Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5474 cluster # 5474       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5474#0 length = 1443 sequences # 3  
consensus_5474#1 length = 551 sequences # 1  

consensusID : consensus_5474#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1443
fasta sequence
                              [CCGCGGACGCGTGGGCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACAT-GATGCTGGGTTTGACGCATCCAAT-GTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGACGACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATTGCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCCGTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTCACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGACAGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGCCGTGTACTGGGACTGAGTATGTC]

[+] EMBL BM576802             [CCGCGGACGCGTGGGCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACATGGATGCTGGGTTTGACGCATCCAATAGTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM633717             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccgGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACAT GATGCTGGGTTTGACGCATCCAAT GTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAA                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BX624452             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAGCATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCCCTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGCCAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGTACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATCCTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGACGACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATTGCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCCGTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTCACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGACAGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGCCGTGTACTGGGACTGAGTATGTC]


>consensus_5474#0 CCGCGGACGCGTGGGCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCC TAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTT CGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATC GCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCAC GATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCC CATCGATCCATGGGCAACAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATG GTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAAC GCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGATCTGCTCAT TACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGT AGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACC GATCTCCACCATTCCCAACATGATGCTGGGTTTGACGCATCCAATGTCGTTCCGAGATCG GCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTA TCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGT TCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACC GTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGACAAACCTTCACCCCT GCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCT CGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATACTGCAAAC ATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAA ACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGACGACATTCTCGCCCATCCGAA CGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATTGCGGAGGCACTGTTCCACGG GGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCCGTCAATCTGGCCAAGGTTGA AAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTCACGGTGGAGACGTTCTCGAA NGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGACAGTGTGCAACGATTGTCCGA GCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGCCGTGTACTGGGACTGAGTAT GTC



consensusID : consensus_5474#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence
                              [CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCTCGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGA]

[+] EMBL BM636389             [CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCTCGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGA]


>consensus_5474#1 CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTAT TATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCC TTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGC CCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGC CATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAA ATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCT CGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTC GAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGT GCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCG GAGGGATTCGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5474#0      CCGCGGACGCGTGGG-----------CGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTAT 49
consensus_5474#1      CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTAT 60
                      ***************           **********************************

consensus_5474#0      TATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCC 109
consensus_5474#1      TATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCC 120
                      ************************************************************

consensus_5474#0      TTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGC 169
consensus_5474#1      TTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGC 180
                      ************************************************************

consensus_5474#0      CCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGC 229
consensus_5474#1      CCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGC 240
                      ************************************************************

consensus_5474#0      CATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAA 289
consensus_5474#1      CATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAA 300
                      ************************************************************

consensus_5474#0      ATTACGATCCCCATCGATCCATGGGCAACAG----------------------------- 320
consensus_5474#1      ATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCT 360
                      *******************************                             

consensus_5474#0      ----------------------------------------ATTTCACGAAAATCATCTTC 340
consensus_5474#1      CGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTC 420
                                                              ********************

consensus_5474#0      GAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGT 400
consensus_5474#1      GAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGT 480
                      ************************************************************

consensus_5474#0      GCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCG 460
consensus_5474#1      GCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCG 540
                      ************************************************************

consensus_5474#0      GAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCAC 520
consensus_5474#1      GAGGGATTCGA------------------------------------------------- 551
                      ***********                                                 

consensus_5474#0      CAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGAT 580
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      TTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACATGATGCTGGGTTTGACGCAT 640
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      CCAATGTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTT 700
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      TCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAG 760
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      TACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTC 820
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      ACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATC 880
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      AAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAG 940
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      GGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATG 1000
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      CTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGAC 1060
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      ACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGAC 1120
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      GACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATT 1180
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      GCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCC 1240
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      GTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTC 1300
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      ACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGAC 1360
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      AGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGC 1420
consensus_5474#1      ------------------------------------------------------------
                                                                                  

consensus_5474#0      CGTGTACTGGGACTGAGTATGTC 1443
consensus_5474#1      -----------------------
                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)