences # 1  

consensusID : consensus_5430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1480
fasta sequence
                              [CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCATACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCCGAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAAATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGAACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAACTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCCGACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGA-GGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGGCTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGCTGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTTTGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCAAGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC]

[+] EMBL AL933784             [CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCATACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCCGAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAAATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGAACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAACTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CNS08Q0K             [                                                                                                                                                                                                                                                                                                                                                                     CGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCCGACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGA GGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGGCTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAA                                                                                                                                                                                                                ]
[-] EMBL CNS08Q0L             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACGATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGATCCTGAGGGTAG TTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAAAACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATAATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAAAAGTGTGCGATTTTCAGGCGAGGG  GCATGTAGAAGCATGGGGAGACGGTTGGAAATTCGCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGAACTCACACAATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTCGCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGCGCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGG TGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTGTGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGCTGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTTTGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCAAGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC]


>consensus_5430#0 CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCA TACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCC GAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAA ATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGA ACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAA CTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGT TCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAG GAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATA TCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGA TGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCC GACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGA TCCTGAGGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAG AATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAA AACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATA ATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAA AAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTC GCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACA ATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTC GCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGC GCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGG CTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTG TGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGC TGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTT TGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCA AGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC



consensusID : consensus_5430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence
                              [TACGCAGTATGGCAGGGTATCATACAATGTTCATTATTATTTCATTAAACTTTGTACTGAGAGTGAGTGCCTTACCCGAGAAAATGTTTTATAAAGACAAAGGTTTCGTTAACTCAGTTAACTCAAATTTCGTTAACTCAGTTAATTTTGTGGACAATTACACCCAAACGAAAAGTTTAGTGCATTTTGTGTCGGCTTATGTGCAAACAAGTTTACCGGAATTAAAACATGATCCTGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCCGACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGAACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCA]

[+] EMBL BX624189             [TACGCAGTATGGCAGGGTATCATACAATGTTCATTATTATTTCATTAAACTTTGTACTGAGAGTGAGTGCCTTACCCGAGAAAATGTTTTATAAAGACAAAGGTTTCGTTAACTCAGTTAACTCAAATTTCGTTAACTCAGTTAATTTTGTGGACAATTACACCCAAACGAAAAGTTTAGTGCATTTTGTGTCGGCTTATGTGCAAACAAGTTTACCGGAATTAAAACATGATCCTGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCCGACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGAACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCA]


>consensus_5430#1 TACGCAGTATGGCAGGGTATCATACAATGTTCATTATTATTTCATTAAACTTTGTACTGA GAGTGAGTGCCTTACCCGAGAAAATGTTTTATAAAGACAAAGGTTTCGTTAACTCAGTTA ACTCAAATTTCGTTAACTCAGTTAATTTTGTGGACAATTACACCCAAACGAAAAGTTTAG TGCATTTTGTGTCGGCTTATGTGCAAACAAGTTTACCGGAATTAAAACATGATCCTGCTA GTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGTTCAACAAACCACGAGGGTGACTT CATCTGAGTTTGTGGATACTTCCATAACATCGCAAAGGAATGATTCTGAAGTCACGACGC CACAAGTGAAAGAAAAAACAGAAAGTACATCATTATATCTGACAGACAAACCACCATATA AAACAATAGATTCTCTAGAATACTCTAGAGAAACGGATGATCCTGGAGTGTCATCTCTAC AAGCTACAAAAGGACCAATAAATATATCATTGCATCCGACAGATGAACCATCGTATACGA AAACCAATCACCAGGAGTACACTACAGAATTGGATGAACCTGAGGTGGCTTCGCTACATC GCATAAACCAATCGGTCATTCTAAATACACTAGAGAGAATGATGTCCCAGATGATGTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5430#0      CGAGGCTAATGTAAAGTACAACGAGAAGAAACAAGCTACGCAGTATGGCAGGGGTAATCA 60
consensus_5430#1      ------------------------------------TACGCAGTATGGCAGGGT--ATCA 22
                                                          *****************   ****

consensus_5430#0      TACAATGTTCATTATTATTTCATTTAAACTTCTGTACTGACGAGTGAGTGCCTTACCGCC 120
consensus_5430#1      TACAATGTTCATTATTATTTCATT-AAACTT-TGTACTGA-GAGTGAGTGCCTTACC--C 77
                      ************************ ****** ******** ****************  *

consensus_5430#0      GAGAAAATTTTTTATAAAAGACAAAGGGTTTCGTTAACTCCAGGTCTAAAAACCCCTCAA 180
consensus_5430#1      GAGAAAATGTTTTATAAA-GACAAAGG-TTTCGTTAACTCAG---TTAA------CTCAA 126
                      ******** ********* ******** ************      ***      *****

consensus_5430#0      ATTTCGGTCTAAACTCAGGCTGTAAATNTTTGGTGGGACACATTACAACCGCAAAACGGA 240
consensus_5430#1      ATTTCG---TTAACTCA----GTTAATTTT--GTGG-ACA-ATTACACCC---AAACGAA 172
                      ******   * ******    ** *** **  **** *** ****** **   ***** *

consensus_5430#0      ACAAGGTTCTAGGTGCACATTTTAGGTGTCGGCTTAATGTGCAAACAAGTTATACCGGAA 300
consensus_5430#1      AAG----TTTA---GTGCATTTT--GTGTCGGCTTA-TGTGCAAACAAGTT-TACCGGAA 221
                      *      * **   *  ******  *********** ************** ********

consensus_5430#0      CTTTAACACACTGATCCTGGCTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGT 360
consensus_5430#1      TTAAAACA---TGATCCTG-CTAGTCCTCGAGATAAAACAACGGAAACTCCTAAACTCGT 277
                       *  ****   ******** ****************************************

consensus_5430#0      TCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAG 420
consensus_5430#1      TCAACAAACCACGAGGGTGACTTCATCTGAGTTTGTGGATACTTCCATAACATCGCAAAG 337
                      ************************************************************

consensus_5430#0      GAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATA 480
consensus_5430#1      GAATGATTCTGAAGTCACGACGCCACAAGTGAAAGAAAAAACAGAAAGTACATCATTATA 397
                      ************************************************************

consensus_5430#0      TCTGACAGACAAACCACCATATAAAACAATAGATTCTCCAGAATACTCTAGAGAAACGGA 540
consensus_5430#1      TCTGACAGACAAACCACCATATAAAACAATAGATTCTCTAGAATACTCTAGAGAAACGGA 457
                      ************************************** *********************

consensus_5430#0      TGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGTATCC 600
consensus_5430#1      TGATCCTGGAGTGTCATCTCTACAAGCTACAAAAGGACCAATAAATATATCATTGCATCC 517
                      ******************************************************* ****

consensus_5430#0      GACAGATAAACCATCGTATACGAAAACCAATCATCAGGAGTACACTACAGAATCGGATGA 660
consensus_5430#1      GACAGATGAACCATCGTATACGAAAACCAATCACCAGGAGTACACTACAGAATTGGATGA 577
                      ******* ************************* ******************* ******

consensus_5430#0      TCCTGAGGTAGCTTCGCCACATCGCATAAACCAATCGATCATTCTAAATACACTAGAGAG 720
consensus_5430#1      ACCTGAGGTGGCTTCGCTACATCGCATAAACCAATCGGTCATTCTAAATACACTAGAGAG 637
                       ******** ******* ******************* **********************

consensus_5430#0      AATGATGTCCCAGATGATGTCAGCTTAGCGAACAGAAAAGTTTGGAGATACTTTGCACAA 780
consensus_5430#1      AATGATGTCCCAGATGATGTCA-------------------------------------- 659
                      **********************                                      

consensus_5430#0      AACTAAAGCATCAAAAGAAAGTCACAATAGGTATGAAAACGGACCTAAGATTTCTACATA 840
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      ATAGCACATTACGAACATTGTATTGATACGAAGGCATCCCTACTAGCAATGAGAATGAAA 900
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      AAGTGTGCGACTTTCAGGCGAGAGAAGCATGTAGAAGCATGGGGAGACGGTTGGAAATTC 960
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      GCGGAATTGCTCGGAGGCGCGAGCGTGTTTTGGTTTCTACACAGTTTTTGCACTCACACA 1020
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      ATTACACATGTGTGAATGTGTGCGTTCACTTTCAGCCTGCGCGCTCAGTTTGGTTTTCTC 1080
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      GCAGCGGCATGCGGGTATCGGTGTCTCGCTCGCACTAGTGCAGCGAGTGTTCCTCTGTGC 1140
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      GCTCCCCTTCTTGCCACCACACGAAATCGACAGTTCAGCTCAAGCGTTCGCCGTGAAAGG 1200
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      CTGCGCGCGTGTTAGCCTAAGTCCCGGGCGATCGAAGTTTCGCTAAGTGTTGAAGTGTTG 1260
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      TGCACATTGAAATGAAGTGCGCTTTTCTTTCACCATTTATCTTAAATGTGTGATATGCGC 1320
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      TGCTTTATTTCAATATTTATTTTTGCTGTATCGAACATCAACAACGGGATCCACGCAGTT 1380
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      TGACGGCTCTTTGAAATACGACGATTTTTTTATATTAAGAATTTGTGTGATTTTGTGGCA 1440
consensus_5430#1      ------------------------------------------------------------
                                                                                  

consensus_5430#0      AGATTGTGTGAAGCTATGTGTGAAAATGCCCCTTTATTGC 1480
consensus_5430#1      ----------------------------------------
                                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)