These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1527 fasta sequence [TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCATCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATATTAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTTAAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCAAATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAAACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTATATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAGAAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATTTGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAAATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGTAAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATATACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAGTCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGAGCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGTAGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTGAGCGGCGGTACATTAGCGTTTAATTATTAT] [+] EMBL BM633994 [TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCATCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATATTAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTTAAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACC ] [+] EMBL BM574982 [ ccgAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCAAATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAAACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTATATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAGAAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAA ] [+] EMBL BM625305 [ ccgCAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATCAGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGGAGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATTTGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAAATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGTAAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATATACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAGTCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGAGCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGTAGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTGAGCGGCGGTACATTAGCGTTTAATTATTAT] consensusID : consensus_5448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 537 fasta sequence [CCGAAAATAAACGAAAACTCAAATCTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC] [+] EMBL BM610770 [CCGAAAATAAACGAAAACTCAAATCTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGATTTGGATCAGAAATAATGCACACACTAACATACACACACACACCCACACACATTTTTAGGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTGTAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTCGGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATGCGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTTCAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCCGGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGAGGGCGAGATACGATAGAAAAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5448#0 TCCTGTGGCTTTCTGTGGGTGTTGCAAAGGCGGATGGTGGGGCAAATTTAATGTCAACCA 60 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 TCTCAACCATCTGTGAAAAGAAAACGAGAGTGTCGCGCATTTATCAAAATTCAAAAATAT 120 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 TAACTCTAAATTGAACACCGATTAAATTTAATGGAACACCACCATGGTGGGTGGGTGGTT 180 consensus_5448#1 ----------------------------------------CCGAAAATAAACGAAAACTC 20 * * * * * consensus_5448#0 AAGCGATTAAAAAAAAAACAAACACACACACACACTCGTTTCGGTAACTATTGGCTGTGA 240 consensus_5448#1 AAAT--CTAACGCAAGGAAAAAAACACACACACACTCGTTTCGGTAACTATTGGCTGTGA 78 ** *** ** * *** ************************************* consensus_5448#0 TTTGGATCAGAAATAATGCACACACTAACATACACATACACACACCCACACACATTTTTA 300 consensus_5448#1 TTTGGATCAGAAATAATGCACACACTAACATACACA--CACACACCCACACACATTTTTA 136 ************************************ ********************** consensus_5448#0 GGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGGTG 360 consensus_5448#1 GGCGAAACGTTAAGAAATTGTATTAAGAGTTTTCTACCGCAGCGCGGAACAGGATGGCTG 196 ********************************************************* ** consensus_5448#0 TAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTC 420 consensus_5448#1 TAGAAAGCGCGTAACAGGACACCGTTAGTTTAAGTATGAAATGTTCATTTTCGGTTTTTC 256 ************************************************************ consensus_5448#0 GGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATG 480 consensus_5448#1 GGTTTTCGGCCAGCACCACTTGCTTGACGAGAGCAGCAAAAGACATTCGTTTAGGTAATG 316 ************************************************************ consensus_5448#0 CGAGAAGGAAACAAAGAAGAAAAAAAACACACACACAAACACGGAAAGGAAACGAAACTT 540 consensus_5448#1 CGAGAAGGAAACAAAGAAGAAAAAAAAAACACACACAAACACGGAAAGGAAACGAAACTT 376 *************************** ******************************** consensus_5448#0 CAAAATTTACCAAAAAAAAAAAA---CAAATTATATATCTGTCTCTTTAACTCTTCGGCC 597 consensus_5448#1 CAAAATTTACCAAAAAAAAAAAAAAACAAATTATATATCTGTCTCTTTAACTCTTCGGCC 436 *********************** ********************************** consensus_5448#0 GATCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGGGGGAGGGCGAGATACGATAGAA 657 consensus_5448#1 GGTCTCTTCCTACCGTCTCCGTTCCTTCCACGCTGGGG--GAGGGCGAGATACGATAGAA 494 * ************************************ ******************** consensus_5448#0 AAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGCAGCAGCAGCAGCAGTCA 717 consensus_5448#1 AAGACGGAAGGCAGCTGCAGCAGTCAAATTCCATCAAGACAGC----------------- 537 ******************************************* consensus_5448#0 AATTCCAACTAGATTTTGAGAGAGGGAGAGAGACATTGCAAAGGAGAGCTAAATTTTTAA 777 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 ACCCAAATCAAACCAAATTTACAATCGCAAATTTCGATACGCTTCTTTTTGGCTTTACTA 837 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 TATTGGATAATTAGGCGAGAGGGGGAGGCAAAATTTTTTGTAACAAAAAGAAAGGGAGAG 897 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 AAGAAAAAAGAAACAAAATATGAAACTCATTGGATCTCAGTATGATAACGGCATGTGATC 957 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 AGTTTTGTTTTTCTTTTGAAAACGAAGATATTAAGCAGTATCGTAGACATTTTCATAAGG 1017 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 AGGCGGGGCGTGTATTTAGGCATAAAGGAAACATACGAACTAAATTCTAAATTTAAAATT 1077 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 TGCGGTTAAATTTTTACCTTTTACCTGTTAATCGTTTTTTTATTTGTTTTCGTTTTGGAA 1137 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 ATACTTCTTTTGGGCGTCACAACACACTCTCAAACAAGGGAATTTATGGCGTGGTTGAGT 1197 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 AAGCAATGAATAAGAGTGCAGAGGAGCAAATTAAAAAGAGAGAGAGAGAGAGACATATAT 1257 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 ACTAAACACACCAATTGTGATTCTTTCGGCCATATTTTAAAAACGTTTTCGTTTTCTTAG 1317 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 TCAAAATTTGTTAACGAATAGAAAAAAAAATTGATACCAAATTATGAACGGGGCGCGGGA 1377 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 GCGTCCCCGCCCCGGGCGGCAATCCCAAATGTGATCCTCAAGCAAGTGATTCAAAATTGT 1437 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 AGCGCGCTCGCGTGTGTCCTGTTATTTGGGTTTAAGAAAGTTCGTAGCGAGCGTGTAGTG 1497 consensus_5448#1 ------------------------------------------------------------ consensus_5448#0 AGCGGCGGTACATTAGCGTTTAATTATTAT 1527 consensus_5448#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||