cluster # 5431

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Anopheles gambiae
cluster # 5431 cluster # 5431 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5431#0 length = 800 sequences # 2

consensus_5431#1 length = 685 sequences # 1
consensus_5431#2 length = 219 sequences # 1

consensusID : consensus_5431#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 800
fasta sequence

                              [CCCAGATCCTGGCATACGCTGATGATATAGACATCATTGGTCTGCGGCTCTCCTATGTAGCAGAAGCCTACCAAGGGATTGAGCAGGCGGCAGAGAACCTCGGATTGCAGATAAACGAGGCAAAGACCAAACTGATGGTGGCAACATCAGCGGACCTACCAATAAATAATCCAAANCTACGTAGGCGTGATGTACAGATAGGTGAACGCACTTTTGAAGTCGTCCCAGAATTCACCTATCTTGGGTCAAAGGTCAGCAACGACAACAGTATGGAAGTTGAGTTGCGCGCAAGGATGCTGGCTGCCAACCGGTCATTCTACAGCCTGAAAAAGCAGTTCACCTCAAAGAACCTGTCGCGACGGACGAAGCTGGGACTATATAGTACCTATATAGTACCAGTACTCACATACGCCTCTGAGACATGGACACTGTCCAAATCTGACGAAGCCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCAGAAGGATACTTGGCCCCGTATGTGTGGAAGGACAATGGAGGAGCCGCTATAATGACGAGCTATACGAGATGTACGGCGACCTTACTGTCGTACAGCGTATTAAGCTCGCCAGGCTCCGGTGGGCTGGCCATGTTGTACGCATGGAAACGGACGANCCAGCCCGTAAAGTCTTTTTAGGCCGTCCACAAAGACAGAGGAGGCGTGGTAGGCCCAAATTGAGGTGGCAAGATGGCGTGGAGGCGTCCGCCATTAAGGCCGGGATAACGGACTGGCAGACGAAGGCGCGAGACCGTGAGCGGTTTCCGACACTCCTGAGGCAG]

[+] EMBL BX627397             [CCCAGATCCTGGCATACGCTGATGATATAGACATCATTGGTCTGCGGCTCTCCTATGTAGCAGAAGCCTACCAAGGGATTGAGCAGGCGGCAGAGAACCTCGGATTGCAGATAAACGAGGCAAAGACCAAACTGATGGTGGCAACATCAGCGGACCTACCAATAAATAATCCAAANCTACGTAGGCGTGATGTACAGATAGGTGAACGCACTTTTGAAGTCGTCCCAGAATTCACCTATCTTGGGTCAAAGGTCAGCAACGACAACAGTATGGAAGTTGAGTTGCGCGCAAGGATGCTGGCTGCCAACCGGTCATTCTACAGCCTGAAAAAGCAGTTCACCTCAAAGAACCTGTCGCGACGGACGAAGCTGGGACTATATAGTACCTATATAGTACCAGTACTCACATACGCCTCTGAGACATGGACACTGTCCAAATCTGACGAAGCCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCAGAAGGATACTTGGCCCCGTATGTGTGGAAGGACAATGGAGGAGCCGCTATAATGACGAGCTATACGAGATGTACGGCGACCTTACTGTCGTACAGCGTATTAAGCTCGCCAGGCTCCGGTGGGCTGGCCATGTTGTACGCATGGAAACGGACGANCCAGCCCGTAAAG                                                                                                                                                        ]
[+] EMBL BX609883             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGATACTTGGCCCCGTATGTGTGGAAGGACAATGGAGGAGCCGCTATAATGACGAGCTATACGAGATGTACGGCGACCTCACTGTCGTACAGCGTATTAAGCTCGCCAGGCTCCGGTGGGCTGGCCATGTTGTACGCATGGAAACGGACGACCCAGCCCGTAAAGTCTTTTTAGGCCGTCCACAAAGACAGAGGAGGCGTGGTAGGCCCAAATTGAGGTGGCAAGATGGCGTGGAGGCGTCCGCCATTAAGGCCGGGATAACGGACTGGCAGACGAAGGCGCGAGACCGTGAGCGGTTTCCGACACTCCTGAGGCAG]




>consensus_5431#0
CCCAGATCCTGGCATACGCTGATGATATAGACATCATTGGTCTGCGGCTCTCCTATGTAG
CAGAAGCCTACCAAGGGATTGAGCAGGCGGCAGAGAACCTCGGATTGCAGATAAACGAGG
CAAAGACCAAACTGATGGTGGCAACATCAGCGGACCTACCAATAAATAATCCAAANCTAC
GTAGGCGTGATGTACAGATAGGTGAACGCACTTTTGAAGTCGTCCCAGAATTCACCTATC
TTGGGTCAAAGGTCAGCAACGACAACAGTATGGAAGTTGAGTTGCGCGCAAGGATGCTGG
CTGCCAACCGGTCATTCTACAGCCTGAAAAAGCAGTTCACCTCAAAGAACCTGTCGCGAC
GGACGAAGCTGGGACTATATAGTACCTATATAGTACCAGTACTCACATACGCCTCTGAGA
CATGGACACTGTCCAAATCTGACGAAGCCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCA
GAAGGATACTTGGCCCCGTATGTGTGGAAGGACAATGGAGGAGCCGCTATAATGACGAGC
TATACGAGATGTACGGCGACCTTACTGTCGTACAGCGTATTAAGCTCGCCAGGCTCCGGT
GGGCTGGCCATGTTGTACGCATGGAAACGGACGANCCAGCCCGTAAAGTCTTTTTAGGCC
GTCCACAAAGACAGAGGAGGCGTGGTAGGCCCAAATTGAGGTGGCAAGATGGCGTGGAGG
CGTCCGCCATTAAGGCCGGGATAACGGACTGGCAGACGAAGGCGCGAGACCGTGAGCGGT
TTCCGACACTCCTGAGGCAG

consensusID : consensus_5431#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 685
fasta sequence

                              [CCGATTTGTTTCTGGCCGTGGAAGCCGCGCCCGACGAACGCTATCTTTATTCTGGATAGATAATAGATAATAGATAATATAACATTCTTAGAGGCATGTAACATTATAAGATTTATTAGGCATGAAAAAAAAAAACAATTAAAAACAACCGTAACGTGAAGTTGTTGCTGAAAACTGACACCCTAAAGATATCAAAGGAACGTTTTGCACATATCGTTCACGGCCGTTCAGATATGGGAAAGCTCTATGCAAAAATGCTGCCGCGCGAGCTCACATTTGATCAAAAACAACAACGAGTTCATGATTGGCAGCAGTGTTTGGAGCTGTTTAAGCAAAAATAAATCATTTATGCGTCGGCATGTTGCCATAGATGAGACCTAACTTCACGTAACGAAGAAAAAACGTAACGATCAGCTGGCAGGGTTATGGCGTAAGCTTCTGTTTGGGACTCGCAAAGAACTATCTTCATCGACTCTCTTGAGAAAGGAAAGACAATTAACAGTGACTATCACATCGAGTACTCATTGCATCGTACCGGTACTCTGAGACATGGACGCTGTTCAAATCTGACGAAACCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCAGAAGGATTCTTGGCCCAGTATGTGTGAAAGGGCTAGGGAGGAGTTGTTGTAACGACGAGATATACGAGAGCTATGGC]

[+] EMBL BM639321             [CCGATTTGTTTCTGGCCGTGGAAGCCGCGCCCGACGAACGCTATCTTTATTCTGGATAGATAATAGATAATAGATAATATAACATTCTTAGAGGCATGTAACATTATAAGATTTATTAGGCATGAAAAAAAAAAACAATTAAAAACAACCGTAACGTGAAGTTGTTGCTGAAAACTGACACCCTAAAGATATCAAAGGAACGTTTTGCACATATCGTTCACGGCCGTTCAGATATGGGAAAGCTCTATGCAAAAATGCTGCCGCGCGAGCTCACATTTGATCAAAAACAACAACGAGTTCATGATTGGCAGCAGTGTTTGGAGCTGTTTAAGCAAAAATAAATCATTTATGCGTCGGCATGTTGCCATAGATGAGACCTAACTTCACGTAACGAAGAAAAAACGTAACGATCAGCTGGCAGGGTTATGGCGTAAGCTTCTGTTTGGGACTCGCAAAGAACTATCTTCATCGACTCTCTTGAGAAAGGAAAGACAATTAACAGTGACTATCACATCGAGTACTCATTGCATCGTACCGGTACTCTGAGACATGGACGCTGTTCAAATCTGACGAAACCCTCTTAGCCGCGTTCGAGAGGAAGATGCTCAGAAGGATTCTTGGCCCAGTATGTGTGAAAGGGCTAGGGAGGAGTTGTTGTAACGACGAGATATACGAGAGCTATGGC]




>consensus_5431#1
CCGATTTGTTTCTGGCCGTGGAAGCCGCGCCCGACGAACGCTATCTTTATTCTGGATAGA
TAATAGATAATAGATAATATAACATTCTTAGAGGCATGTAACATTATAAGATTTATTAGG
CATGAAAAAAAAAAACAATTAAAAACAACCGTAACGTGAAGTTGTTGCTGAAAACTGACA
CCCTAAAGATATCAAAGGAACGTTTTGCACATATCGTTCACGGCCGTTCAGATATGGGAA
AGCTCTATGCAAAAATGCTGCCGCGCGAGCTCACATTTGATCAAAAACAACAACGAGTTC
ATGATTGGCAGCAGTGTTTGGAGCTGTTTAAGCAAAAATAAATCATTTATGCGTCGGCAT
GTTGCCATAGATGAGACCTAACTTCACGTAACGAAGAAAAAACGTAACGATCAGCTGGCA
GGGTTATGGCGTAAGCTTCTGTTTGGGACTCGCAAAGAACTATCTTCATCGACTCTCTTG
AGAAAGGAAAGACAATTAACAGTGACTATCACATCGAGTACTCATTGCATCGTACCGGTA
CTCTGAGACATGGACGCTGTTCAAATCTGACGAAACCCTCTTAGCCGCGTTCGAGAGGAA
GATGCTCAGAAGGATTCTTGGCCCAGTATGTGTGAAAGGGCTAGGGAGGAGTTGTTGTAA
CGACGAGATATACGAGAGCTATGGC

consensusID : consensus_5431#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 219
fasta sequence

                              [AGGCAGAATCGCCACGAGNTGTANCGACGGACGAAGCTGGGACTCTATAGTACTATATAGTTCCGGTACTCACATACGCCTCTGAGACATGGAGACTGTCCAAATCTGACGAAGCCCTCGTGTAGGCCGCGTTCGAGAGGAAGGATGCTCAGAAGAGATACTTGGATCCCGGTAATGGTGTGGAAGGACAATGGAGGAGCCGGTAGTAGAGTGACGAGG]

[+] EMBL BX468017             [AGGCAGAATCGCCACGAGNTGTANCGACGGACGAAGCTGGGACTCTATAGTACTATATAGTTCCGGTACTCACATACGCCTCTGAGACATGGAGACTGTCCAAATCTGACGAAGCCCTCGTGTAGGCCGCGTTCGAGAGGAAGGATGCTCAGAAGAGATACTTGGATCCCGGTAATGGTGTGGAAGGACAATGGAGGAGCCGGTAGTAGAGTGACGAGG]




>consensus_5431#2
AGGCAGAATCGCCACGAGNTGTANCGACGGACGAAGCTGGGACTCTATAGTACTATATAG
TTCCGGTACTCACATACGCCTCTGAGACATGGAGACTGTCCAAATCTGACGAAGCCCTCG
TGTAGGCCGCGTTCGAGAGGAAGGATGCTCAGAAGAGATACTTGGATCCCGGTAATGGTG
TGGAAGGACAATGGAGGAGCCGGTAGTAGAGTGACGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5431#0      CCCAGATCCTGGCATACGCTGATGATATAGACATCATTGGTCTGCGGCTCTCCTATGTAG 60
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      ------------------------------------CCGATTTGTTTCTGGCCGTGGAAG 24
                                                                                  

consensus_5431#0      CAGAAGCCTACCAAGGGATTGAGCAGGC--GGCAGAGAACCTCGGATTGCAGATAAACGA 118
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      CCGCGCCCGACGAACGCTATCTTTATTCTGGATAGATAATAGATAATAGATAATATAACA 84
                                                                                  

consensus_5431#0      GGCAAAGACCAAACTGATGGTGGCAACATCAGCGGACCT---ACCAATAAATAATCCAAA 175
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      TTCTTAGAGGCATGTAACATTATAAGATTTATTAGGCATGAAAAAAAAAAACAATTAAAA 144
                                                                                  

consensus_5431#0      NCTACGTAGGCGTGATGTACAGATAGGTGAACGCACTTTTGAAGTCGTCCCAGAATTCAC 235
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      ACAACCGTAACGTGAAGTTGTTGCTGAAAACTGACACCCTAAAGATATCAAAGGAAC--- 201
                                                                                  

consensus_5431#0      CTATCTTGGGTCAAAGGTCAGCAACGACAACAGTATGGAAGTTGAGTTGCGCGCAAGGAT 295
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      --GTTTTGCACATATCGTTCACGGCCGTTCAGATATGGGA---AAGCTCTATGCAAAAAT 256
                                                                                  

consensus_5431#0      GCTGGCTGCCAACCGGTCATTCTACAGCCTGAAAAAGCAGTTCACCTCAAAGAACCTGTC 355
consensus_5431#2      ----------------------------------AGGCAG--AATCGCCACGAGN-TGTA 23
consensus_5431#1      GCTGCCGCGCGAGCTCACATTTGA---TCAAAAACAACAA--CGAGTTCATGATT-GGCA 310
                                                           **          * **    *  

consensus_5431#0      GCGACGGACGAAGCTGGGACTATATAGTACCTATATAGTACCAGTACTCACATACGCCTC 415
consensus_5431#2      NCGACGGACGAAGCTGGGACTCTATAGTAC-TATATAGTTCCGGTACTCACATACGCCTC 82
consensus_5431#1      GCAGTGTTTGGAGCTG----TTTA-AGCAAAAATAAATCATTTATGCGTCGGCATGTTGC 365
                       *   *   * *****    * ** ** *   *** *       * *      * *   *

consensus_5431#0      TGAGACATGGACACTGTCCAAATCTGACGAAGCCCTCTTA---GCCGCGTTCGAGAGGAA 472
consensus_5431#2      TGAGACATGGAGACTGTCCAAATCTGACGAAGCCCTCGTGTAGGCCGCGTTCGAGAGGAA 142
consensus_5431#1      C-ATAGATGAGACCTAACTTCACGTAACGAAGAAAAAAC----GTAACGATCAGCTGGCA 420
                        * * ***    **  *   *  * ******           *   ** **    ** *

consensus_5431#0      G-ATGCTCAGAAG-GATACTTGG--CCCCGTAT--GTGTGGAAGGACAATGGAGGAGCCG 526
consensus_5431#2      GGATGCTCAGAAGAGATACTTGGATCCCGGTAATGGTGTGGAAGGACAATGGAGGAGCCG 202
consensus_5431#1      G--GGTTATGGCGTAAGCTTCTG--TTTGGGACTCGCAAAGAACTATCTTCATCGACTCT 476
                      *   * *  *  *  *   *  *      * *   *    ***  *   *    **  * 

consensus_5431#0      CTAT---AATGACGAGCTATACGAGATGTACGGCGACCTTACTGTCGTACAGCGTATTAA 583
consensus_5431#2      GTAGTAGAGTGACGAGG------------------------------------------- 219
consensus_5431#1      CT-------TGAGAAAGGAAAGACAATTAACAGTGACTATCACATCGAGTACTCATTGCA 529
                       *       ***  *                                             

consensus_5431#0      GCTCGCCAGGCTCCGGTGGGCTGGCCATGTTGTACGCATGGAAACGGACGANCCAGCCCG 643
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      TCGTACCGGTACTCTGAGACATGG--ACGCTGTTCAAATCTGACGAAACCCTCTTAGCCG 587
                                                                                  

consensus_5431#0      TAAAGTCTTTTTAGGCCGTCCACAAAGACAGAGGAGGCGTGGTAGGCCCAAATTGAGGTG 703
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      C---GTTCGAGAGGAAGATGCTCAGAAGGATTCTTGGCCCAGTATGTGTGAAA-GGGCTA 643
                                                                                  

consensus_5431#0      GCAAGATGGCGTGGAGGCGTCCGCCATTAAGGCCGGGATAACGGACTGGCAGACGAAGGC 763
consensus_5431#2      ------------------------------------------------------------
consensus_5431#1      GGGAGGAGTTGTTGTAACGACGAGATATACGAGAGCTATGGC------------------ 685
                                                                                  

consensus_5431#0      GCGAGACCGTGAGCGGTTTCCGACACTCCTGAGGCAG 800
consensus_5431#2      -------------------------------------
consensus_5431#1      -------------------------------------