These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5439#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 704 fasta sequence [CCGCGGCTGGTTGGTGAATGCGATATCGTGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCGAGACGGCACCGCACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGACACCTTCCGCG-AGGTGGAGCGTGACCAG-CCCGAGC-GGGTGGTCCTGTTTTCCCAGTACCCG-CAGTACAGCTGTGCCACGTCCGGCTCGAGCTTCAATGCCATCTACACCCACTTCAAGGAGAACCCGCTGAACGGGCTGGCGCAGGCCCGCTGGAGCGTGATCGACCGGT] [+] EMBL BM597883 [CCGCGGCTGGTTGGTGAATGCGATATCGTGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCGAGACGGCACCGCACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGACACCTTCCGCG AGGTGGAGCGTGACCAG CCCGAGC GGGTGGTCCTGTTTTCCCAGTACCCG CAGTACAGCTGTGCCACGTCCGGCTCGAGCTTCAATGCCATCTACACCCACTTCAAGGAGAACCCGCTGAACGGGCTGGCGCAGGCCCGCTGGAGCGTGATCGACCG ] [+] EMBL BM604554 [ ccgGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCGAGACGGCACCGCACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGACACCTTCCGCGAAGGTGGAGCGTGACCAGCCCCGAGCGGGGTGGTCCTGTTTTCCCAGTACCCGCCAGTACAGCTGTGCCACGTC ] [+] EMBL BM614763 [ ccgCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAATACGGACCAGGTGCACGACTACCTGCACCGCATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCAGGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCGGAGACAGCACCGCACAAACACTACGTTGCGTTCCGCTACGTGAACCCGCTCACGGAGGACACCTTCCGCG AGGTGGAGCGTGACCAG CCCGAGC GGGTGGTCCTGTTTTCCCAGTACCCG CAGTACAGCTGTGCCACGTCCGGCTCGAGCTTCAATGCCATCTACACCCACTTCAAGGAGAACCCGCTGAACGGGCTGGCGCACGCCCGCTGGAGCGTGATCGACCGGT] consensusID : consensus_5439#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [TNGCCCGAGGTATGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAATACGGACCAGGTGCACGACTACCTGCACCGATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGTGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCCNGTGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGGCCGGAGACAGCACCGACACAAACACTACGTAGCGTTCCGCTACGTGAACCCGCTCACGGAGGACACCTTCNCGCGATGTGGAGCGTGACCAGCCGAGCGGGTGGTACTGTGGCCCAGTACCCGCAGTACAGCTGTGCCACGTCCGGCTACGAGCTTCNATGCCATCTACA] [+] EMBL AL934627 [TNGCCCGAGGTATGCGTGTGTTGTCTTTTTTTTCTCTACAAGACGAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTATCTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAACCATGGCCTGCAGCAATTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCTCAACATGGGAGGGCCCCAAAATACGGACCAGGTGCACGACTACCTGCACCGATCATGACCGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACGTCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGTGCGGTTCGCCGATTCTAAAGTGGACGAACGTGCCNGTGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGGCCGGAGACAGCACCGACACAAACACTACGTAGCGTTCCGCTACGTGAACCCGCTCACGGAGGACACCTTCNCGCGATGTGGAGCGTGACCAGCCGAGCGGGTGGTACTGTGGCCCAGTACCCGCAGTACAGCTGTGCCACGTCCGGCTACGAGCTTCNATGCCATCTACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5439#0 CCGCGGCTGGTTGGTGAATGCGATATCGTGCGTGTGTTGTCTTTTTTTTCTCTACAAGAC 60 consensus_5439#1 ---------------TNGCCCGAGGT-ATGCGTGTGTTGTCTTTTTTTTCTCTACAAGAC 44 *** * ******************************** consensus_5439#0 GAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTAT 120 consensus_5439#1 GAAACGAAACGGGCAAGTTACGTCGCTCCCGGAGAGCTGTAATTTGTTAAGTGAAAGTAT 104 ************************************************************ consensus_5439#0 CTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGCACAGCCAA 180 consensus_5439#1 CTAATTCCCCAACACCAATATGCATTCGCTGCTGAAGCTGTTTTCATCCGGTACAGCCAA 164 *************************************************** ******** consensus_5439#0 CCATGGCCTGCAGCAATTCCGCACCGTCGCCACCAAACCACGCACGGCCGTGGTTATGCT 240 consensus_5439#1 CCATGGCCTGCAGCAATTCCGCACCGTCACCACCAAACCACGCACGGCCGTGGTTATGCT 224 **************************** ******************************* consensus_5439#0 CAACATGGGAGGGCCCCAAAACACGGACCAGGTACACGACTACCTGCACCGCATCATGAC 300 consensus_5439#1 CAACATGGGAGGGCCCCAAAATACGGACCAGGTGCACGACTACCTGCACCG-ATCATGAC 283 ********************* *********** ***************** ******** consensus_5439#0 CGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACG 360 consensus_5439#1 CGATCGCGATATGATTCAGCTGCCGGTGCAAAGCAAACTCGGTCCCTGGATAGCGAAACG 343 ************************************************************ consensus_5439#0 TCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGG-GCGGTTCGCCGATTCTAA 419 consensus_5439#1 TCGCACGCCGGAGGTGCAGAAAAAGTACAGCGAAATCGGGGTGCGGTTCGCCGATTCTAA 403 ***************************************** ****************** consensus_5439#0 AGTGGACGAACGTGCAGG--GCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGCCCG- 476 consensus_5439#1 AGTGGACGAACGTGCCNGTGGCGAGCTGATGTGCAAGCAGCTGGACAAGCTATCGGCCGG 463 *************** * *********************************** *** consensus_5439#0 AGACGGCACCG-CACAAACACTACGTTGCGTTCCGGTACGTGAACCCGCTCACGGAGGAC 535 consensus_5439#1 AGACAGCACCGACACAAACACTACGTAGCGTTCCGCTACGTGAACCCGCTCACGGAGGAC 523 **** ****** ************** ******** ************************ consensus_5439#0 ACCTTCC-GCGAGGTGGAGCGTGACCAGCCCGAGCGGGTGGTCCTGTTTTCCCAGTACCC 594 consensus_5439#1 ACCTTCNCGCGATGTGGAGCGTGACCAGCC-GAGCGGGTGGTACTGTGG-CCCAGTACCC 581 ****** **** ***************** *********** **** ********** consensus_5439#0 GCAGTACAGCTGTGCCACGTCCGGCT-CGAGCTTCAATGCCATCTACACCCACTTCAAGG 653 consensus_5439#1 GCAGTACAGCTGTGCCACGTCCGGCTACGAGCTTCNATGCCATCTACA------------ 629 ************************** ******** ************ consensus_5439#0 AGAACCCGCTGAACGGGCTGGCGCAGGCCCGCTGGAGCGTGATCGACCGGT 704 consensus_5439#1 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||