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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1084 fasta sequence
[GGCAGATCGCCACGAGGAAATCAGGCGGCACATTCATTATTTTAAGGAAACTCCCACGTGACCAACGAGCAAGTGCTGCACAATATGATAAGATCAGTATTGGCGCTATTCCTTTTGGGATGCGCAACGGCTCAAGCACAAACAAACCCTTGCCAAGGCCAACCTAACTACCGTTTTGTGGCCGATGCAACAAGCTGCTATAAATATTTTACATGTGTCAATGGTGAACCTTTTCCGCAAGAATGTCCCGTGCCATTTGTTTTTGTTGAAGCAACTCAGTCATGCGACTATGGTGATCGAAACGCATGCGTTAACTGTCCAGCGACCGGCATTCAAAACTTTCCAGTAAGTGGTTCCTGCGACCCAATTTATTCAGTGCATCGAGGGTAGCCAGTTTCCGCGTGAATGCCCACCGGGTACGGCGTTCGACTCAAACAGTGGACAGTGCAACTTAGCATCGGCAGTCAATTGTATAGCATGTCCTGCCGAGGATGATCCTGCTAACCCAACATTTATACCAGATGCAACCGACTGTCGGAAGTATTTCATTTGCGTCGGTGGTTCAGGAATCGAACGAAATCTGCCCAGAAGGAACTAGCTTCAATCCATCGCTAAACGTTTGTGATCTTCCGGACCGAGTGCAAATGTCCAGCTGTTGTAAGGTTTNGTTCGGTTGAAGAATTCGATTGTCACAAAAAACGCTTCGAAATCCAGATTNGGCAACCTGGTAAACTCACACTACTTATTTAGGCTCCTAATGTTCAACNCTCTTTCACNGCAACAGCAGCAGACAGCACACACAACCAGGGCAATTTTTAGACTGGCCCCGGAACAAGCCTTATTTCCCCCCCTTTTTTCAACGATTTCAACAGGGGGTTCTNAANCATCTTCTTACAAACGCATTTAGGTGCACAAACNTTGGACCCGAGTCAAGGTATTAACCACAACACCTNTTCCTNGTAAACCTTGGTGGGAAAAAAAACACCCTCTGTGGTTTATCAACCCACAACTTTTAAATCGCCCCCTTTTGGAAACACAAATTNCCCANCCACTTTTCGAGCCCACAGCTAGTCGNNATTATCAT]
[+] EMBL BX467681 [GGCAGATCGCCACGAGGAAATCAGGCGGCACATTCATTATTTTAAGGAAACTCCCACGTGACCAACGAGCAAGTGCTGCACAATATGATAAGATCAGTATTGGCGCTATTCCTTTTGGGATGCGCAACGGCTCAAGCACAAACAAACCCTTGCCAAGGCCAACCTAACTACCGTTTTGTGGCCGATGCAACAAGCTGCTATAAATATTTTACATGTGTCAATGGTGAACCTTTTCCGCAAGAATGTCCCGTGCCATTTGTTTTTGTTGAAGCAACTCAGTCATGCGACTATGGTGATCGAAACGCATGCGTTAACTGTCCAGCGACCGGCATTCAAAACTTTCCAGTAAGTGGTTCCTGCGACCCAATTTATTCAGTGCATCGAGGGTAGCCAGTTTCCGCGTGAATGCCCACCGGGTACGGCGTTCGACTCAAACAGTGGACAGTGCAACTTAGCATCGGCAGTCAATTGTATAGCATGTCCTGCCGAGGATGATCCTGCTAACCCAACATTTATACCAGATGCAACCGACTGTCGGAAGTATTTCATTTGCGTCGGTGGTTCAGGAATCGAACGAAATCTGCCCAGAAGGAACTAGCTTCAATCCATCGCTAAACGTTTGTGATCTTCCGGACCGAGTGCAAATGTCCAGCTGTTGTAAGGTTTNGTTCGGTTGAAGAATTCGATTGTCACAAAAAACGCTTCGAAATCCAGATTNGGCAACCTGGTAAACTCACACTACTTATTTAGGCTCCTAATGTTCAACNCTCTTTCACNGCAACAGCAGCAGACAGCACACACAACCAGGGCAATTTTTAGACTGGCCCCGGAACAAGCCTTATTTCCCCCCCTTTTTTCAACGATTTCAACAGGGGGTTCTNAANCATCTTCTTACAAACGCATTTAGGTGCACAAACNTTGGACCCGAGTCAAGGTATTAACCACAACACCTNTTCCTNGTAAACCTTGGTGGGAAAAAAAACACCCTCTGTGGTTTATCAACCCACAACTTTTAAATCGCCCCCTTTTGGAAACACAAATTNCCCANCCACTTTTCGAGCCCACAGCTAGTCGNNATTATCAT]
consensusID : consensus_549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 757 fasta sequence
[GCAGAATCCGCACGAGTGCTCAAATCAGGCGGCACATTCATTATTTTAAGGAAACTCCCACGTGACCAACGAGCAAGTGCTGCACAATATGATAAGATCAGTATTGGCGCTATTCCTTTTGGGATGCGCAACGGCTCAAGCACAAACAAACCCTTGCCAAGGCCAACTAACTACCGTTTTGTGGCCGATGCACAAAGCTGCTATAAAATATTTTACATGTGTCAATGGTGAACCTTTTCCGCAAGAATGTCCCGTGCCATTTGTTTTTTGTTGAAGCAACTCAGGTCATGCGACTATGGTGATCGAAACGCATGCGTTAACTGTCCAGCGACCGGCATTCAAAACTTTCCAGTAAGTGGTTCCTGCACCCAATTTATTCAGTGCATCGAGGGTAGCCAGTTTCCGCGTGAATGCCCACCGGGTACGGCGTTCGACTCAAACAGTGGACAGTGCAACTTAGCATCGGCAGTCAATTGTATAGCATGTCCTGCCGAGGATGATCCTGCTAACCCAACATTTATACCAGATGCAACCGACTGTCGGAAGTATTTCATTTGCGTCGGTGTTCAGGAATCGAACAAATCTGCCCAGAAGGAACTAGCTTCNATCCATCGNTAACGGTTTGTGATCTTACGGACCGAGTGGCAATGTCCAGCTGTTGTAAGTTGTTGTGAGAATACGATGTCAGAACGCTCGAATCAAATTGGNCACTGTTAGATNATTACTATAGGNCTATTTGANAGAANAAGAGAAAACA]
[+] EMBL BX468783 [GCAGAATCCGCACGAGTGCTCAAATCAGGCGGCACATTCATTATTTTAAGGAAACTCCCACGTGACCAACGAGCAAGTGCTGCACAATATGATAAGATCAGTATTGGCGCTATTCCTTTTGGGATGCGCAACGGCTCAAGCACAAACAAACCCTTGCCAAGGCCAACTAACTACCGTTTTGTGGCCGATGCACAAAGCTGCTATAAAATATTTTACATGTGTCAATGGTGAACCTTTTCCGCAAGAATGTCCCGTGCCATTTGTTTTTTGTTGAAGCAACTCAGGTCATGCGACTATGGTGATCGAAACGCATGCGTTAACTGTCCAGCGACCGGCATTCAAAACTTTCCAGTAAGTGGTTCCTGCACCCAATTTATTCAGTGCATCGAGGGTAGCCAGTTTCCGCGTGAATGCCCACCGGGTACGGCGTTCGACTCAAACAGTGGACAGTGCAACTTAGCATCGGCAGTCAATTGTATAGCATGTCCTGCCGAGGATGATCCTGCTAACCCAACATTTATACCAGATGCAACCGACTGTCGGAAGTATTTCATTTGCGTCGGTGTTCAGGAATCGAACAAATCTGCCCAGAAGGAACTAGCTTCNATCCATCGNTAACGGTTTGTGATCTTACGGACCGAGTGGCAATGTCCAGCTGTTGTAAGTTGTTGTGAGAATACGATGTCAGAACGCTCGAATCAAATTGGNCACTGTTAGATNATTACTATAGGNCTATTTGANAGAANAAGAGAAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_549#0 GGCAGA-TCGCCACGAGG----AAATCAGGCGGCACATTCATTATTTTAAGGAAACTCCC 55
consensus_549#1 -GCAGAATCCGCACGAGTGCTCAAATCAGGCGGCACATTCATTATTTTAAGGAAACTCCC 59
***** ** ****** **************************************
consensus_549#0 ACGTGACCAACGAGCAAGTGCTGCACAATATGATAAGATCAGTATTGGCGCTATTCCTTT 115
consensus_549#1 ACGTGACCAACGAGCAAGTGCTGCACAATATGATAAGATCAGTATTGGCGCTATTCCTTT 119
************************************************************
consensus_549#0 TGGGATGCGCAACGGCTCAAGCACAAACAAACCCTTGCCAAGGCCAACCTAACTACCGTT 175
consensus_549#1 TGGGATGCGCAACGGCTCAAGCACAAACAAACCCTTGCCAAGGCCAAC-TAACTACCGTT 178
************************************************ ***********
consensus_549#0 TTGTGGCCGATGCAACAAGCTGCTATAAA-TATTTTACATGTGTCAATGGTGAACCTTTT 234
consensus_549#1 TTGTGGCCGATGCACAAAGCTGCTATAAAATATTTTACATGTGTCAATGGTGAACCTTTT 238
************** ************* ******************************
consensus_549#0 CCGCAAGAATGTCCCGTGCCATTTGTTTTT-GTTGAAGCAACTCAG-TCATGCGACTATG 292
consensus_549#1 CCGCAAGAATGTCCCGTGCCATTTGTTTTTTGTTGAAGCAACTCAGGTCATGCGACTATG 298
****************************** *************** *************
consensus_549#0 GTGATCGAAACGCATGCGTTAACTGTCCAGCGACCGGCATTCAAAACTTTCCAGTAAGTG 352
consensus_549#1 GTGATCGAAACGCATGCGTTAACTGTCCAGCGACCGGCATTCAAAACTTTCCAGTAAGTG 358
************************************************************
consensus_549#0 GTTCCTGCGACCCAATTTATTCAGTGCATCGAGGGTAGCCAGTTTCCGCGTGAATGCCCA 412
consensus_549#1 GTTCCTGC-ACCCAATTTATTCAGTGCATCGAGGGTAGCCAGTTTCCGCGTGAATGCCCA 417
******** ***************************************************
consensus_549#0 CCGGGTACGGCGTTCGACTCAAACAGTGGACAGTGCAACTTAGCATCGGCAGTCAATTGT 472
consensus_549#1 CCGGGTACGGCGTTCGACTCAAACAGTGGACAGTGCAACTTAGCATCGGCAGTCAATTGT 477
************************************************************
consensus_549#0 ATAGCATGTCCTGCCGAGGATGATCCTGCTAACCCAACATTTATACCAGATGCAACCGAC 532
consensus_549#1 ATAGCATGTCCTGCCGAGGATGATCCTGCTAACCCAACATTTATACCAGATGCAACCGAC 537
************************************************************
consensus_549#0 TGTCGGAAGTATTTCATTTGCGTCGGTGGTTCAGGAATCGAACGAAATCTGCCCAGAAGG 592
consensus_549#1 TGTCGGAAGTATTTCATTTGCGTCGGTG-TTCAGGAATCGAAC-AAATCTGCCCAGAAGG 595
**************************** ************** ****************
consensus_549#0 AACTAGCTTCAATCCATCGCTAAACGTTTGTGATCTTCCGGACCGAGTGCAAATGTCCAG 652
consensus_549#1 AACTAGCTTCNATCCATCGNTAACGGTTTGTGATCTTACGGACCGAGTGGCAATGTCCAG 655
********** ******** *** ************ *********** *********
consensus_549#0 CTGTTGTAAGGTTTNGTTCGGTTGAAGAATTCGATTGTCACAAAAAACGCTTCGAAATCC 712
consensus_549#1 CTGTTGTAAGTTGTTGT-------GAGAATACGAT-GTCA----GAACGCT-CGAA--TC 700
********** * * ** ***** **** **** ****** **** *
consensus_549#0 AGATTNGGCAACCTGGTAAACTCACACTA----CTTATTTAGGCTCCTAATGTTCAACNC 768
consensus_549#1 AAATTGGNCA--CTGTTAGATNATTACTATAGGNCTATTTGANAGAANAAGAGAAAACA- 757
* *** * ** *** ** * **** ***** ** ***
consensus_549#0 TCTTTCACNGCAACAGCAGCAGACAGCACACACAACCAGGGCAATTTTTAGACTGGCCCC 828
consensus_549#1 ------------------------------------------------------------
consensus_549#0 GGAACAAGCCTTATTTCCCCCCCTTTTTTCAACGATTTCAACAGGGGGTTCTNAANCATC 888
consensus_549#1 ------------------------------------------------------------
consensus_549#0 TTCTTACAAACGCATTTAGGTGCACAAACNTTGGACCCGAGTCAAGGTATTAACCACAAC 948
consensus_549#1 ------------------------------------------------------------
consensus_549#0 ACCTNTTCCTNGTAAACCTTGGTGGGAAAAAAAACACCCTCTGTGGTTTATCAACCCACA 1008
consensus_549#1 ------------------------------------------------------------
consensus_549#0 ACTTTTAAATCGCCCCCTTTTGGAAACACAAATTNCCCANCCACTTTTCGAGCCCACAGC 1068
consensus_549#1 ------------------------------------------------------------
consensus_549#0 TAGTCGNNATTATCAT 1084
consensus_549#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||