Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5494 cluster # 5494       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5494#0 length = 1121 sequences # 3  
consensus_5494#1 length = 747 sequences # 1  

consensusID : consensus_5494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1121
fasta sequence
                              [CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACAAAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAACGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGTAGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTAACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGAAAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACTTTT]

[+] EMBL BX622817             [CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGANGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCGGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTA                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX617873             [                                                                                                                                                                                                                                                                                                              ATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTATTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATAACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTATCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTA                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BM577490             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccgAGTGAACATAACCGTTCGAGGTATAGCTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGCAGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACAAAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAACGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGTAGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTAACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGAAAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACTTTT]


>consensus_5494#0 CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAG GACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGA GGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAG TACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAA CCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGC AGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATA CATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAA ACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTA TTAGTATATTTATTGCTAACATCACTACACTAGAAAATAAACAGGTAAGAAGTGAACATA ACCGTTCGAGGTATAGTTGGTGAAAACTGATATAACGCGAAAACGCTAGACAAAAAGTGC AGGACATAGCCAACAACAAAAGAAAAAGGAATAACACGGATCATTAAAATATTTTGTAGT TAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCATCGAGTTGTCACTGATAGACAT TCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATTTACAGGATAGCTGCCTGATAGT CTAGGACTACTACTATGAGAGAAAAAAAAACAAACACAAAACAGGAACAGTAATGTTTGT TTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAACGAAAGAAAACAATATAAAACA AAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGTAGAAACTCTTAGGAAAGTAACA CAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTAACAGCGACAATTCGTTACGATT GTCTTCGATGATCAGAAAAATTATTATATATAAAAAGAAAAAAAACATATTATCTTTATA ACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACTTTT



consensusID : consensus_5494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence
                              [CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAACAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTCATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGTGAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAAACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAATAACGCACGGGGAATCACAGTTACANAN]

[+] EMBL BX468331             [CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAACAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAGGACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGAGGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAGTACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAACCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGCAGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATACATGCTTAATAATATACACGTCACACCTTCTTTTGTTGCAACACACACTCATTCAGCAAACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTCATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGTGAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAAACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAATAACGCACGGGGAATCACAGTTACANAN]


>consensus_5494#1 CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAA CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAG GACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGA GGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAG TACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAA CCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGC AGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATA CATGCTTAATAATATACACGTCACACCTTCTTTTGTTGCAACACACACTCATTCAGCAAA CCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTCA TTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGTG AACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAAA CNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAAT AACGCACGGGGAATCACAGTTACANAN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5494#0      ------------------------------------------------------------
consensus_5494#1      CGAGGCAGAATCGGCACGTAGGTGATATTGAACATTTGCAAAACTGCTGCTAAAAGCTAA 60
                                                                                  

consensus_5494#0      CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAG 60
consensus_5494#1      CAGAAGAATGAAATGAACAAGAACGGATTACAATACTAAACAAGCTACACTAGCGTGAAG 120
                      ************************************************************

consensus_5494#0      GACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGA 120
consensus_5494#1      GACACGCGTCTTTATGAAATTACTTGCATTCTAATTAGTGAATTTAATGGGACAAGTAGA 180
                      ************************************************************

consensus_5494#0      GGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAG 180
consensus_5494#1      GGAATAAATGCTGTAACAAAACAGCTTAAAGAGATGGTGAATTACACAAAAGTATTTAAG 240
                      ************************************************************

consensus_5494#0      TACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAA 240
consensus_5494#1      TACTTATTATCAATTACTTATTACTACGAGATAAATACACAGCAACCAACCACAACAAAA 300
                      ************************************************************

consensus_5494#0      CCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGC 300
consensus_5494#1      CCCAAAACTCAATAAAATTAAAACAAAAACCATGCTCTTACTAAATTACAACTCAACTGC 360
                      ************************************************************

consensus_5494#0      AGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATA 360
consensus_5494#1      AGATACAGCAAAAAGCATTGACACAGTAAAAGAAAGGCGCAACATATTTGCAATGCGATA 420
                      ************************************************************

consensus_5494#0      CATGCTTAATAATATACACGTCACACCTTCTTTTTGTTGCAACACACACTCATTCAGCAA 420
consensus_5494#1      CATGCTTAATAATATACACGTCACACCTTCTTTT-GTTGCAACACACACTCATTCAGCAA 479
                      ********************************** *************************

consensus_5494#0      ACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATT- 479
consensus_5494#1      ACCATGATTAGTGTGGTTGTACTACAAAAGTGAACAAACTAAGTCTAACTATGATTATTC 539
                      *********************************************************** 

consensus_5494#0      ATTAGTATATTTA---TTGCTAA--CATCACTACA-CTAGAAAATAAACAGGTAAGAAGT 533
consensus_5494#1      ATTAGTATATTCGAGTTGGCTGAAGCATCACTACAGCTAGAAAATAAACAGGTAAGAAGT 599
                      ***********     * *** *  ********** ************************

consensus_5494#0      GAACATAA-CCGTTCGAGG-TATAG--TTGGTGAAAA---CTGATAT--AACGCGAAAA- 583
consensus_5494#1      GAACATANACCGTTCGAGGGTATAGGTTCGGTGAANAAACTGGATAATAAACGCGGAAAA 659
                      *******  ********** *****  * ****** *     ****   ****** *** 

consensus_5494#0      --CGCTAGAC--AAAAAGTGC-AGGACATAGCCAACAACAAAAGAAAAAGGAATAACACG 638
consensus_5494#1      ACNGCTAGGACAAANAAGTGCCAGGACATAGGCCNAACCAAGCGAGACAGAACAAAGGAA 719
                         *****    ** ****** ********* *   * ***  ** * ** *  **    

consensus_5494#0      GATCATTAAAATATTTTGTAGTTAAGAGGACCCACTTAACGCATGTGTTGATCAGTGTCA 698
consensus_5494#1      TAACGC-ACGGGGAATCACAGTTACANAN------------------------------- 747
                       * *   *       *   *****                                    

consensus_5494#0      TCGAGTTGTCACTGATAGACATTCACTAAACGCAGTAATGCTAGAAGTATAAGAGGAATT 758
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      TACAGGATAGCTGCCTGATAGTCTAGGACTACTACTATGAGAGAAAAAAAAACAAACACA 818
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      AAACAGGAACAGTAATGTTTGTTTTCTTTTTTTGCATTTGCAGCTGATTTATGAAAGTAA 878
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      CGAAAGAAAACAATATAAAACAAAAACAAAAAAAGCAAAATATATTCTATAGTAACAAGT 938
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      AGAAACTCTTAGGAAAGTAACACAACAAAACAAGAAGAAAATGTCCATTGCAAAATGCTA 998
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      ACAGCGACAATTCGTTACGATTGTCTTCGATGATCAGAAAAATTATTATATATAAAAAGA 1058
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      AAAAAAACATATTATCTTTATAACAAAGAAAATTAACAAAATAAAAGTTAAAAATACACT 1118
consensus_5494#1      ------------------------------------------------------------
                                                                                  

consensus_5494#0      TTT 1121
consensus_5494#1      ---
                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)