These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5474#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1443 fasta sequence [CCGCGGACGCGTGGGCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACAT-GATGCTGGGTTTGACGCATCCAAT-GTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGACGACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATTGCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCCGTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTCACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGACAGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGCCGTGTACTGGGACTGAGTATGTC] [+] EMBL BM576802 [CCGCGGACGCGTGGGCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACATGGATGCTGGGTTTGACGCATCCAATAGTCG ] [+] EMBL BM633717 [ ccgGAACCGGAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCACCAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGATTTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACAT GATGCTGGGTTTGACGCATCCAAT GTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAA ] [+] EMBL BX624452 [ GTGGATTCTTTTTTGATGAGATTTTTTCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAGCATTTCCCACCGGGACAGTACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCCCTCGTGTTCTTGAATCACCACTTCACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATCAAAGCCAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAGGGAGTTATCTTTTTCAGCCTCGGTACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATGCTGAGTGCAATCCTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGACACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGACGACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATTGCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCCGTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTCACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGACAGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGCCGTGTACTGGGACTGAGTATGTC] consensusID : consensus_5474#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCTCGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGA] [+] EMBL BM636389 [CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTATTATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCCTTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGCCCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGCCATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAAATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCTCGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTCGAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGTGCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCGGAGGGATTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5474#0 CCGCGGACGCGTGGG-----------CGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTAT 49 consensus_5474#1 CCGCGGACGCGTGGGTTCTAGAGACCCGCCAGTTAAGTAGTGCGCAGTGCAAAACAGTAT 60 *************** ********************************** consensus_5474#0 TATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCC 109 consensus_5474#1 TATCGTAAGCCTAAGCCTATAGATATGGCTAAAATTGACCGGGTGTTGATATGTGTGGCC 120 ************************************************************ consensus_5474#0 TTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGC 169 consensus_5474#1 TTGTCGTTGTTCGTGTTCCCGCTAGCTTCTAGCTACAGAATATTGGGCATCAATACCAGC 180 ************************************************************ consensus_5474#0 CCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGC 229 consensus_5474#1 CCTAGCCGATCGCATGTGATTGTGCAGGATGCTCTTATGAAAGAGTTGGCACGCCGGGGC 240 ************************************************************ consensus_5474#0 CATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAA 289 consensus_5474#1 CATCATGTCACGATGGTGAGTCCTTACCCCGAGCCGGAACGGATACCGAACTATCGAAAA 300 ************************************************************ consensus_5474#0 ATTACGATCCCCATCGATCCATGGGCAACAG----------------------------- 320 consensus_5474#1 ATTACGATCCCCATCGATCCATGGGCAACAGGTAGTACCGAGCAACTGAAAGACATCTCT 360 ******************************* consensus_5474#0 ----------------------------------------ATTTCACGAAAATCATCTTC 340 consensus_5474#1 CGAATGTAATTACAAGTATTTCTCTGCTTCTGATTTAAAGATTTCACGAAAATCATCTTC 420 ******************** consensus_5474#0 GAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGT 400 consensus_5474#1 GAAAACACCAACTCCCGATGGTTGATGATGCAGATGATGCCATACATGCTGCGTGCCAGT 480 ************************************************************ consensus_5474#0 GCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCG 460 consensus_5474#1 GCCGTTCCGGTTAATAAAACGCTACGCTCGCCAGAGGTTCAGAGTGTGCTAAAAGAACCG 540 ************************************************************ consensus_5474#0 GAGGGATTCGATCTGCTCATTACCGGGATCATGACAGATGCTGCATTCGGTGTGAGTCAC 520 consensus_5474#1 GAGGGATTCGA------------------------------------------------- 551 *********** consensus_5474#0 CAGCTTGGCTGTCCGACGGTAGTGGTATGCCCAAATGCAGCGATGGCGGTCGTGAACGAT 580 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 TTAGTGGGCAATCCAACACCGATCTCCACCATTCCCAACATGATGCTGGGTTTGACGCAT 640 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 CCAATGTCGTTCCGAGATCGGCTGGCAAACCTTGGTGGATTCTTTTTTGATGAGATTTTT 700 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 TCGTTCGTGTGGAAGTACTATCAGCGGCAAACCTACGAAGAACATTTCCCACCGGGACAG 760 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 TACCCATCGTACGAAGCTGTTCGGAAGAATGTTTCACTCGTGTTCTTGAATCACCACTTC 820 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 ACCAAAGGTTCTCCACGACCGTACGTACCAGCGATGATTGAGGTTGGTGGATTGCAGATC 880 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 AAAGACAAACCTTCACCCCTGCCCGAAGACGTGCGCCAGTGGATAGAAGGCGCGGAGGAG 940 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 GGAGTTATCTTTTTCAGCCTCGGCACCAATCTGTTCAGCTCTTCCATGCCGCCGGAGATG 1000 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 CTGAGTGCAATACTGCAAACATTCCGCACGCTGAAGCAACGCATCATCTGGAAATGGGAC 1060 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 ACACAGGACATGCCGAACAAACCGGCCAACGTGATGCTGAAGGATTGGCTACCGCAGGAC 1120 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 GACATTCTCGCCCATCCGAACGTGCGGCTGTTTATCATGCACGGTGGATTGGGCGGCATT 1180 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 GCGGAGGCACTGTTCCACGGGGTACCGCTCGTCGGCATACCGATGTTTGGCGATCAGCCC 1240 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 GTCAATCTGGCCAAGGTTGAAAAGGAAGGCTGGGCTTACGTTCTGAAGCACACCGAGGTC 1300 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 ACGGTGGAGACGTTCTCGAANGCGGTTAATGAAGTGCTGCACAATCCACGCTATCGGGAC 1360 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 AGTGTGCAACGATTGTCCGAGCTGTTTCGGGATCGACCCCCAAAGCGCCATGGATACNGC 1420 consensus_5474#1 ------------------------------------------------------------ consensus_5474#0 CGTGTACTGGGACTGAGTATGTC 1443 consensus_5474#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||