These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5498#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTATATTTTGGGTAAAATGTTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATTGTTGACAAAATCTGCTCTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGC] [+] EMBL BM579896 [CCGCCCACGCGTCCGCCCACGCGTCCGTATATTTTGGGTAAAATGTTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATTGTTGACAAAATCTGCTCTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGC] consensusID : consensus_5498#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 681 fasta sequence [CCGTGCTAATGTGCGCTCCCTTTTTTCAGTGCTAATTGTACTGTCGGACTGGCAGGATCGTGCCAGAGTGCTAGAGTGAGTTTTCGGTAGTTGAGCAAGGCAGGGTAGGAGCGAACACAAGCAGGAGCGAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGCTATTCTTG] [+] EMBL BM608498 [CCGTGCTAATGTGCGCTCCCTTTTTTCAGTGCTAATTGTACTGTCGGACTGGCAGGATCGTGCCAGAGTGCTAGAGTGAGTTTTCGGTAGTTGAGCAAGGCAGGGTAGGAGCGAACACAAGCAGGAGCGAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGCTATTCTTG] consensusID : consensus_5498#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence [CCGGGATGATTGTGAAGTGCGGCTTGTTACTTAAAGTGACGGTATATTTTGGGTAAAATGTTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATTGTTGACAAAATCTGCTCTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGT] [+] EMBL BM577991 [CCGGGATGATTGTGAAGTGCGGCTTGTTACTTAAAGTGACGGTATATTTTGGGTAAAATGTTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATTGTTGACAAAATCTGCTCTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCATGTCGGACAGCATTCGCGAGATGTATCAGTTCAGCGTCGTCGATTATTGCATGTTCGGTGGCATGCTGATCCTGTCGGCTGCCTGTGGCATCTATTATGGGTTTTTCAAGCGCTCGACAAACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGAGGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTATTTGCTGGGGTCACGCAAGTTAAAAGCATTCCCGGTGGCGATGAGTCTGCTGGCGGGATACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGT] consensusID : consensus_5498#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CCGCGGACGCGTGGGCAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGCTATTCTTGCCGATGGTTATCTACGTGCCAGCGCTTGCCTTCAATCAAGTAACCGGTTTTAACATTTACGTTATTGGGGCAATCGTGTGCGTCGTTTGCATCTTCTACACACTTCTGGGCGGTATTAAGGCGGTTGTGTTCACCGACGCTTGGCAGGTGGTGGTAATGTTCATCTCGGTCGTCGTGGTCGTGATTATTGGCACGATCGCTCTCGGTGGTCCGGGCGTTATCTGGGACCGGGCGGTGGAAGGCGGTCGGATAGACTTCTTCAACTTCAATCCATCTATGTACGAGCGGCAAACGTTTTGGGCCGTTTTGATTGGCGGTTTCTTCTACTGGACCTCGTACAATGCCGTCAATCAGACGATGGTACAGCGCTACATGTCACTGCCGAATCTAAAGACTGCAAAATTGTACGTAACTGGTGCTTTAACGCTCAAAATGGCACTGGAATGTTGATGCTTC] [+] EMBL BM616488 [CCGCGGACGCGTGGGCAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGTTAAACTCTTCGTACGAATATTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAATCAGATGCTATTCTTGCCGATGGTTATCTACGTGCCAGCGCTTGCCTTCAATCAAGTAACCGGTTTTAACATTTACGTTATTGGGGCAATCGTGTGCGTCGTTTGCATCTTCTACACACTTCTGGGCGGTATTAAGGCGGTTGTGTTCACCGACGCTTGGCAGGTGGTGGTAATGTTCATCTCGGTCGTCGTGGTCGTGATTATTGGCACGATCGCTCTCGGTGGTCCGGGCGTTATCTGGGACCGGGCGGTGGAAGGCGGTCGGATAGACTTCTTCAACTTCAATCCATCTATGTACGAGCGGCAAACGTTTTGGGCCGTTTTGATTGGCGGTTTCTTCTACTGGACCTCGTACAATGCCGTCAATCAGACGATGGTACAGCGCTACATGTCACTGCCGAATCTAAAGACTGCAAAATTGTACGTAACTGGTGCTTTAACGCTCAAAATGGCACTGGAATGTTGATGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5498#0 ---------------CCGCCCACGCGTCCGCCCACGCGTCCGTATATTTTGGGTAAAATG 45 consensus_5498#2 CCGGGATGATTGTGAAGTGCGGCTTGTTACTTAAAGTGACGGTATATTTTGGGTAAAATG 60 consensus_5498#1 ------CCGTGCTAATGTGCGCTCCCTTTTTTCAGTGCTAATTGTACTGTCGG---ACTG 51 consensus_5498#3 ------------------------------------------------------------ consensus_5498#0 TTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATT--GTTGACAAAATCTGCT 103 consensus_5498#2 TTAGTGTTTTGTTGAACTTTTTGGGGATTTAAATGTTTAATT--GTTGACAAAATCTGCT 118 consensus_5498#1 GCAGGATCGTGCCAGAGTGCTAGAG----TGAGTTTTCGGTA--GTTGAGCAAGGCAG-- 103 consensus_5498#3 CCGCGGACGCGTGGGCAATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCC 60 * * * * ***** * consensus_5498#0 CTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCA 163 consensus_5498#2 CTGTGGTGTGTGGTGTTACAAATTCTGAACAGGTTAAGATGTCGTCTCCCAGAAGCACCA 178 consensus_5498#1 ----GGTAGGAGCGAACACAAGC-----AGGAGCGAAGATGTCGTCTCCCAGAAGCACCA 154 consensus_5498#3 GTCTGTACGGTTTACTTACCCGTGTTTTGCTCGCTAAAGT-TAAACTCTTCGTACGAATA 119 * * ** * ** * * *** * * * * consensus_5498#0 TGTCGGACAGCA-TTCGCGAGATGTATCAGTTCAGCGTCGTCGATTAT-TGCATGTTCGG 221 consensus_5498#2 TGTCGGACAGCA-TTCGCGAGATGTATCAGTTCAGCGTCGTCGATTAT-TGCATGTTCGG 236 consensus_5498#1 TGTCGGACAGCA-TTCGCGAGATGTATCAGTTCAGCGTCGTCGATTAT-TGCATGTTCGG 212 consensus_5498#3 TTTGGAGCTACGCTTCAATCCTTACGTACGATCGATGGCGTCAGTAATGTTTGTCATTAA 179 * * * * * *** * * * ** * **** * ** * * * consensus_5498#0 TGGCATGCTGATCCTGTCGGCTGCCTGTGGCAT-CTATTATGGGTTTT---TCAAGCGCT 277 consensus_5498#2 TGGCATGCTGATCCTGTCGGCTGCCTGTGGCAT-CTATTATGGGTTTT---TCAAGCGCT 292 consensus_5498#1 TGGCATGCTGATCCTGTCGGCTGCCTGTGGCAT-CTATTATGGGTTTT---TCAAGCGCT 268 consensus_5498#3 TCAGATGCTATTCTTGCCGATGGTTATCTACGTGCCAGCGCTTGCCTTCAATCAAGTAAC 239 * ***** ** ** ** * * * * * * ** ***** consensus_5498#0 CGACA--AACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGA 335 consensus_5498#2 CGACA--AACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGA 350 consensus_5498#1 CGACA--AACACCAGCAGCAGTAGCAGCGAATGCGAGGATGAGCAGGACCATCTGCCAGA 326 consensus_5498#3 CGGTTTTAACATTTACGTTATTGG-GGCAATCGTGTGCGTCGTTTGCATCTTCTAC-ACA 297 ** **** * * * * ** * * * * * * * * *** * * * consensus_5498#0 GGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTA 395 consensus_5498#2 GGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTA 410 consensus_5498#1 GGCGGGAGTTCCAGCAAAGAAGCCTACCAACACGTTCGGTTCTGCCACGATCGACGAGTA 386 consensus_5498#3 CTTCTGGGCGGTATTAAGGCGGT-TGTGTTCACCGACGCTT--GGCAGGTGGTGGTAATG 354 * * * ** * * * *** ** ** * ** * * * consensus_5498#0 TTTGCTGGGGTCACGCAAGTTAAAAGCATT--CCCGGTGGCGATGAGTCTGCTGGCGGGA 453 consensus_5498#2 TTTGCTGGGGTCACGCAAGTTAAAAGCATT--CCCGGTGGCGATGAGTCTGCTGGCGGGA 468 consensus_5498#1 TTTGCTGGGGTCACGCAAGTTAAAAGCATT--CCCGGTGGCGATGAGTCTGCTGGCGGGA 444 consensus_5498#3 TTCATCTCGGTCGTCGTGGTCGTGATTATTGGCACGATCGCTCTCGGTGGTC---CGGGC 411 ** **** ** * *** * ** * ** * ** * **** consensus_5498#0 TACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACA- 512 consensus_5498#2 TACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACA- 527 consensus_5498#1 TACATTTCTGGCGTGACGATACTGGGGACGCCGGCTGAGATCTACAACTTCGGCACACA- 503 consensus_5498#3 GTTATCTGGGACCGGGCGGTGGAAGGCGGTCGGATAGACTTCTTCAACTTCAATCCATCT 471 ** * * * * ** * ** * * ** *** ******* ** consensus_5498#0 --ATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTAC 570 consensus_5498#2 --ATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTAC 585 consensus_5498#1 --ATACTGGCTGATCGCGGTTCCGATTCTGTTGATGGGTGTTGCCGTCTGTACGGTTTAC 561 consensus_5498#3 ATGTACGAGCGGCAAACGTTTTGGGCCGTTTTGATTGGCGGTTTCTTCTACTGGACCTCG 531 *** ** * ** ** * * ***** ** * * * *** * * consensus_5498#0 TTACCCGTGTTTTGCTCGCTAAAGTTA-AACTCTTCGTACGAATATTTGGAGCTACGCTT 629 consensus_5498#2 TTACCCGTGTTTTGCTCGCTAAAGTTA-AACTCTTCGTACGAATATTTGGAGCTACGCTT 644 consensus_5498#1 TTACCCGTGTTTTGCTCGCTAAAGTTA-AACTCTTCGTACGAATATTTGGAGCTACGCTT 620 consensus_5498#3 TACAATGCCGTCAATCAGACGATGGTACAGCGCTACATGTCACTGCCGAATCTAAAGACT 591 * * * * * * ** * * ** * * * * * * * consensus_5498#0 CAATCCTTACGTACGATCGATGGCGTCA-GTAATGTTTGTCATTAATCAGATGC------ 682 consensus_5498#2 CAATCCTTACGTACGATCGATGGCGT---------------------------------- 670 consensus_5498#1 CAATCCTTACGTACGATCGATGGCGTCA-GTAATGTTTGTCATTAATCAGATGCTATTCT 679 consensus_5498#3 GCAAAATTGTACGTAACTGGTGCTTTAACGCTCAAAATGGCACTGGAATGTTGATGCTTC 651 * ** * * ** * consensus_5498#0 -- consensus_5498#2 -- consensus_5498#1 TG 681 consensus_5498#3 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||