These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 881 fasta sequence [CCGCGTTTTCGTCCGGACGTGCGTGAGCAGTGCGTTCACCGTGAAGGTCGTGCCTAGGGGTTTGTAACAACATTTCATCCCCAGGTAAGTGGGGACCAGTCCAGTCAAATCGGAAGCCTTTCCACTCTCAACAGCTTCAGGCTAATCATACCGACAGCTAGCAAAAGTGGAGAGGAAAGTGTCCTTTTATTAGAATCATTAGCTGGTAGCAGCCATTCGGGTTCCCTGTGACGGGAGCTGTTGAGTTTGTGTTCGAGATTACGCCACTTTACGAATCATCCGGATTAATCTCAAGTGTGTGTACGGTGCGGGTACGTTTGAGTGTGTCAAATGTTTATTTGCTAAGTATATTAGCAACAGCAGCAGTAGTGCGTAGGTATGCAAAAGGCAACAACGTGAAGAGTGTGTGAGTGTTTGCTAGAGCAACGCTGCCCCAAAACAAGTGCTGTTGTGTAGAAAGGGTAAATAGGTCGTAGTGCAAAAGTATGTCATTCTCAGTGTGAAGTTAGACCAGCGCGGGCTCAAGTGTGAGAGCGTGCACAGGGTCCAGCAGTGCATATGGGTTTGACAGGTGCAACCCGGAACGGATTCCCCGGGTGAACTGGCACGTGCGATCTATCAGCAGTCGACAAGTCAAAGCTGCCGAGAGCGTCCAACAGCTAGCGTAGTGACTCACTCACCGACCAGCATCAATCACCGGACTCACCTTCCAGCAGTGAGGTTGACAGTTTGCTGCAGCCACCGTCCAGCGAAGCCAGCGAGATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTCCGAGGTGGCAAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAA] [+] EMBL BM580760 [CCGCGTTTTCGTCCGGACGTGCGTGAGCAGTGCGTTCACCGTGAAGGTCGTGCCTAGGGGTTTGTAACAACATTTCATCCCCAGGTAAGTGGGGACCAGTCCAGTCAAATCGGAAGCCTTTCCACTCTCAACAGCTTCAGGCTAATCATACCGACAGCTAGCAAAAGTGGAGAGGAAAGTGTCCTTTTATTAGAATCATTAGCTGGTAGCAGCCATTCGGGTTCCCTGTGACGGGAGCTGTTGAGTTTGTGTTCGAGATTACGCCACTTTACGAATCATCCGGATTAATCTCAAGTGTGTGTACGGTGCGGGTACGTTTGAGTGTGTCAAATGTTTATTTGCTAAGTATATTAGCAACAGCAGCAGTAGTGCGTAGGTATGCAAAAGGCAACAACGTGAAGAGTGTGTGAGTGTTTGCTAGAGCAACGCTGCCCCAAAACAAGTGCTGTTGTGTAGAAAGGGTAAATAGGTCGTAGTGCAAAAGTATGTCATTCTCAGTGTGAAGTTAGACCAGCGCGGGCTCAAGTGTGAGAGCGTGCACAGGGTCCAGCAGTGCATATGGGTTTGACAGGTGCAACCCGGAACGGATTCCCCGGGTGAACTGGCACGTGCGATCTATCAGCAGTCGACAAGTCAAAGCTGCCGAGAGCGTCCAACAGC ] [+] EMBL BM632341 [ cCGGGTTCCCTGTGACGGGAGCTGTTGAGTTTGTGTTCGAGATTACGCCACTTTAAGAATCATCCGGATTAATCTCAAGTGTGTGTACGGTGCGGGTACGTTTGAGTGTGTCAAATGTTTATTTGCTAAGTATATTAGCAACAGCAGCAGTAGTGCGTAGGTATGCAAAAGGCAACAACGTGAAGAGTGTGTGAGTGTTTGCTAGAGCAACGCTGCCCCAAAACAAGTGCTGTTGTGTAG AAGGGTAAATAGGTCGTAGTGCAAAAGTATGTCATTCTCAGTGTGAAGTCAGACCAGCGCGGGCTCAAGTGCGAGAGCGTGCACA GGTCCAGCAGTGCATAT GGTTTGACAGGTGCAACCCGGAACGGATTCCCCGGGTGAACTGGCACGTGCGATCTATCAGCAGTCGACAAGTCAAAGCCACCGAGAGCGTCCAACAGCTAGCGTAGTGACTCACTCACCGACCAGCATCAATCACCGGACTCACCTTCCAGCAGTGAGGTTGACAGTTTGCTGCAGCCACCGTCCAGCGAAGCCAGCGAGATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTCCGAGGTGGCAAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAA] consensusID : consensus_5485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CCGCCCACGCGTCCGCACGACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGCCCGGCTGCACGATCTGCCGGCTTGGGTATTCTTTCCCGACGTTGAACGTTGCGAATGGCTTAACAGGATCCTGAAACAAGTCTGGCCCAATGCAAACTTTTACGCGAAAAATCTCATCAAGGAATCGATCGAACCCAACATCCAGCAGGCGATGGCTGGCTACAAGCTGAACGGATTCAAATTTGACCGAATGATTCTGGGAACGATTCCACCACGCATCGGCGGCGTCAAGGTGTACGACAAGAACGTGTCTCGCAATGAAATCATCATGGATCTGGACCTGTTCTATGCGGGCGACTGCGATATCAGCTTTGCGCTCAGCGGGCTGCGGGGTGGCATCAAGGACTTCCAGATTCACGGCACGGTGCGCGTAATAATGAAGCCACTCATTTCCCAGATGCCGCTCATCGGCGGGCTGCAGATATTCTTCCTCAACAATCCCAACATTGACTTTAACCTGGTCGGCGTGGTGGATCTGCTCGATATGCCCGGGCTGAGCGACATACTGCGAAAGATTATCGTGGAGCAGGTGGCCGCCATCATGGTCCTGCCGAACAAGCTGCCTATCGTGCTGAGCGATGGGGTGCCGGCACTGTCGTTGAAGATGCCCGAACCCGAGGGCGTACTTA] [+] EMBL BM577238 [CCGCCCACGCGTCCGCACGACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGCCCGGCTGCACGATCTGCCGGCTTGGGTATTCTTTCCCGACGTTGAACGTTGCGAATGGCTTAACAGGATCCTGAAACAAGTCTGGCCCAATGCAAACTTTTACGCGAAAAATCTCATCAAGGAATCGATCGAACCCAACATCCAGCAGGCGATGGCTGGCTACAAGCTGAACGGATTCAAATTTGACCGAATGATTCTGGGAACGATTCCACCACGCATCGGCGGCGTCAAGGTGTACGACAAGAACGTGTCTCGCAATGAAATCATCATGGATCTGGACCTGTTCTATGCGGGCGACTGCGATATCAGCTTTGCGCTCAGCGGGCTGCGGGGTGGCATCAAGGACTTCCAGATTCACGGCACGGTGCGCGTAATAATGAAGCCACTCATTTCCCAGATGCCGCTCATCGGCGGGCTGCAGATATTCTTCCTCAACAATCCCAACATTGACTTTAACCTGGTCGGCGTGGTGGATCTGCTCGATATGCCCGGGCTGAGCGACATACTGCGAAAGATTATCGTGGAGCAGGTGGCCGCCATCATGGTCCTGCCGAACAAGCTGCCTATCGTGCTGAGCGATGGGGTGCCGGCACTGTCGTTGAAGATGCCCGAACCCGAGGGCGTACTTA] consensusID : consensus_5485#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [CCGGACCAGTGTGGTTCACGTTCGCGTAGAAGGTGGTCAACGGGTTTTACGTCGAGGTTATTGCAAAAAAAAAACGGTACCAAAATTCGAGGGGCCGTGGTTCTAGAATAGCATCTTGATCTAAAATAAACATTGTGATCTTTGGTGCCGTGGAGTGTGGATGGAAAACAGTGCCAAAAAAGTGTATTTCGAGTAAAAGGTTTGGTTTGGCGGAGAGTCTGGAGGCGATCATCAGCGTTCAGTTGTGTAGCGTAGCAGCATCAAAATGAGTGACTCACTCACCGACCAGCATCAATCACCGGACTCACCTTCCAGCAGTGAGGTCGACAGTTTGCTGCAGCCACCGTCCAGCGAAGCCAGCGAGATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTCCGAGGTGGCGAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAAGGTGGTGACGGTCGGTATCATCTACTTCGTCGGCTACATGGGCTGGTCGGTGGCGTGGCTCATCACGCCCGTCATCCTGTCGGTGGCACGCGAATCCTGGCGCAAAACGAACGACACACGACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGC] [+] EMBL BM614656 [CCGGACCAGTGTGGTTCACGTTCGCGTAGAAGGTGGTCAACGGGTTTTACGTCGAGGTTATTGCAAAAAAAAAACGGTACCAAAATTCGAGGGGCCGTGGTTCTAGAATAGCATCTTGATCTAAAATAAACATTGTGATCTTTGGTGCCGTGGAGTGTGGATGGAAAACAGTGCCAAAAAAGTGTATTTCGAGTAAAAGGTTTGGTTTGGCGGAGAGTCTGGAGGCGATCATCAGCGTTCAGTTGTGTAGCGTAGCAGCATCAAAATGAGTGACTCACTCACCGACCAGCATCAATCACCGGACTCACCTTCCAGCAGTGAGGTCGACAGTTTGCTGCAGCCACCGTCCAGCGAAGCCAGCGAGATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTCCGAGGTGGCGAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAAGGTGGTGACGGTCGGTATCATCTACTTCGTCGGCTACATGGGCTGGTCGGTGGCGTGGCTCATCACGCCCGTCATCCTGTCGGTGGCACGCGAATCCTGGCGCAAAACGAACGACACACGACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5485#0 CCGCGTTTTCGTCCGGACGTGCGTGAGCAGTGCGTTCACCGTGAAGGTCGTGCCTAGGGG 60 consensus_5485#2 ------------------------------------------------------------ consensus_5485#1 ------------------------------------------------------------ consensus_5485#0 TTTGTAACAACATTTCATCCCCAGGTAAGTGGGGACCAGTCCAGTCAAATCGGAAGCCTT 120 consensus_5485#2 ------------------------------------------------------------ consensus_5485#1 ------------------------------------------------------------ consensus_5485#0 TCCACTCTCAACAGCTTCAGGCTAATCATACCGACAGCTAGCAAAAGTGGAGAGGAAAGT 180 consensus_5485#2 ------------------------------------------------------------ consensus_5485#1 ------------------------------------------------------------ consensus_5485#0 GTCCTTTTATTAGAATCATTAGCTGGTAGCAGCCATTCGGGTTCCCTGTGACGGGAGCTG 240 consensus_5485#2 ------------------------------------------------------------ consensus_5485#1 ------------------------------------------------------------ consensus_5485#0 TTGAGTTTGTGTTCGAGATTACGCCACTTTACGAATCATCCGGATTAATCTCAAGTGTGT 300 consensus_5485#2 ------------------------------------------------------------ consensus_5485#1 ------------------------------------------------------------ consensus_5485#0 GTACGGTGCGGGTACGTTTGAGTGTGTCAAATGTTTATTTGCTAAGTATATTAGCAACAG 360 consensus_5485#2 ------------------------------------------------------------ consensus_5485#1 -----------------------------------------CCGCCCACGCGTCCGCACG 19 consensus_5485#0 CAGCAGTAGTGCGTAGGTATGCAAAAGGCAACAACGTGAAGAGTGTGTGAGTGTTTGCTA 420 consensus_5485#2 ----------CCGGACCAGTGTGGTTCACGTTCGCGTAGAAGGTG-GTCAACGGGTTTTA 49 consensus_5485#1 ACGCAGCGTAGCGAAGGCGTCCG-CTCTCGCCAACGATAAGGAAG--TCATCCTGGCCCG 76 ** * * * ** * * * * consensus_5485#0 GAGCAACGCTGCCCCAAAACAAGTGCTGTTGTGTAGAAAGGGTAAATAGGTCG--TAGTG 478 consensus_5485#2 CGTCGAGGTTATTGCAAAAAAAAAACGG-----TACCAAAATTCGAGGGGCCG--TGGTT 102 consensus_5485#1 GCTGCACGATCTGCCGGCTTGGGTATTCTT---TCCCGACGTTGAACGTTGCGAATGGCT 133 * * * * * * * * ** * * consensus_5485#0 CAAAAGTATGTCATTCTCAGTGTGA---AGTTAGACCAGCGCGGGCTCAAGTGTGA---G 532 consensus_5485#2 CTAGAATA--GCAT-CTTGATCTAA---AAT--AAACATTGTGATCTTTGGTGCCGT-GG 153 consensus_5485#1 TAACAGGATCCTGAAACAAGTCTGGCCCAATGCAAACTTTTACGCGAAAAATCTCATCAA 193 * * * * * * * * * * consensus_5485#0 AGCGTGCACAGGGTCCAGCAGTGCATATGGGTTTGACAGGTGCAACCCGGA-----ACGG 587 consensus_5485#2 AGTGTGGATGGAAAACAGTGCCAAAAAAGTGTATTTCGAGTAAAA----GG-----TTTG 204 consensus_5485#1 GGAATCGATCGAACCCAACATCCAGCAGGCGATGGCTGGCTACAAGCTGAACGGATTCAA 253 * * * * ** * * * * ** consensus_5485#0 ATTCCCCGGGTGAACTGGCACGTGCGATCTATCAGCAGTCGACAAGTCAAAGCTGCCGAG 647 consensus_5485#2 GTTTGGCGGAGAGTCTGG---AGGCGATC-ATCAGCGTTC----------AGTTGTGTAG 250 consensus_5485#1 ATTTGACCGAATGATTCTGGGAACGATTCCACCACGCATCGGCGGCGTCAAGGTGTACGA 313 ** * * * ** * ** ** ** ** consensus_5485#0 AGC-GTCCAACAGCTAGCGTAGTGACTCACTCACC--GACCAGCATCAATCACCGGACTC 704 consensus_5485#2 CGT-AGC-AGCATCAAAATGAGTGACTCACTCACC--GACCAGCATCAATCACCGGACTC 306 consensus_5485#1 CAAGAACGTGTCTCGCAATGAAATCATCATGGATCTGGACCTGTTCTATGCGGGCGACTG 373 * * * *** * * **** * * * **** consensus_5485#0 ACCTTCCAGCAGTGAGGTTGACAGTTTGCTGCA-GCCACC--GTCCAGCGAAGCCAGCGA 761 consensus_5485#2 ACCTTCCAGCAGTGAGGTCGACAGTTTGCTGCA-GCCACC--GTCCAGCGAAGCCAGCGA 363 consensus_5485#1 CGATATCAGCTTTGCGCTCAGCGGGCTGCGGGGTGGCATCAAGGACTTCCAGATTCACGG 433 * **** ** * * * * *** * * ** * * * * * ** consensus_5485#0 GATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTC 821 consensus_5485#2 GATGGCGGGCGCAAGCAAAGAGCTAAGCCCGGAAAAGCAATCAGCACCGCCGGAGTCCTC 423 consensus_5485#1 CACGGTGCGCGTAATAATGAAGCCACTCATTTCCCAGATGCCGCT--CATCGGCGGGCTG 491 * ** * *** ** * *** * * ** * * *** * ** consensus_5485#0 CGAGGTGGCAAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAA 881 consensus_5485#2 CGAGGTGGCGAAAACGAAGGACGACAGCATCATGACGCTGCTGTACTCGTTCGCGAAGAA 483 consensus_5485#1 C-AGATATTCTTCCTCAACAATCCCAACAT--TGACTTTAACCTGGTCGG-CGTGGTGGA 547 * ** * ** * ** *** **** * * *** ** * * * consensus_5485#0 ------------------------------------------------------------ consensus_5485#2 GGTGGTGACGGTCGGTATCATCTACTTCGTCGGCTACATGGGCTGGTCGGTGGCGTGGCT 543 consensus_5485#1 TCTGCT--CGATATGCCCGGGCTGAGCGACATACTGCGAAAGATTATCG-TGGAGCAGGT 604 consensus_5485#0 ------------------------------------------------------------ consensus_5485#2 CATCACGCCCGTCATCCTGTCGGTGGCACGCGAATCCTGGCGCAAAACGAACGACACACG 603 consensus_5485#1 GGCCGCCATCATGGTCCTGCCG--AACAAGCTGCCTATCGTGCTGAGCGATGGGGTGCCG 662 consensus_5485#0 ------------------------------------------------------ consensus_5485#2 ACGCAGCGTAGCGAAGGCGTCCGCTCTCGCCAACGATAAGGAAGTCATCCTGGC 657 consensus_5485#1 GCACTGT-CGTTGAAGATGCCCGAACCCGAGGGCGTACTTA------------- 702 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||