These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5442#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1274 fasta sequence [TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTGTGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTTTTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTTGTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGTATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACTGCCAAACATTCGAAGAAATGGTTCAACCGTGAATATTGACGTGACACACGTTGGTTAAACGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTTGGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTCAACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTTACACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTANAANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAACAATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAACTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAATCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGATAATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTGACCCCCGNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTNTCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCCAGTTGCTATCTGATATAAAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAGAGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTCAGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTATTGAGTATCGTAGGATATATAAA] [+] EMBL AL934843 [TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTGTGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTTTTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTTGTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGTATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACTGCCAAACATTCGAAGAAATGGTTCAACCGTGAATATTGACGTGACACACGTTGGTTAAACGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTTGGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTCAACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTTACACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTANAANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAACAATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAACTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAATCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGATAATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTGACCCCCGNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTNTCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCCAGTTGCTATCTGATATAAAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAGAGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTCAGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTATTGAGTATCGTAGGATATATAAA] consensusID : consensus_5442#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 880 fasta sequence [CTCTCACCCCATTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATCTAGCGAAGCACCCAACACCCAATCGAAGCATTAAATAGTGTAGTGTTTGACCCATCGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACATGTATATGTATGTGTATGTGTGAGTGTATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTTTGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAAAATGTTTAGATTCGTCCCTAACTGTATCGATT] [+] EMBL BX627734 [CTCTCACCCCATTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATCTAGCGAAGCACCCAACACCCAATCGAAGCATTAAATAGTGTAGTGTTTGACCCATCGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACATGTATATGTATGTGTATGTGTGAGTGTATATATACTTAGCACAAAGTACTTAGCTAAAGTAGATCGAGAAACAAAAAAGAAGAT AAAAGGGACTCCTTAAAAAGGGGTGCTCCGGCAAGCTCAATACCGTTGAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGCAAAAGTAAAGAGCTGCCCTTTACGTTACATTCGAGAAGCGTTACGTGCGAAATTAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATATAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGGTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTACATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGGATTTTCAAGTAGTTTTGGATGC ] [+] EMBL BX628894 [ GTGCATTTGTGGCGGAGCCCCGCAAAAGGGCCGCAGATCACAGCCCTTTACTCTTATCCGAGTGTGTATTATTAGTCATTATGAGAAAACGTGTATATGTATGTGTATGTGTGAGTGTATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCAGATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGG ] [+] EMBL BX615573 [ TGTGAGTGTATATATGCTTAGCACAAAGTACTTTGCTAAAGTAGAGCGAGAAACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGGGGAGCTCCGGCAAGCTCAATACCGTTTAACCCTCAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTTTATTGCTTCAAACAAGGGTAAAAGTAACGAGATGCCCTTTGCGTTACATTCGAGAAGCGTTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAATAATAGAACCAAAAATACAAATAGGATTTAATGAGATTAAAGCCTGTTCTGTCCAGTACTTTTTATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAAAACTTTGAAAATTGGGTTTGATGACCTCATATAAGTTGATGATTAACGATTAAGTGTCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTAATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTTTGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAAAATGTTTAGATTCGTCCCTAACTGTATCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5442#0 TCAGCAGAATTGCCCCGAGGTNCATTTTGAAAATTGGGTTTGAAAACCTCAGATAAGTTG 60 consensus_5442#1 ------------------------------------------------------------ consensus_5442#0 GTGATTAACGATTAAGTGTCGCTTTAAAACAACTAGTGTGGTTGACCTGTGCATACATTG 120 consensus_5442#1 ------------------------------------------------------------ consensus_5442#0 TGACCAATAATTCGTTGTGTAATTACTCATAATATCCATTACAAGTTTTTCCAAGAAGTT 180 consensus_5442#1 ------------------------------------------------------------ consensus_5442#0 TTTGAATTGCTTTCTTGGGTTTTTTGTCTCTGTTCAATTTCAATTTTTGTTTTAAACTTT 240 consensus_5442#1 -------------------------------------------------CTCTCACCCCA 11 * * * * consensus_5442#0 GTGACTCACGATATTCTCNNNAGCATATTTCCAAAAATGTTAAGATTCGTTTCTAACTGT 300 consensus_5442#1 TTCACACACGCACAGCACAACATTCCAACCCACAAGGTGTACAGATTGGAATCGAATC-T 70 * ** **** * * * * * ** *** ***** * ** ** * consensus_5442#0 ATTTGATTATTTCCCAAAAAAGTAGATTCATTTGGTTCTANCAAAATCATTTAACCGACT 360 consensus_5442#1 AGCGAAGCACCCAACACCCAA-TCGAAGCATTAAATAGTGT----AGTGTTTGACCCAT- 124 * * * ** ** * ** **** * * * *** *** * consensus_5442#0 GCCAAACATTCGAAGAAATGGTTCAACCGTG-AATATTGACGTGACACACGTTGGTTAAA 419 consensus_5442#1 --CGAACAGGTGCATTTGTGGCAGAGCCCCGCAAAAGGGCCGCAGAGTACAGCCCTTTA- 181 * **** * * *** * ** * ** * * ** ** ** * consensus_5442#0 CGTCTTCTCGTAAGTGCCTTCACAACTACTTCTNNGGGAAACACCGTAACAACATCCTTT 479 consensus_5442#1 CTCTTATCCGAGTGTGTATTATTAGTCATT---ATGAGAAAACATGTATATGTATGTGTA 238 * * ** *** ** * * * * **** *** ** * consensus_5442#0 GGAGAAACTGACTCATAACAGAAGCTATCATGNGTCATAAACCTCCTTTANACTTCCGTC 539 consensus_5442#1 TGTGTGAGTG-----TATATATGCTTAGCACAAAGTACTTAGCTAAAGTAGAG--CGAGA 291 * * * ** ** ** ** * * ** ** * * consensus_5442#0 AACGTAATAACAAAACTGANCAAACCTAATANAACGCTTTACNGCCCAGACCGGTT--AC 597 consensus_5442#1 AACAAAAAAGAAGATAAAAAGGGACCCCTTAAAAAGG---GGAGCTCCGGCAAGCTCAAT 348 *** ** * * * * *** ** ** * ** * * * * * * consensus_5442#0 ACCGGTTATNCATGTGTGGCCTTAACCTTGGTCGNTATACCCTTTATACGCCCTGGCTAN 657 consensus_5442#1 ACCGTTTAACCCT---CAATCCCGTATCGAGAAGCAGTACTTTTGCTGCGTTTT---TAT 402 **** *** * * * * * *** ** * ** * ** consensus_5442#0 AANNACAGACAGGGTCATTAATTGTAACCAGANNCGCAANCCCGAATACTTTNAGCCAAC 717 consensus_5442#1 TGCTTCAAACAAGGG---TAAAAGTAACGAGATGCCC--TTTGCGTTACATTCGAGAAGC 457 ** *** ** *** ***** *** * * *** ** * * consensus_5442#0 AATCTCTCATGTAACTGTATATATCTCCNGGCTCCNTATTANACANGCTTCNTTACTTAA 777 consensus_5442#1 G-----TTACGTGCGAAATGAAATTCCCAAGCTGCCTTTTGGTTGCACTTTTAAGAGAAA 512 * * ** * ** ** *** * * ** *** ** consensus_5442#0 CTTTNCCCTTAACACACCTANACACACCCCCTNCCAACNTACCCTTCTTAACTTCCNAAA 837 consensus_5442#1 ---------TAATAGAACCAAAAATACAAATAG--GATTTAATGAGATTAAAG-CCTGTT 560 *** * * * * * * ** * ** **** ** consensus_5442#0 TCAACAAATCCGTTTCCAACAAATATAATANACACATATNANTCTACAATAACACATGAT 897 consensus_5442#1 CTGTCCAGTACTTTT--------TATTATATGGTCATGTTGAGGGCTAGTGAAAGACCAA 612 * * * * *** *** *** *** * * * * * * * consensus_5442#0 AATTCACAACATGTGTGTACCAAATGCATNNATGTCATGTGGATCACTGAAAAATAAGTG 957 consensus_5442#1 AACTTTGAAAAT---TGGGTTTGATG-ACCTCAGATAAGTTGATGATTAACGATTAAGTG 668 ** * ** ** ** *** * * * ** *** * * * * ****** consensus_5442#0 ACCCCC--GNTTTGATAANGTTTATNCACGCCGCCACCGTTANTCTTAGTCACGNGNCTN 1015 consensus_5442#1 TCGCTTTAAAACAACTAGGGGTTGACCTGTGCATCATTGTGACCAATAATTCGTTGTGTA 728 * * ** * ** * * ** ** * ** * * * consensus_5442#0 TCCNCGAAAACAGCGCGGTGGGGATTNGTCAAACAANCC--AGTTGCTATCT--GATATA 1071 consensus_5442#1 ATTACTCATAACATCCAGTACAAGTTTTTCCAAGAAGTTTGGGATGCTTTCTTGGGGTTT 788 * * * * ** ** ** ** ** * **** *** * * consensus_5442#0 AAGTCCACCAGTTTAGTANGGATGCACACAGACACCCATTNANTGGAAGTGCCACCATAG 1131 consensus_5442#1 TGTTTTGTTGATTTAATTTTGTTTTAAATTAAACTCACGATATTTTTACCATTTTCTTAA 848 * **** * * * * * * * * * * * ** consensus_5442#0 AGTTCTATCCGACGNCCGTCAGTGATGNTATCAACCCGAAAAANCGACGGGTATATCGTC 1191 consensus_5442#1 AATGTTT----AGATTCGTCCCTAACTGTATCGATT------------------------ 880 * * * * **** * * **** * consensus_5442#0 AGTAATGATGAAAAACCCGCTTTAGGTGGGNTAACCAAAGAATACAGCACCCCCCCCGTA 1251 consensus_5442#1 ------------------------------------------------------------ consensus_5442#0 TTGAGTATCGTAGGATATATAAA 1274 consensus_5442#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||