These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1017 fasta sequence [TGGCAGGCAGGAGGGAAGCGATAGAAGGCGATTGCTCGAGTGTGTGGCAGCTGCAAACACAAACAACAAGGACATCGTAAAAAAAGGACCGCCAATGAATACCAGCAATTACGAGGAGCTGGGTGTGATTGGTACAGGAGCTTACGGTACCGTTTACAGGGCACGGGATCTGAAGAATGCTGGTACAATCGTCGCACTGAAGAAGGTGCGCGTCGCACTGACCGAAGATGGCGTCCCGATGTCGACGTTGCGGGAAATTTTCATGCTCAAACAACTCGACACCTTTGGGCATCCGAATGTGGTGAAACTCCTAGATGTGTGTCAAGGGCAACGGCTANAGCGCGAAGGGCAGTTGGTGCTGTTTCTAGTGTTCGAGCATCTGGATCACGATCTGGATGAGTACATTAAGCGTCTACCACCGAAAGGAATGCCTCCGGCCACTATACAGCGACTATCGCGCGAAATGCTTACCGGCATCGACTTCCTGCACTCGCACCGCATCATCCACCGGGACTTGAAGCCGCAGAATCTCCTCATCTCGAGCGACGGCCACCTGAAGCTGGCCGACTTTGGGCTCGCCAAAACGTACGACTTTGAGATGAAGCTAACGACGGTTGTGGTGACGCTTTGGTACCGTGCTCCGGAAGTCCTGCTTGGCGAAGCGTACAACAGNTCGGTCGACATCTGGAGTGCGGGCTGTATCATTGCGGAAATGTTCCAGCGGCAAGCGTTGTTCCCGGGCACGGCCGAGGGCAATCAGCTGGAACGAATATTCGAATTAACTGGCCGCCCATCGGAAGCGCAGTGGCCGAGGGGCATTTCGATCGTGCGGGAAAACTTCCGCTCCACCCAGCGGCGGGAACCGCGCGAATTCTGNCCGAAGATGTGCGACAATGCGAACGATCTCCTAAAGAGCATGCTCGCCTTCAGCCGGCACGAACGTCCGTCCGCAAGGNAGTGCCTTAACCATGCCTACTTCAACAGGAACCGATGCCGACGTAAGGGAGCATCNCCTTA] [+] EMBL BX623960 [TGGCAGGCAGGAGGGAAGCGATAGAAGGCGATTGCTCGAGTGTGTGGCAGCTGCAAACACAAACAACAAGGACATCGTAAAAAAAGGACCGCCAATGAATACCAGCAATTACGAGGAGCTGGGTGTGATTGGTACAGGAGCTTACGGTACCGTTTACAGGGCACGGGATCTGAAGAATGCTGGTACAATCGTCGCACTGAAGAAGGTGCGCGTCGCACTGACCGAAGATGGCGTCCCGATGTCGACGTTGCGGGAAATTTTCATGCTCAAACAACTCGACACCTTTGGGCATCCGAATGTGGTGAAACTCCTAGATGTGTGTCAAGGGCAACGGCTANAGCGCGAAGGGCAGTTGGTGCTGTTTCTAGTGTTCGAGCATCTGGATCACGATCTGGATGAGTACATTAAGCGTCTACCACCGAAAGGAATGCCTCCGGCCACTATACAGCGACTATCGCGCGAAATGCTTACCGGCATCGACTTCCTGCACTCGCACCGCATCATCCACCGGGACTTGAAGCCGCAGAATCTCCTCATCTCGAGCGACGGCCACCTGAAGCTGGCCGACTTTGGGCTCGCCAAAACGTACGACTTTGAGATGAAGCTAACGACGGTTGTGGTGACGCTTTGGTACCGTGCTCCGGAAGTCCTGCTTGGCGAAGCGTACAACAGNTCGGTCGACATCTGGAGTGCGGGCTGTATCATTGCGGAAATGTTCCAGCGGCAAGCGTTGT ] [+] EMBL BX625194 [ CTTACGGTACCGTTTACAGGGCACGGGATCTGAAGAATGCTGGTACAATCGTCGCACTGAAGAAGGTGCGCGTCGCACTGACCGAAGATGGCGTCCCGATGTCGACGTTGCGGGAAATTTTCATGCTCAAACAACTCGACACCTTTGGGCATCCGAATGTGGTGAAACTCCTAGATGTGTGTCAAGGGCAACGGCTAGAGCGCGAAGGGCAGTTGGTGCTGTTTCTAGTGTTCGAGCATCTGGATCACGATCTGGATGAGTACATTAAGCGTCTACCACCGAAAGGAATGCCTCCGGCCACTATACAGCGACTATCGCGCGAAATGCTTACCGGCATCGACTTCCTGCACTCGCACCGCATCATCCACCGGGACTTGAAGCCGCAGAATCTCCTCATCTCGAGCGACGGCCACCTGAAGCTGGCCGACTTTGGGCTCGCCAAAACGTACGACTTTGAGATGAAGCTAACGACGGTTGTGGTGACGCTTTGGTACCGTGCTCCGGAAGTCCTGCTTGGCGAAGCGTACAACAGCTCGGTCGACATCTGGAGTGCGGGCTGTATCATTGCGGAAATGTTCCAGCGGCAAGCGTTGTTCCCGGGCACGGCCGAGGGCAATCAGCTGGAACGAATATTCGAATTAACTGGCCGCCCATCGGAAGCGCAGTGGCCGAGGGGCATTTCGATCGTGCGGGAAAACTTCCGCTCCACCCAGCGGCGGGAACCGCGCGAATTCTGNCCGAAGATGTGCGACAATGCGAACGATCTCCTAAAGAGCATGCTCGCCTTCAGCCGGCACGAACGTCCGTCCGCAAGGNAGTGCCTTAACCATGCCTACTTCAACAGGAACCGATGCCGACGTAAGGGAGCATCNCCTTA] consensusID : consensus_5465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence [CATGCTGCCCTTTTTTTTTANTTTTTTTCTGGTTTGAACTGCTGCGTTTTTTTTATTACTGTATACATATATAATTAAAATAATTCATAAAATTCACTGCACTGTATACTTTTGCCTTCCTTACACAGCTAAAGCGGGCACTGTATAAAAAGACACGCAAACACGAACGAACGAGTTCAATTTAAAGCAGCTTATATAAGGGGGGTCACAGAGCGCGACAGCTTGACCTAATTCTAGCAAACAATTATAATCATTGTAATTGTAATGTTCAAATTATAATTACAATTATTATAATTATCAAAGGTAATAATAAATGAAAATAAGTATAATCAAAACTAATTCTATTTCTTAAAACAATATCTCTGAAGTCTCTGAAATCCAAAACAAGAAAATGAGCGAAAAATAAATGACACCAAAGTTTTCACTAACCCAACTACACGCCTTTCTCCTATTTCCTTCTTGTTTCCCACTGCTTTCTCCCCATTTTTTGCTATCTCCCTCTGTTTGCCTTACCTAACAATATCGAGCAAAAAAAAACGAACAATATGATGGCTGTGACTGTGTATGGAGGGAGGGAAAGAGACAGGCAGCAATACCAAAATATTCATATCATAAAGATCGTTGCCTACTCACTAGTAGTTGTAGCTAGTAGNTAGTACACAAATTCGTTGGCAGTCCGGGTTACNGGTAATTTCACTANTCTAGTACTGTAATGCCTCGTGCCGAATTCTNGGCTCGCAGGGCAATCCCTATNGGAGTCGTTTAAATCAN] [+] EMBL BX466704 [CATGCTGCCCTTTTTTTTTANTTTTTTTCTGGTTTGAACTGCTGCGTTTTTTTTATTACTGTATACATATATAATTAAAATAATTCATAAAATTCACTGCACTGTATACTTTTGCCTTCCTTACACAGCTAAAGCGGGCACTGTATAAAAAGACACGCAAACACGAACGAACGAGTTCAATTTAAAGCAGCTTATATAAGGGGGGTCACAGAGCGCGACAGCTTGACCTAATTCTAGCAAACAATTATAATCATTGTAATTGTAATGTTCAAATTATAATTACAATTATTATAATTATCAAAGGTAATAATAAATGAAAATAAGTATAATCAAAACTAATTCTATTTCTTAAAACAATATCTCTGAAGTCTCTGAAATCCAAAACAAGAAAATGAGCGAAAAATAAATGACACCAAAGTTTTCACTAACCCAACTACACGCCTTTCTCCTATTTCCTTCTTGTTTCCCACTGCTTTCTCCCCATTTTTTGCTATCTCCCTCTGTTTGCCTTACCTAACAATATCGAGCAAAAAAAAACGAACAATATGATGGCTGTGACTGTGTATGGAGGGAGGGAAAGAGACAGGCAGCAATACCAAAATATTCATATCATAAAGATCGTTGCCTACTCACTAGTAGTTGTAGCTAGTAGNTAGTACACAAATTCGTTGGCAGTCCGGGTTACNGGTAATTTCACTANTCTAGTACTGTAATGCCTCGTGCCGAATTCTNGGCTCGCAGGGCAATCCCTATNGGAGTCGTTTAAATCAN] consensusID : consensus_5465#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [CCGCCGCAAGGCAGTGCCTTAACCATGCCTACTTCAAACAGGAACCGATGCCGACGTAAGGGGCTCCCACTACCTCCCCTCAGCATCGCCTTACCGGTAGGTAAATCGCACACACACACAAACGCAAACAAACTATCACATGGATAATAATGATAAGGATATACAACGAAACGGTAGGCGTAAAATCGACACCGTCAACACAAAAACACCTTCGGGGGGGAAGAAGGCAAGAACGCTTCTTCTGCCTACATTACAGTACTAGAGTTAGTGAAATTACCAGTAAACCCGGACTGCCAACGAAATTGTGTACTACTACTACTACTACTACTACTATTGCTAGTAGTAGCAACGATCTTATGATATGAATATTTTGGTATTGCTGCCTGTCTCTTTCCCTCCCTCCATACACAGTCACAGCCATCATATGTTCGTTTTTTTTGCTCGATATTGTTAGGTAAGGCAAACAGAGGGACACAGCAAACAATGGGGAGAAAGCAGAGGGAAACAAGAAGGAAATCAGAGCTAGGCGTGTAGTTGGGTTAGTGAAAACTTTGGTGTCATGTATTTTTCACTCATTTTCTTGTTTTGGATTTCAGAGACTTCAGAGATATTTTTTTTTAAGAAATAGAATTAGTCTTGATTATACTTATTTTCATTT] [+] EMBL BM639783 [CCGCCGCAAGGCAGTGCCTTAACCATGCCTACTTCAAACAGGAACCGATGCCGACGTAAGGGGCTCCCACTACCTCCCCTCAGCATCGCCTTACCGGTAGGTAAATCGCACACACACACAAACGCAAACAAACTATCACATGGATAATAATGATAAGGATATACAACGAAACGGTAGGCGTAAAATCGACACCGTCAACACAAAAACACCTTCGGGGGGGAAGAAGGCAAGAACGCTTCTTCTGCCTACATTACAGTACTAGAGTTAGTGAAATTACCAGTAAACCCGGACTGCCAACGAAATTGTGTACTACTACTACTACTACTACTACTATTGCTAGTAGTAGCAACGATCTTATGATATGAATATTTTGGTATTGCTGCCTGTCTCTTTCCCTCCCTCCATACACAGTCACAGCCATCATATGTTCGTTTTTTTTGCTCGATATTGTTAGGTAAGGCAAACAGAGGGACACAGCAAACAATGGGGAGAAAGCAGAGGGAAACAAGAAGGAAATCAGAGCTAGGCGTGTAGTTGGGTTAGTGAAAACTTTGGTGTCATGTATTTTTCACTCATTTTCTTGTTTTGGATTTCAGAGACTTCAGAGATATTTTTTTTTAAGAAATAGAATTAGTCTTGATTATACTTATTTTCATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5465#0 --------TGGCAGGCAGGAGGGAAGCGATAGAAGGCGATTGCTCGAGTGTGTGGCAGCT 52 consensus_5465#2 -------------------------CCGCCGCAAGGCAGTGCCTTAACCATGC--CTACT 33 consensus_5465#1 CATGCTGCCCTTTTTTTTTANTTTTTTTCTGGTTTGAACTGCTGCGTTTTTTTTATTACT 60 * * * ** consensus_5465#0 GCAAACACAAACAACAAGGACATCGTAAAAAAAGGACCGCCAATGAATACCAGCAATTAC 112 consensus_5465#2 TCAAACAGGAAC--CGATGCCGACGTA----AGGGGCTCCCACTACCTCCCCTCAGCATC 87 consensus_5465#1 GTATACATATATAATTAAAATAATTCATAAAATTCACTGC-ACTGTATACTTTTGCCTTC 119 * *** * * * * * * * * * * * consensus_5465#0 ---GAGGAGCTGG-GTGTGATTGGTACAGGAGCTTACGGTACCGTTTACAGGGCACGGGA 168 consensus_5465#2 ---GCCTTACCGGTAGGTAAATCGCACA----CACACACAAACGCAAACAAACTAT--CA 138 consensus_5465#1 CTTACACAGCTAAAGCGGGCACTGTATAAAAAGACACGCAAACACGAACGAACGAGTTCA 179 * * * * * ** * * ** * * consensus_5465#0 TCTGAAGAATGCTGGTACAATCGTCGCACTGAAGAAGGTGCGCGTCGCACTGACC-GAAG 227 consensus_5465#2 CATGGATAATAATGATAAGGATAT-ACAACGAA-ACGGTAGGCGTAAAATCGAC--ACCG 194 consensus_5465#1 ATTTAAAGCAGCTTATATAAGGGG------GGTCACAGAGCGCGACAGCTTGACCTAATT 233 * * * ** * * * *** *** consensus_5465#0 ATGGCGTCCCGATGTCGACGTTGCGG--GAAATTTTCATGCTCAAACAACTCGACACCTT 285 consensus_5465#2 TCAACACAAAAACACCTTCGGGGGGG--AAGAAGGCAAGAACGCTTCTTCTGCCTACATT 252 consensus_5465#1 CTAGCAAACAATTATAATCATTGTAATTGTAATGTTCAAATT---ATAATTACAATTATT 290 * * * * * * ** consensus_5465#0 TGGGCATCCGAATGTGGTGA--AACTCCTAGATGTGTGTCAAGGGCAACGGCTANAGCGC 343 consensus_5465#2 ACAGTACTAGAGT-TAGTGA--AATTACCAG---TAAACCCGGACTGCCAACGAAATTGT 306 consensus_5465#1 ATAATTATCAAAGGTAATAATAAATGAAAATAAGTATAATCAAAACTAATTCTATTTCTT 350 * * * * ** * * * * consensus_5465#0 GAAGGGCAGTTGGTGCTGTTTCTAGTGTT-CGAGCATCTGGATCACGATCTGGATGAGTA 402 consensus_5465#2 GTACTACTACTACTACTACTACTACTATTGCTAGTAGTAGCA--ACGATCT-------TA 357 consensus_5465#1 AAAACAATATCTCTGAAGTCTCTGAAATCCAAAACAAGAAAATGAGCGAAAAATAAATGA 410 * * ** * * * * * * consensus_5465#0 CATTAA-GCGTCTACCACCGAAAGGA-ATGCCTCCGGCCACTATACAGCGACTATCGCGC 460 consensus_5465#2 TGATAT-GAATATTTTG------GTA-TTGCTGCCTGTCTCTTTCC--CTCCCTCCATAC 407 consensus_5465#1 CACCAAAGTTTTCACTAACCCAACTACACGCCTTTCTCCTATTTCCTTCTTGTTTCCCAC 470 * * * * ** * * * * * * * consensus_5465#0 GAAATGCTTACCGGCATCGACTTCCTGCACTCGCACCGCATCATCCACCGGGACTTGAAG 520 consensus_5465#2 ACAGTCACAGCCATCATATGTTCGTTTTTTTTGCTCGATATTGTTAGGTAAGGC---AAA 464 consensus_5465#1 TGCTTTCTCCCCATTTTTTGCTATCTCCCTCTGTTT-GCCTTACCTAACAATATC--GAG 527 * ** * * * * * * consensus_5465#0 CCGCAGAATCTCCTCATCTCGAGCGACG-GCCACCTGAAGCTGGCCGACTTTGGGCTCGC 579 consensus_5465#2 CAGAGGGA------CACAGCAAACAATG-GGGAGAAAGCAGAGGGAAACAAGAAGGAAAT 517 consensus_5465#1 CAAAAAAA---------AACGAACAATATGATGGCTGTGACTGTGTATGGAGGGAGGGAA 578 * * * * * * * * consensus_5465#0 CAAAACGTACGACTTTGAGATGAAGCTAACGACGGTTGTGGTGACGCTTTGGTACCGTGC 639 consensus_5465#2 CAGAGC---TAGGCGTGTAGTTGGGTTAGTGAAAACTTTGGTGTCATGTATTTTTCACTC 574 consensus_5465#1 AGAGAC---AGGCAGCAATACCAAAATATTCA----TATCATAAAGATCGTTGCCTACTC 631 * ** * * * * * consensus_5465#0 -TCCGGAAGTCCTGCTTGGCGAAGCGTACAACAGNTCGGTCGACATCTGGAGTGCGGGCT 698 consensus_5465#2 ATTTTCTTGTTTTGGATTTCAGAGACTTCAG-AGATATTTTTTTTTAAGAAATAGAATTA 633 consensus_5465#1 -ACTAGTAGTTGTAGCTAGTAGNTAGTACACAAATTCGTTGGCAGTCCGGGTTACNGGTA 690 ** * * * ** * * * * * * consensus_5465#0 GTATC-ATTGCGGAAATGTTCCAGCGGCAAGCGTTGTTCCCGGGCACGGCCGAGGGCAAT 757 consensus_5465#2 GTCTTGATTATACTTATTTTCATTT----------------------------------- 658 consensus_5465#1 ATTTC-ACTANTCTAGTACTGTAATGCCTCGTGCCGAATTCTNGGCTCGC--AGGGCAAT 747 * * * * * * consensus_5465#0 CAGCTGGAACGAATATTCGAATTAACTGGCCGCCCATCGGAAGCGCAGTGGCCGAGGGGC 817 consensus_5465#2 ------------------------------------------------------------ consensus_5465#1 CC-CTATNGGAGTCGTTTAAATCAN----------------------------------- 771 consensus_5465#0 ATTTCGATCGTGCGGGAAAACTTCCGCTCCACCCAGCGGCGGGAACCGCGCGAATTCTGN 877 consensus_5465#2 ------------------------------------------------------------ consensus_5465#1 ------------------------------------------------------------ consensus_5465#0 CCGAAGATGTGCGACAATGCGAACGATCTCCTAAAGAGCATGCTCGCCTTCAGCCGGCAC 937 consensus_5465#2 ------------------------------------------------------------ consensus_5465#1 ------------------------------------------------------------ consensus_5465#0 GAACGTCCGTCCGCAAGGNAGTGCCTTAACCATGCCTACTTCAACAGGAACCGATGCCGA 997 consensus_5465#2 ------------------------------------------------------------ consensus_5465#1 ------------------------------------------------------------ consensus_5465#0 CGTAAGGGAGCATCNCCTTA 1017 consensus_5465#2 -------------------- consensus_5465#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||