These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1121 fasta sequence [CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACAAAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAACGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGTAGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTAACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGAAAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACTTTT] [+] EMBL BX622817 [CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGANGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCGGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTA ] [+] EMBL BX617873 [ ATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTATCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTA ] [+] EMBL BM577490 [ ccgAGTGAACATAACCGTTCGAGGTATAGCTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACAAAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAACGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGTAGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTAACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGAAAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACTTTT] consensusID : consensus_5494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAACAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTCATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGTGAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAAACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAATAACGCACGGGGAATCACAGTTACANAN] [+] EMBL BX468331 [CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAACAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTCATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGTGAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAAACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAATAACGCACGGGGAATCACAGTTACANAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5494#0 ------------------------------------------------------------ consensus_5494#1 CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAA 60 consensus_5494#0 CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAG 60 consensus_5494#1 CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAG 120 ************************************************************ consensus_5494#0 GACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGA 120 consensus_5494#1 GACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGA 180 ************************************************************ consensus_5494#0 GGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAG 180 consensus_5494#1 GGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAG 240 ************************************************************ consensus_5494#0 TACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAA 240 consensus_5494#1 TACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAA 300 ************************************************************ consensus_5494#0 CCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGC 300 consensus_5494#1 CCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGC 360 ************************************************************ consensus_5494#0 AGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATA 360 consensus_5494#1 AGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATA 420 ************************************************************ consensus_5494#0 CATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAA 420 consensus_5494#1 CATGCTTAATAATATACACGTCACACCTTCTTTT-GTTGCAACACACACTCATTCAGCAA 479 ********************************** ************************* consensus_5494#0 ACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATT- 479 consensus_5494#1 ACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTC 539 *********************************************************** consensus_5494#0 ATTAGTATATTTA---TTGCTAA--CATCACTACA-CTAGAAAATAAACAGGTAAGAAGT 533 consensus_5494#1 ATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGT 599 *********** * *** * ********** ************************ consensus_5494#0 GAACATAA-CCGTTCGAGG-TATAG--TTGGTGAAAA---CTGATAT--AACGCGAAAA- 583 consensus_5494#1 GAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAA 659 ******* ********** ***** * ****** * **** ****** *** consensus_5494#0 --CGCTAGAC--AAAAAGTGC-AGGACATAGCCAACAACAAAAGAAAAAGGAATAACACG 638 consensus_5494#1 ACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAA 719 ***** ** ****** ********* * * *** ** * ** * ** consensus_5494#0 GATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCA 698 consensus_5494#1 TAACGC-ACGGGGAATCACAGTTACANAN------------------------------- 747 * * * * ***** consensus_5494#0 TCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATT 758 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 TACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACA 818 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 AAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAA 878 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 CGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGT 938 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 AGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTA 998 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 ACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGA 1058 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 AAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACT 1118 consensus_5494#1 ------------------------------------------------------------ consensus_5494#0 TTT 1121 consensus_5494#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||