These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence [CAAAATGTGATATGTTTGTTTTGTACTTTTTTTTAATCTTTTTGGTATTGCCAACGGACCAAGAAAGGCGGAAAACTCGCGCACTGGAACACGCTCCCTCCGGAACCATTTTCTGGGGGAGTGGGATTTTTTTTTTAATTTTATCTCTCAACATTCCAATCTCAACAAAAAACACGCCATTCCCCGAAGCTAACGAAAAGGGCAGATGTTAGGGAAGTGAGCGCGAATCTGTTGCTGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCACAAACTCGATGCAGCATAGTGTGTAGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCCAAGTGCCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACC] [+] EMBL BX620825 [CAAAATGTGATATGTTTGTTTTGTACTTTTTTTTAATCTTTTTGGTATTGCCAACGGACCAAGAAAGGCGGAAAACTCGCGCACTGGAACACGCTCCCTCCGGAACCATTTTCTGGGGGAGTGGGATTTTTTTTTTAATTTTATCTCTCAACATTCCAATCTCAACAAAAAACACGCCATTCCCCGAAGCTAACGAAAAGGGCAGATGTTAGGGAAGTGAGCGCGAATCTGTTGCTGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCACAAACTCGATGCAGCATAGTGTGTAGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCCAAGTGCCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACC] consensusID : consensus_544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence [GCAGAATCNCCACGAGGCGAAAAGGGCAGATGTTAGGGAACNTGAGCGCGAATCTGTTGCTGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCACAAACTCGATGCAGCATAGTGTGTAGGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCAAGTGCCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACCCCGGNATAGACCACGCACAGCAGGAGAATTATTATAGTGTAAGAAACCAGC] [+] EMBL BX467668 [GCAGAATCNCCACGAGGCGAAAAGGGCAGATGTTAGGGAACNTGAGCGCGAATCTGTTGCTGAACTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGTACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTGTAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCACAAACTCGATGCAGCATAGTGTGTAGGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACCGTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCAAGTGCCTATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACCCCGGNATAGACCACGCACAGCAGGAGAATTATTATAGTGTAAGAAACCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_544#0 CAAAATGTGATATGTTTGTTTTGTACTTTTTTTTAATCTTTTTGGTATTGCCAACGGACC 60 consensus_544#1 ------------------------------------------------------------ consensus_544#0 AAGAAAGGCGGAAAACTCGCGCACTGGAACACGCTCCCTCCGGAACCATTTTCTGGGGGA 120 consensus_544#1 ------------------------------------------------------------ consensus_544#0 GTGGGATTTTTTTTTTAATTTTATCTCTCAACATTCCAATCTCAACAAAAAACACGCCAT 180 consensus_544#1 -----------------------------------------------------GCAGAAT 7 * ** consensus_544#0 TCCCCGAAGCTAACGAAAAGGGCAGATGTTAGGGAA-GTGAGCGCGAATCTGTTGCTGAA 239 consensus_544#1 CNCCACGAG---GCGAAAAGGGCAGATGTTAGGGAACNTGAGCGCGAATCTGTTGCTGAA 64 ** ** *********************** ********************** consensus_544#0 CTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGT 299 consensus_544#1 CTGAACTGCTTGCGAATGCTCACACCGGTAGGAAGGAAGGAAGTACATCTGTCGCTGTGT 124 ************************************************************ consensus_544#0 ACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTG 359 consensus_544#1 ACTGTGATTTGCAAAAGGTATTGTTTTATGTGGTTTTAGTTGTTTGTTGTTGTTGTTGTG 184 ************************************************************ consensus_544#0 TAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCA 419 consensus_544#1 TAGGCAAGCAAGAAAAACGGTGGCCCGCAGCATTTAGGGTGCAGTTAGTAGGCTCGCGCA 244 ************************************************************ consensus_544#0 CAAACTCGATGCAGCATAGTGTGTAG-AAATTGTTAGGGACAGCGTTAGAGCGTTAGACC 478 consensus_544#1 CAAACTCGATGCAGCATAGTGTGTAGGAAATTGTTAGGGACAGCGTTAGAGCGTTAGACC 304 ************************** ********************************* consensus_544#0 GTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCCCAAGTGCCT 538 consensus_544#1 GTAAGCAAGGCAACTGCCGCCAAGTGCCCATTTTTGGAAACATCCGCCCCC-AAGTGCCT 363 *************************************************** ******** consensus_544#0 ATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACC------------- 585 consensus_544#1 ATCGAGAAAGTAATCACTATAGAGTGTACGCGCCGTACACACAGACCCCGGNATAGACCA 423 *********************************************** consensus_544#0 -------------------------------------- consensus_544#1 CGCACAGCAGGAGAATTATTATAGTGTAAGAAACCAGC 461 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||