These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1228 fasta sequence [CGAGGNGGCACGAGGTCGGAAGTGTTGTGCAGTGTCAACGTTTATACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTACAATTCCGTCCACGAGTATGGCGTGTGTTCGTGCATGGCCGGTTACTTCGCCGTGACAGACAGCAATAACACGCGTCGATGCTTGAGAGCGGCTACCGATATCGGTGACTACTGCCTACACAACGACCAGTGCCAGTACACGCTCAGCACGGGCAACTCGGAATGCCGCGACAACTCCTGCCAGTGCGTGGACGGTGCGCACTACGTCGAGCGGGAGAAGCGCTGCTACAAGACGAGCTACCTGGGCGAGTACTTGCCGGCTGACGAACAACTGCATCGGCAACGATACGTACTGCCGGGACGGGATCTGCGTGTGCACCCCGGGCAAGCATCCGAACGCGGACCGCAACCGCTGCCTGCACGATGCGAAGCTGGGCGACCAGTGCTTCCGGGACGAGGAATGCGTGACGGACAATTCGCGCTGCGCGCAGGAGATCTGTACGTGCCGCGTCAGTCACGTGCTGAACGAGCAGCGCAATCGGTGTTTGCCCATTGCGAGCAAAATTTACGACCTTTGCG-GGAAAACATACAGTGTTTGTACAACATTCCACACTCCCAGTGCCGCATCACCACCGGGACGGACGGTATAACGGCGGGCCGGTGCACCTGTGCCAGCCGATTCCACGAGGCAGGATTTAAATGTGTTTCATCGGTACACTTGAACGGGATTTGTGAGGTGAACGATAATTGCATCGATCGCGACACGGGCTGCTATCATGGACGGTGCCGCTGCATAGATCACATGATCGAGGTGGATGGCATTTGCTCCGGTGCTTCAACGTTCCGGCCAAACAGTTTAGCGTATGGGCTAGTACTTGTAACCGTGCTGGGTACACTGTACGGTATTAGCTGACCATGACGCAGCTGCGCACACAAACACCAAAAATTCTCTTTCCAAAACAATCTCCTTTAGTATCTAGAACTTAACATACTCAGTGAACGGCTTGAAAAAACGACCTTGCATTCCATCCTAATGTACTGGTAGCCTCACCTCAATCTCATGCTTGGACCAAAATGGAAAACCAATGAACCCTCGGGCGTGCTTAACACTGCTACTGATTGTCCAGTTTCGAACATGTTTTATATTAGTATGTGCTATTTAATGAATAAACACGTT] [+] EMBL AL934857 [CGAGGNGGCACGAGGTCGGAAGTGTTGTGCAGTGTCAACGTTTATACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTACAATTCCGTCCACGAGTATGGCGTGTGTTCGTGCATGGCCGGTTACTTCGCCGTGACAGACAGCAATAACACGCGTCGATGCTTGAGAGCGGCTACCGATATCGGTGACTACTGCCTACACAACGACCAGTGCCAGTACACGCTCAGCACGGGCAACTCGGAATGCCGCGACAACTCCTGCCAGTGCGTGGACGGTGCGCACTACGTCGAGCGGGAGAAGCGCTGCTACAAGACGAGCTACCTGGGCGAGTACTTGCCGGCTGACGAACAACTGCATCGGCAACGATACGTACTGCCGGGACGGGATCTGCGTGTGCACCCCGGGCAAGCATCCGAACGCGGACCGCAACCGCTGCCTGCACGATGCGAAGCTGGGCGACCAGTGCTTCCGGGACGAGGAATGCGTGACGGACAATTCGCGCTGCGCGCAGGAGATCTGTACGTGCCGCGTCAGTCACGTGCTGAACGAGCAGCGCAATCGGTGTTTGCCCATTGCGAGCAAAATTTACGACCTTTGCGAGGAAAACATA ] [+] EMBL BX612462 [ TTTGCCCATTGCGAGCAAAATTTACGACCTTTGCG GGAAAACATACAGTGTTTGTACAACATTCCACACTCCCAGTGCCGCATCACCACCGGGACGGACGGTATAACGGCGGGCCGGTGCACCTGTGCCAGCCGATTCCACGAGGCAGGATTTAAATGTGTTTCATCGGTACACTTGAACGGGATTTGTGAGGTGAACGATAATTGCATCGATCGCGACACGGGCTGCTATCATGGACGGTGCCGCTGCATAGATCACATGATCGAGGTGGATGGCATTTGCTCCGGTGCTTCAACGTTCCGGCCAAACAGTTTAGCGTATGGGCTAGTACTTGTAACCGTGCTGGGTACACTGTACGGTATTAGCTGACCATGACGCAGCTGCGCACACAAACACCAAAAATTCTCTTTCCAAAACAATCTCCTTTAGTATCTAGAACTTAACATACTCAGTGAACGGCTTGAAAAAACGACCTTGCATTCCATCCTAATGTACTGGTAGCCTCACCTCAATCTCATGCTTGGACCAAAATGGAAAACCAATGAACCCTCGGGCGTGCTTAACACTGCTACTGATTGTCCAGTTTCGAACATGTTTTATATT ] [+] EMBL BX615311 [ CGAGCAAAATTTACGACCTTTGCG GGAAAACATACAGTGTTTGTACAACATTCCACACTCCCAGTGCCGCATCACCACCGGGACGGACGGTATAACGGCGGGCCGGTGCACCTGTGCCAGCCGATTCCACGAGGCAGGATTTAAATGTGTTTCATCGGTACACTTGAACGGGATTTGTGAGGTGAACGATAATTGCATCGATCGCGACACGGGCTGCTATCATGGACGGTGCCGCTGCATAGATCACATGATCGAGGTGGATGGCATTTGCTCCGGTGCTTCAACGTTCCGGCCAAACAGTTTAGCGTATGGGCTAGTACTTGTAACCGTGCTGGGTACACTGTACGGTATTAGCTGACCATGACGCAGCTGCGCACACAAACACCAAAAATTCTCTTTCCAAAACAATCTCCTTTAGTATCTAGAACTTAACATACTCAGTGAACGGCTTGAAAAAACGACCTTGCATTCCATCCTAATGTACTGGTAGCCTCACCTCAATCTCATGCTTGGACCAAAATGGAAAACCAATGAACCCTCGGGCGTGCTTAACACTGCTACTGATTGTCCAGTTTCGAACATGTTTTATATTAGTATGTGCTATTTAATGAATAAACACGTT] consensusID : consensus_5444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 264 fasta sequence [TANNGCAATAATACTGCTGGTGCGTACCATGTGCACCCTACCATACGCAACCGGTCGGCGGCGCAAACGAGCGCGGACGACGCCCGGAAGTCTGCGGTGGACGTCGGTGGGCGTTGCTGGGCCACTGTTGCTGNCTGCTGCCGCTGCTACTGACCATCATCGGAAGTGTTGTGCAGTGTCAAACGTTTATACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTANCAATTTC] [+] EMBL BX619899 [TANNGCAATAATACTGCTGGTGCGTACCATGTGCACCCTACCATACGCAACCGGTCGGCGGCGCAAACGAGCGCGGACGACGCCCGGAAGTCTGCGGTGGACGTCGGTGGGCGTTGCTGGGCCACTGTTGCTGNCTGCTGCCGCTGCTACTGACCATCATCGGAAGTGTTGTGCAGTGTCAAACGTTTATACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTANCAATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5444#0 CGAGGNGGCACGAGGTCGGAAGTGTTGTGCAGTGTCAACGTTTATACGGCGAACGGCCAA 60 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCGAACGGTACAATTCCGT 120 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CCACGAGTATGGCGTGTGTTCGTGCATGGCCGGTTACTTCGCCGTGACAGACAGCAATAA 180 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CACGCGTCGATGCTTGAGAGCGGCTACCGATATCGGTGACTACTGCCTACACAACGACCA 240 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 GTGCCAGTACACGCTCAGCACGGGCAACTCGGAATGCCGCGACAACTCCTGCCAGTGCGT 300 consensus_5444#1 ----------------------------------TANNGCAATAA-TACTGCTGGTGCGT 25 * ** * ** * **** ****** consensus_5444#0 GGACGGTGCGCACTACGTCGAGCGGGAGAAGCGCTGCTACAAGACGAGCTACCTGGGCGA 360 consensus_5444#1 --ACCATGTGCACCCTACCATACG------------CAACCGGTCG-GCGGCGCAAACGA 70 ** ** **** * ** * ** * ** ** * *** consensus_5444#0 GTACTTGCCGGCTGACGAACAACTGCATCGG-CAACGATACGTACTGCCGGGACGGGATC 419 consensus_5444#1 GCGCG-GACGACGCCCGGAAGTCTGCGGTGGACGTCGGTGGGCGTTGCTGGGCCACTGTT 129 * * * ** * ** * **** ** * ** * * *** *** * * consensus_5444#0 TGCGTGTGCACCCCGGGCAAGCATCCGAACGCGGACCGCAACCGCTGCCT-GCACGATGC 478 consensus_5444#1 GCTGNCTGCTGCCGCTGCTACTGACCATCATCGGAAGTGTTGTGCAGTGTCAAACGTTTA 189 * *** ** ** * ** **** ** * * *** * consensus_5444#0 GAAGCTGGGCGACCAGTGCTTCCGGGACGAGGAATGCGTGACGGACA-ATTCGCGCTGCG 537 consensus_5444#1 TACGGCGAACGGCCAACGTTTGCCGCACGGACGATGAATGTCCGCTGCAGGCGTACTGCG 249 * * * ** *** * ** * * *** *** ** * * * ** ***** consensus_5444#0 CGCAGGAGATCTGTACGTGCCGCGTCAGTCACGTGCTGAACGAGCAGCGCAATCGGTGTT 597 consensus_5444#1 AACGGTANCAATTTC--------------------------------------------- 264 * * * * * consensus_5444#0 TGCCCATTGCGAGCAAAATTTACGACCTTTGCGGGAAAACATACAGTGTTTGTACAACAT 657 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 TCCACACTCCCAGTGCCGCATCACCACCGGGACGGACGGTATAACGGCGGGCCGGTGCAC 717 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CTGTGCCAGCCGATTCCACGAGGCAGGATTTAAATGTGTTTCATCGGTACACTTGAACGG 777 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 GATTTGTGAGGTGAACGATAATTGCATCGATCGCGACACGGGCTGCTATCATGGACGGTG 837 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CCGCTGCATAGATCACATGATCGAGGTGGATGGCATTTGCTCCGGTGCTTCAACGTTCCG 897 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 GCCAAACAGTTTAGCGTATGGGCTAGTACTTGTAACCGTGCTGGGTACACTGTACGGTAT 957 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 TAGCTGACCATGACGCAGCTGCGCACACAAACACCAAAAATTCTCTTTCCAAAACAATCT 1017 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CCTTTAGTATCTAGAACTTAACATACTCAGTGAACGGCTTGAAAAAACGACCTTGCATTC 1077 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 CATCCTAATGTACTGGTAGCCTCACCTCAATCTCATGCTTGGACCAAAATGGAAAACCAA 1137 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 TGAACCCTCGGGCGTGCTTAACACTGCTACTGATTGTCCAGTTTCGAACATGTTTTATAT 1197 consensus_5444#1 ------------------------------------------------------------ consensus_5444#0 TAGTATGTGCTATTTAATGAATAAACACGTT 1228 consensus_5444#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||