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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1228 fasta sequence
[CGAGGNGGCACGAGGTCGGAAGTGTTGTGCAGTGTCAACGTTTATACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTACAATTCCGTCCACGAGTATGGCGTGTGTTCGTGCATGGCCGGTTACTTCGCCGTGACAGACAGCAATAACACGCGTCGATGCTTGAGAGCGGCTACCGATATCGGTGACTACTGCCTACACAACGACCAGTGCCAGTACACGCTCAGCACGGGCAACTCGGAATGCCGCGACAACTCCTGCCAGTGCGTGGACGGTGCGCACTACGTCGAGCGGGAGAAGCGCTGCTACAAGACGAGCTACCTGGGCGAGTACTTGCCGGCTGACGAACAACTGCATCGGCAACGATACGTACTGCCGGGACGGGATCTGCGTGTGCACCCCGGGCAAGCATCCGAACGCGGACCGCAACCGCTGCCTGCACGATGCGAAGCTGGGCGACCAGTGCTTCCGGGACGAGGAATGCGTGACGGACAATTCGCGCTGCGCGCAGGAGATCTGTACGTGCCGCGTCAGTCACGTGCTGAACGAGCAGCGCAATCGGTGTTTGCCCATTGCGAGCAAAATTTACGACCTTTGCG-GGAAAACATACAGTGTTTGTACAACATTCCACACTCCCAGTGCCGCATCACCACCGGGACGGACGGTATAACGGCGGGCCGGTGCACCTGTGCCAGCCGATTCCACGAGGCAGGATTTAAATGTGTTTCATCGGTACACTTGAACGGGATTTGTGAGGTGAACGATAATTGCATCGATCGCGACACGGGCTGCTATCATGGACGGTGCCGCTGCATAGATCACATGATCGAGGTGGATGGCATTTGCTCCGGTGCTTCAACGTTCCGGCCAAACAGTTTAGCGTATGGGCTAGTACTTGTAACCGTGCTGGGTACACTGTACGGTATTAGCTGACCATGACGCAGCTGCGCACACAAACACCAAAAATTCTCTTTCCAAAACAATCTCCTTTAGTATCTAGAACTTAACATACTCAGTGAACGGCTTGAAAAAACGACCTTGCATTCCATCCTAATGTACTGGTAGCCTCACCTCAATCTCATGCTTGGACCAAAATGGAAAACCAATGAACCCTCGGGCGTGCTTAACACTGCTACTGATTGTCCAGTTTCGAACATGTTTTATATTAGTATGTGCTATTTAATGAATAAACACGTT]
[+] EMBL AL934857 [CGAGGNGGCACGAGGTCGGAAGTGTTGTGCAGTGTCAACGTTTATACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTACAATTCCGTCCACGAGTATGGCGTGTGTTCGTGCATGGCCGGTTACTTCGCCGTGACAGACAGCAATAACACGCGTCGATGCTTGAGAGCGGCTACCGATATCGGTGACTACTGCCTACACAACGACCAGTGCCAGTACACGCTCAGCACGGGCAACTCGGAATGCCGCGACAACTCCTGCCAGTGCGTGGACGGTGCGCACTACGTCGAGCGGGAGAAGCGCTGCTACAAGACGAGCTACCTGGGCGAGTACTTGCCGGCTGACGAACAACTGCATCGGCAACGATACGTACTGCCGGGACGGGATCTGCGTGTGCACCCCGGGCAAGCATCCGAACGCGGACCGCAACCGCTGCCTGCACGATGCGAAGCTGGGCGACCAGTGCTTCCGGGACGAGGAATGCGTGACGGACAATTCGCGCTGCGCGCAGGAGATCTGTACGTGCCGCGTCAGTCACGTGCTGAACGAGCAGCGCAATCGGTGTTTGCCCATTGCGAGCAAAATTTACGACCTTTGCGAGGAAAACATA ]
[+] EMBL BX612462 [ TTTGCCCATTGCGAGCAAAATTTACGACCTTTGCG GGAAAACATACAGTGTTTGTACAACATTCCACACTCCCAGTGCCGCATCACCACCGGGACGGACGGTATAACGGCGGGCCGGTGCACCTGTGCCAGCCGATTCCACGAGGCAGGATTTAAATGTGTTTCATCGGTACACTTGAACGGGATTTGTGAGGTGAACGATAATTGCATCGATCGCGACACGGGCTGCTATCATGGACGGTGCCGCTGCATAGATCACATGATCGAGGTGGATGGCATTTGCTCCGGTGCTTCAACGTTCCGGCCAAACAGTTTAGCGTATGGGCTAGTACTTGTAACCGTGCTGGGTACACTGTACGGTATTAGCTGACCATGACGCAGCTGCGCACACAAACACCAAAAATTCTCTTTCCAAAACAATCTCCTTTAGTATCTAGAACTTAACATACTCAGTGAACGGCTTGAAAAAACGACCTTGCATTCCATCCTAATGTACTGGTAGCCTCACCTCAATCTCATGCTTGGACCAAAATGGAAAACCAATGAACCCTCGGGCGTGCTTAACACTGCTACTGATTGTCCAGTTTCGAACATGTTTTATATT ]
[+] EMBL BX615311 [ CGAGCAAAATTTACGACCTTTGCG GGAAAACATACAGTGTTTGTACAACATTCCACACTCCCAGTGCCGCATCACCACCGGGACGGACGGTATAACGGCGGGCCGGTGCACCTGTGCCAGCCGATTCCACGAGGCAGGATTTAAATGTGTTTCATCGGTACACTTGAACGGGATTTGTGAGGTGAACGATAATTGCATCGATCGCGACACGGGCTGCTATCATGGACGGTGCCGCTGCATAGATCACATGATCGAGGTGGATGGCATTTGCTCCGGTGCTTCAACGTTCCGGCCAAACAGTTTAGCGTATGGGCTAGTACTTGTAACCGTGCTGGGTACACTGTACGGTATTAGCTGACCATGACGCAGCTGCGCACACAAACACCAAAAATTCTCTTTCCAAAACAATCTCCTTTAGTATCTAGAACTTAACATACTCAGTGAACGGCTTGAAAAAACGACCTTGCATTCCATCCTAATGTACTGGTAGCCTCACCTCAATCTCATGCTTGGACCAAAATGGAAAACCAATGAACCCTCGGGCGTGCTTAACACTGCTACTGATTGTCCAGTTTCGAACATGTTTTATATTAGTATGTGCTATTTAATGAATAAACACGTT]
consensusID : consensus_5444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence
[TANNGCAATAATACTGCTGGTGCGTACCATGTGCACCCTACCATACGCAACCGGTCGGCGGCGCAAACGAGCGCGGACGACGCCCGGAAGTCTGCGGTGGACGTCGGTGGGCGTTGCTGGGCCACTGTTGCTGNCTGCTGCCGCTGCTACTGACCATCATCGGAAGTGTTGTGCAGTGTCAAACGTTTATACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTANCAATTTC]
[+] EMBL BX619899 [TANNGCAATAATACTGCTGGTGCGTACCATGTGCACCCTACCATACGCAACCGGTCGGCGGCGCAAACGAGCGCGGACGACGCCCGGAAGTCTGCGGTGGACGTCGGTGGGCGTTGCTGGGCCACTGTTGCTGNCTGCTGCCGCTGCTACTGACCATCATCGGAAGTGTTGTGCAGTGTCAAACGTTTATACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTANCAATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5444#0 CGAGGNGGCACGAGGTCGGAAGTGTTGTGCAGTGTCAACGTTTATACGGCGAACGGCCAA 60
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTACAATTCCGT 120
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CCACGAGTATGGCGTGTGTTCGTGCATGGCCGGTTACTTCGCCGTGACAGACAGCAATAA 180
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CACGCGTCGATGCTTGAGAGCGGCTACCGATATCGGTGACTACTGCCTACACAACGACCA 240
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 GTGCCAGTACACGCTCAGCACGGGCAACTCGGAATGCCGCGACAACTCCTGCCAGTGCGT 300
consensus_5444#1 ----------------------------------TANNGCAATAA-TACTGCTGGTGCGT 25
* ** * ** * **** ******
consensus_5444#0 GGACGGTGCGCACTACGTCGAGCGGGAGAAGCGCTGCTACAAGACGAGCTACCTGGGCGA 360
consensus_5444#1 --ACCATGTGCACCCTACCATACG------------CAACCGGTCG-GCGGCGCAAACGA 70
** ** **** * ** * ** * ** ** * ***
consensus_5444#0 GTACTTGCCGGCTGACGAACAACTGCATCGG-CAACGATACGTACTGCCGGGACGGGATC 419
consensus_5444#1 GCGCG-GACGACGCCCGGAAGTCTGCGGTGGACGTCGGTGGGCGTTGCTGGGCCACTGTT 129
* * * ** * ** * **** ** * ** * * *** *** * *
consensus_5444#0 TGCGTGTGCACCCCGGGCAAGCATCCGAACGCGGACCGCAACCGCTGCCT-GCACGATGC 478
consensus_5444#1 GCTGNCTGCTGCCGCTGCTACTGACCATCATCGGAAGTGTTGTGCAGTGTCAAACGTTTA 189
* *** ** ** * ** **** ** * * *** *
consensus_5444#0 GAAGCTGGGCGACCAGTGCTTCCGGGACGAGGAATGCGTGACGGACA-ATTCGCGCTGCG 537
consensus_5444#1 TACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCG 249
* * * ** *** * ** * * *** *** ** * * * ** *****
consensus_5444#0 CGCAGGAGATCTGTACGTGCCGCGTCAGTCACGTGCTGAACGAGCAGCGCAATCGGTGTT 597
consensus_5444#1 AACGGTANCAATTTC--------------------------------------------- 264
* * * * *
consensus_5444#0 TGCCCATTGCGAGCAAAATTTACGACCTTTGCGGGAAAACATACAGTGTTTGTACAACAT 657
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 TCCACACTCCCAGTGCCGCATCACCACCGGGACGGACGGTATAACGGCGGGCCGGTGCAC 717
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CTGTGCCAGCCGATTCCACGAGGCAGGATTTAAATGTGTTTCATCGGTACACTTGAACGG 777
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 GATTTGTGAGGTGAACGATAATTGCATCGATCGCGACACGGGCTGCTATCATGGACGGTG 837
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CCGCTGCATAGATCACATGATCGAGGTGGATGGCATTTGCTCCGGTGCTTCAACGTTCCG 897
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 GCCAAACAGTTTAGCGTATGGGCTAGTACTTGTAACCGTGCTGGGTACACTGTACGGTAT 957
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 TAGCTGACCATGACGCAGCTGCGCACACAAACACCAAAAATTCTCTTTCCAAAACAATCT 1017
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CCTTTAGTATCTAGAACTTAACATACTCAGTGAACGGCTTGAAAAAACGACCTTGCATTC 1077
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 CATCCTAATGTACTGGTAGCCTCACCTCAATCTCATGCTTGGACCAAAATGGAAAACCAA 1137
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 TGAACCCTCGGGCGTGCTTAACACTGCTACTGATTGTCCAGTTTCGAACATGTTTTATAT 1197
consensus_5444#1 ------------------------------------------------------------
consensus_5444#0 TAGTATGTGCTATTTAATGAATAAACACGTT 1228
consensus_5444#1 -------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||