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Anopheles gambiae
cluster # 5442 cluster # 5442       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5442#0 length = 1274 sequences # 1  
consensus_5442#1 length = 880 sequences # 3  

consensusID : consensus_5442#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1274
fasta sequence
                              [TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTGTGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTTTTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTTGTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGTATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACTGCCAAACATTCGAAGAAATGGTTCAACCGTGAATATTGACGTGACACACGTTGGTTAAACGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTTGGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTCAACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTTACACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTANAANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAACAATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAACTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAATCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGATAATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTGACCCCCGNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTNTCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCCAGTTGCTATCTGATATAAAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAGAGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTCAGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTATTGAGTATCGTAGGATATATAAA]

[+] EMBL AL934843             [TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTGTGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTTTTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTTGTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGTATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACTGCCAAACATTCGAAGAAATGGTTCAACCGTGAATATTGACGTGACACACGTTGGTTAAACGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTTGGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTCAACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTTACACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTANAANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAACAATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAACTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAATCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGATAATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTGACCCCCGNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTNTCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCCAGTTGCTATCTGATATAAAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAGAGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTCAGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTATTGAGTATCGTAGGATATATAAA]


>consensus_5442#0 TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTG GTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTG TGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTT TTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTT GTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGT ATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACT GCCAAACATTCGAAGAAATGGTTCAACCGTGAATATTGACGTGACACACGTTGGTTAAAC GTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTTG GAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTCA ACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTTACACC GGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTANAAN NACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAACAAT CTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAACTT TNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAATCA ACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGATAAT TCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTGACC CCCGNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTNTCCNC GAAAACAGCGCGGTGGGGATTNGTCAAACAANCCAGTTGCTATCTGATATAAAGTCCACC AGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAGAGTTCTATC CGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTCAGTAATGAT GAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTATTGAGTATC GTAGGATATATAAA



consensusID : consensus_5442#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 880
fasta sequence
                              [CTCTCACCCCATTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATCTAGCGAAGCACCCAACACCCAATCGAAGCATTAAATAGTGTAGTGTTTGACCCATCGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACATGTATATGTATGTGTATGTGTGAGTGTATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTTTGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAAAATGTTTAGATTCGTCCCTAACTGTATCGATT]

[+] EMBL BX627734             [CTCTCACCCCATTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATCTAGCGAAGCACCCAACACCCAATCGAAGCATTAAATAGTGTAGTGTTTGACCCATCGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACATGTATATGTATGTGTATGTGTGAGTGTATATATACTTAGCACAAAGTACTTAGCTAAAGTAGATCGAGAAACAAAAAAGAAGAT AAAAGGGACTCCTTAAAAAGGGGTGCTCCGGCAAGCTCAATACCGTTGAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGCAAAAGTAAAGAGCTGCCCTTTACGTTACATTCGAGAAGCGTTACGTGCGAAATTAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATATAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTACATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGGATTTTCAAGTAGTTTTGGATGC                                                                                                         ]
[+] EMBL BX628894             [                                                                                                                                   GTGCATTTGTGGCGGAGCCCCGCAAAAGGGCCGCAGATCACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACGTGTATATGTATGTGTATGTGTGAGTGTATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGG                                                                                                ]
[+] EMBL BX615573             [                                                                                                                                                                                                                                                TGTGAGTGTATATATGCTTAGCACAAAGTACTTTGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCATATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTTTGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAAAATGTTTAGATTCGTCCCTAACTGTATCGATT]


>consensus_5442#1 CTCTCACCCCATTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGG AATCGAATCTAGCGAAGCACCCAACACCCAATCGAAGCATTAAATAGTGTAGTGTTTGAC CCATCGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTT ACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACATGTATATGTATGTGTATG TGTGAGTGTATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAGCGAGAAACAAAAAA GAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCC TCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAA AAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCC AAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATT TAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTA GTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGATGATTAACG ATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTC GTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCT TGGGGTTTTGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCAT TTTCTTAAAATGTTTAGATTCGTCCCTAACTGTATCGATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5442#0      TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTG 60
consensus_5442#1      ------------------------------------------------------------
                                                                                  

consensus_5442#0      GTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTG 120
consensus_5442#1      ------------------------------------------------------------
                                                                                  

consensus_5442#0      TGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTT 180
consensus_5442#1      ------------------------------------------------------------
                                                                                  

consensus_5442#0      TTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTT 240
consensus_5442#1      -------------------------------------------------CTCTCACCCCA 11
                                                                        * * * *   

consensus_5442#0      GTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGT 300
consensus_5442#1      TTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATC-T 70
                       * ** ****     * *   *    *   *  **  ***  ***** *  ** **   *

consensus_5442#0      ATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACT 360
consensus_5442#1      AGCGAAGCACCCAACACCCAA-TCGAAGCATTAAATAGTGT----AGTGTTTGACCCAT- 124
                      *    *  *     **   ** * **  ****   *  *      *   *** *** *  

consensus_5442#0      GCCAAACATTCGAAGAAATGGTTCAACCGTG-AATATTGACGTGACACACGTTGGTTAAA 419
consensus_5442#1      --CGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTA- 181
                        * ****   * *    ***   * **  * ** *  * **      **     ** * 

consensus_5442#0      CGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTT 479
consensus_5442#1      CTCTTATCCGAGTGTGTATTATTAGTCATT---ATGAGAAAACATGTATATGTATGTGTA 238
                      *   *   **   ***  **   *   * *     * ****    ***     **   * 

consensus_5442#0      GGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTC 539
consensus_5442#1      TGTGTGAGTG-----TATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAG--CGAGA 291
                       * *  * **     **        ** **      *   * **    ** *   *    

consensus_5442#0      AACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTT--AC 597
consensus_5442#1      AACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGG---GGAGCTCCGGCAAGCTCAAT 348
                      ***  ** *  * *    *    ***   ** ** *       ** * * *  * *  * 

consensus_5442#0      ACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTAN 657
consensus_5442#1      ACCGTTTAACCCT---CAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTT---TAT 402
                      **** ***  * *       *         *  *   ***  **  * **   *   ** 

consensus_5442#0      AANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAAC 717
consensus_5442#1      TGCTTCAAACAAGGG---TAAAAGTAACGAGATGCCC--TTTGCGTTACATTCGAGAAGC 457
                           ** *** **    ***  ***** ***  * *         *** **     * *

consensus_5442#0      AATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAA 777
consensus_5442#1      G-----TTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAA 512
                            * * **        * **  **  *** * * **       ***        **

consensus_5442#0      CTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAA 837
consensus_5442#1      ---------TAATAGAACCAAAAATACAAATAG--GATTTAATGAGATTAAAG-CCTGTT 560
                               *** * * * * * * **         *  **      ****   **    

consensus_5442#0      TCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGAT 897
consensus_5442#1      CTGTCCAGTACTTTT--------TATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAA 612
                          * * * * ***        *** ***    *** *        * * * * *  * 

consensus_5442#0      AATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTG 957
consensus_5442#1      AACTTTGAAAAT---TGGGTTTGATG-ACCTCAGATAAGTTGATGATTAACGATTAAGTG 668
                      ** *   ** **   **      *** *     *  * ** *** * * *  * ******

consensus_5442#0      ACCCCC--GNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTN 1015
consensus_5442#1      TCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTA 728
                       * *           **  * **   *    *  **  ** *    ** *     *  * 

consensus_5442#0      TCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCC--AGTTGCTATCT--GATATA 1071
consensus_5442#1      ATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTT 788
                          *  * *     * **     **  ** ** **      * **** ***  *   * 

consensus_5442#0      AAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAG 1131
consensus_5442#1      TGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAA 848
                         *       **** *   * *  * *   *   *     * *   *       * ** 

consensus_5442#0      AGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTC 1191
consensus_5442#1      AATGTTT----AGATTCGTCCCTAACTGTATCGATT------------------------ 880
                      * *  *     *    ****  * *   **** *                          

consensus_5442#0      AGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTA 1251
consensus_5442#1      ------------------------------------------------------------
                                                                                  

consensus_5442#0      TTGAGTATCGTAGGATATATAAA 1274
consensus_5442#1      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)