cluster # 5461

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Anopheles gambiae
cluster # 5461 cluster # 5461 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5461#0 length = 811 sequences # 3

consensus_5461#1 length = 436 sequences # 1

consensusID : consensus_5461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 811
fasta sequence

                              [CCGGCTGCGCAAGCTTCAGCACGAGAACGAGACGATCACTTTATCGTGTGTTTTGTTGTTGTTGTTGTTGTTATGTTCTACATACCACTGGAACACGTTGTAACGAGTCATAACGCGTTCCCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCGATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGTTGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTATTGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTCCGGGCGATGCGCAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTCGCCTCGACCGAGATGTTCCCGGGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCCGATGGGTACGTGACGATGAACTTTACGTACGTGTTTTTGGACGACCCGCTCGCCACCTTCCAGCAGGGCAACATTACCTGGATCATACCGAACTACGGCCAGCCGGCGCACTGGGTGCACGCAGAGAGTAGCTATGAAGAGATCTACAACACCT]

[+] EMBL BM626561             [CCGGCTGCGCAAGCTTCAGCACGAGAACGAGACGATCACTTTATCGTGTGTTTTGTTGTTGTTGTTGTTGTTATGTTCTACATACCACTGGAACACGTTGTAACGAGTCATAACGCGTTCAGTGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCGATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGTTGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTATTGTCGTTCGGTCGGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTCCGGGCGATGCGCAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTCGCCTCGACCGAGATGTTCCCGGGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCC                                                                                                                                                          ]
[+] EMBL BM575732             [                                                                                                                        CCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCGATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGTTGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTATTGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTCCGGGCGATGCGTAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTCGCCTCGACCGAGATGTTCCC GGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCCGATGGGTACGTGACGATGAACTTTACGTACGTGTTTTTGGACGACCCGCTCGCCACCTTCCAGCAGGGCAACATTACCTGGATCATACCGAACTACGGCCAGCCGGCGCACTGGGTGCACGCAGAGAGTAGCTATGAAGAGATCTACAACACCT]
[+] EMBL BM612170             [                                                                                                                        CCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCGATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGTTGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTATTGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGA                                                                                                                                                                                                                                                                                                                                                                                                                                            ]




>consensus_5461#0
CCGGCTGCGCAAGCTTCAGCACGAGAACGAGACGATCACTTTATCGTGTGTTTTGTTGTT
GTTGTTGTTGTTATGTTCTACATACCACTGGAACACGTTGTAACGAGTCATAACGCGTTC
CCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCG
ATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGT
TGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTAT
TGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCC
CACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGC
ACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACG
ATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTCCGGG
CGATGCGCAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTCG
CCTCGACCGAGATGTTCCCGGGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCCGAT
GGGTACGTGACGATGAACTTTACGTACGTGTTTTTGGACGACCCGCTCGCCACCTTCCAG
CAGGGCAACATTACCTGGATCATACCGAACTACGGCCAGCCGGCGCACTGGGTGCACGCA
GAGAGTAGCTATGAAGAGATCTACAACACCT

consensusID : consensus_5461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 436
fasta sequence

                              [TTGGGCTTTTGGATTTCACAATGAAAGGAGGAGAGTTGCGCACATGGTGGGTTGCTTTGGGGCACCGCATCGATTGTGGAGCTGCGCGCCGCACGATCTGCAATTAGATTAGTAATTGAATACTTTTGGCTGACGCAAATCGGCCCAAGATTGTTACATCTACTTGCATCTACTTGCAGCGGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTGGTTGGCCCCAAGGGCCTGTGTACTGGCATCGT]

[-] EMBL BX611587             [TTGGGCTTTTGGATTTCACAATGAAAGGAGGAGAGTTGCGCACATGGTGGGTTGCTTTGGGGCACCGCATCGATTGTGGAGCTGCGCGCCGCACGATCTGCAATTAGATTAGTAATTGAATACTTTTGGCTGACGCAAATCGGCCCAAGATTGTTACATCTACTTGCATCTACTTGCAGCGGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCCCACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTGGTTGGCCCCAAGGGCCTGTGTACTGGCATCGT]




>consensus_5461#1
TTGGGCTTTTGGATTTCACAATGAAAGGAGGAGAGTTGCGCACATGGTGGGTTGCTTTGG
GGCACCGCATCGATTGTGGAGCTGCGCGCCGCACGATCTGCAATTAGATTAGTAATTGAA
TACTTTTGGCTGACGCAAATCGGCCCAAGATTGTTACATCTACTTGCATCTACTTGCAGC
GGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCCCACACACACACA
ACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGCACGCCCGGAGCT
GCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACGATGGGGCTGGGC
AGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTGGTTGGCCCCAAGGGCC
TGTGTACTGGCATCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5461#0      CCGGCTGCGCAAGCTTCAGCACGAGAACGAGACGATCACTTTATCGTGTGTTTTGTTGTT 60
consensus_5461#1      ------------------------------------------------------------
                                                                                  

consensus_5461#0      GTTGTTGTTGTTATGTTCTACATACCACTGGAACACGTTGTAACGAGTCATAACGCGTTC 120
consensus_5461#1      ----------------------------------------------------TTGGGCTT 8
                                                                            * * * 

consensus_5461#0      CCGGTTGCGGCTAGCGAAGCTCTTGTGAGTAGCACGGATTTTTAAGTGTTGATCTCACCG 180
consensus_5461#1      TTGGATTTCACAATGAAAGGAG--GAGAGTTGCGCACATGGTGGGTTGCT--TTGGGGCA 64
                        ** *    * *   ***     * **** ** *  **  *    ** *  *     * 

consensus_5461#0      ATTAATCAGACATCCATCAACCTGTGGCAAGAACAAATTTACAATCAGAAAAGAAATAGT 240
consensus_5461#1      CCGCATCGATTGTGGAGCTGCGCGCCGCACGA-----TCTGCAATTAGATTAGTAATTG- 118
                          ***     *  * *  *  *  *** **     * * **** ***  ** *** * 

consensus_5461#0      TGCTGTTTCACTTGCTACTAGACATTGCGTCCTAGAGAACTCTGTTTGCACGTTGATTAT 300
consensus_5461#1      -AATACTT--TTGGCTGACGCAAATCG-GCCCAAGATTGTTACATCTACTTGCATCTACT 174
                         *  **   * ***     * ** * * ** ***    *   * * *  *    *  *

consensus_5461#0      TGTCGTTCGGTCGGAACCAGCGGCCCGAGCGACTACACCAAGGTTCCTACTCAGCACTCC 360
consensus_5461#1      TGCAG------CGGAACCAGTGGCCCGAGCGACTACACCCAGGTTCCTACTCAGCACTCC 228
                      **  *      ********* ****************** ********************

consensus_5461#0      CACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGC 420
consensus_5461#1      CACACACACACAACCCCAGACGAGTTAGCGGGCGGGACAGTATGGTTCGTGTGACGCTGC 288
                      ************************************************************

consensus_5461#0      ACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACG 480
consensus_5461#1      ACGCCCGGAGCTGCTGCCTGCTGGTGGCACTGCTGCTGCTCCTCCTCCTGCTCGTCGACG 348
                      ************************************************************

consensus_5461#0      ATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTC-CGG 539
consensus_5461#1      ATGGGGCTGGGCAGATACCGCGACGACGGCCCCGCAACGACCGCTGCCCGAAGGTGGTTG 408
                      *******************************************************    *

consensus_5461#0      GCGATGCGCAACTTCGGGCTGAACGCGATGATGGGCTCCTGGTACGTGATACAGTACTTC 599
consensus_5461#1      GCCCCAAGGGCCTGTGTACTGGCATCGT-------------------------------- 436
                      **     *   **  *  ***    **                                 

consensus_5461#0      GCCTCGACCGAGATGTTCCCGGGAGTACGGGTGTATGCGCAGCTCGTTCGTCACCTCCGA 659
consensus_5461#1      ------------------------------------------------------------
                                                                                  

consensus_5461#0      TGGGTACGTGACGATGAACTTTACGTACGTGTTTTTGGACGACCCGCTCGCCACCTTCCA 719
consensus_5461#1      ------------------------------------------------------------
                                                                                  

consensus_5461#0      GCAGGGCAACATTACCTGGATCATACCGAACTACGGCCAGCCGGCGCACTGGGTGCACGC 779
consensus_5461#1      ------------------------------------------------------------
                                                                                  

consensus_5461#0      AGAGAGTAGCTATGAAGAGATCTACAACACCT 811
consensus_5461#1      --------------------------------