These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5502#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 823 fasta sequence [CCGGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACGCGTCGCACCATACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCCAAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGTATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGTGACTTTCTTTGAGAATTCAAAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCCTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTAATGCGAGAAGCATCAGCAGCAGGAGCAGCTTTGCAACATTGCGGAATGTTATTTCGTCTTCTGCTTACATTACACACGATACGTCGTTTATG-TTTTTTTAGTTACTAGCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCAAAACCAATAGGAGATGCCAGATGTGTGTTTTCCGGATCGTGGAAATCACACACAACCCCCACCCCCTCCCTCATCCCCCTCTCAACACAATAATAGTCCGATTCCCAATAGTTAAGCTCCCGCCAACCTTCCACCTGTCCTGAAATACTAGAAGTTACGCACTTCTACCGTTAAATACAGTCACTTTGCCACCCG] [+] EMBL BM648318 [CCGGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACGCGTCGCACCATACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCCAAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGTATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGTGACTTTCTTTGAGAATTCAAAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCCTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTAATGCGAGAAGCATCAGCAGCAGGAGCAGCTTTGCAACATTGCGGAATGTTATTTCGTCTTCTGCTTACATTACACACGATACGTCGTTTATGTTTTTTTTAGTTACTAGCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCAAAAC ] [+] EMBL BX614157 [ AAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCCTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTAATGCGAGAAGCATCAGCAGCAGGAGCAGCTTTGCAACATTGCGGAATGTTATTTCGTCTTCTGCTTACATTACACACGATACGTCGTTTATG TTTTTTTAGTTACTAGCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCA ] [+] EMBL BM578159 [ ccgG TTTTTTTAGTTACTAGCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCAAAACCAATAGGAGATGCCAGATGTGTGTTTTCCGGATCGTGGAAATCACACACAACCCCCACCCCCTCCCTCATCCCCCTCTCAACACAATAATAGTCCGATTCCCAATAGTTAAGCTCCCGCCAACCTTCCACCTGTCCTGAAATACTAGAAGTTACGCACTTCTACCGTTAAATACAGTCACTTTGCCACCCG] consensusID : consensus_5502#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [GCGAGCGGCCGCACGAGTGCCTGATCTGTGGCATCAGCTTCATCCAGAAGATCAACCTTATCTACCACATCCGCATACACAACGGCGAGCGTCCGTACCGGTGCAACATCTGCCAGAAGTCGTTCATCCAGCAGAGCCATATAAAGAACCATATGAAGGTGCACAAGAAGGACAATCCGCTTGACTGCAGCATGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACGCGTCGCACCACACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCCAAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGTATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGTGACTTTCTTTGAGAATTCAAAAACAAAAAAAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCTTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTA] [+] EMBL BX628403 [GCGAGCGGCCGCACGAGTGCCTGATCTGTGGCATCAGCTTCATCCAGAAGATCAACCTTATCTACCACATCCGCATACACAACGGCGAGCGTCCGTACCGGTGCAACATCTGCCAGAAGTCGTTCATCCAGCAGAGCCATATAAAGAACCATATGAAGGTGCACAAGAAGGACAATCCGCTTGACTGCAGCATGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACGCGTCGCACCACACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCCAAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGTATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGTGACTTTCTTTGAGAATTCAAAAACAAAAAAAAAACCTGTCTTTATCCTTTCCCTTTCCTCACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCTTCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCCTATCACTCTCTGGATTCCCCATCTTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTATAGAGTGCGTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5502#0 ------------------------------------------------------------ consensus_5502#1 GCGAGCGGCCGCACGAGTGCCTGATCTGTGGCATCAGCTTCATCCAGAAGATCAACCTTA 60 consensus_5502#0 ------------------------------------------------------------ consensus_5502#1 TCTACCACATCCGCATACACAACGGCGAGCGTCCGTACCGGTGCAACATCTGCCAGAAGT 120 consensus_5502#0 ------------------------------------------------------------ consensus_5502#1 CGTTCATCCAGCAGAGCCATATAAAGAACCATATGAAGGTGCACAAGAAGGACAATCCGC 180 consensus_5502#0 ----------CCGGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACG 50 consensus_5502#1 TTGACTGCAGCATGTGCGGTAAAAACTACAGCGATCTCAACGAGCTGACCGAGCACTACG 240 * *********************************************** consensus_5502#0 CGTCGCACCATACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCC 110 consensus_5502#1 CGTCGCACCACACGGCCGAGCTGACGTACCGGTGCCAGGCCTGCGGCAAATCGTTCGCCC 300 ********** ************************************************* consensus_5502#0 AAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGT 170 consensus_5502#1 AAGCCAACCATCTCAAGATCCACAAGAAGAACTTCTGCAACAGCAAGTCGAACTAGATGT 360 ************************************************************ consensus_5502#0 ATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGT 230 consensus_5502#1 ATCCTTTCCGTTTCCTTTTTTTCGGTCCTTTTCCCCGCATTTCTTCGTTTGCTGTTCCGT 420 ************************************************************ consensus_5502#0 GACTTTCTTTGAGAATTCAAAAA----------ACCTGTCTTTATCCTTTCCCTTTCCTC 280 consensus_5502#1 GACTTTCTTTGAGAATTCAAAAACAAAAAAAAAACCTGTCTTTATCCTTTCCCTTTCCTC 480 *********************** *************************** consensus_5502#0 ACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCT 340 consensus_5502#1 ACTACCTTTCTTTCTTTCAATCGCATTTTTGTGTGGTGTTCACACACTAAAGAAGAACCT 540 ************************************************************ consensus_5502#0 TCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCC 400 consensus_5502#1 TCCTATATATTAGAAAAAACGATTATACAGTCAGTAGTGTGTCGTCCGGCGGCTAGGTCC 600 ************************************************************ consensus_5502#0 TATCACTCTCTGGATTCCCCATCCTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTA 460 consensus_5502#1 TATCACTCTCTGGATTCCCCATCTTCCCCCCATACCTACCCCGGATCGCGCTAGTTCTTA 660 *********************** ************************************ consensus_5502#0 TAGAGTGCGTGTAATGCGAGAAGCATCAGCAGCAGGAGCAGCTTTGCAACATTGCGGAAT 520 consensus_5502#1 TAGAGTGCGTGTA----------------------------------------------- 673 ************* consensus_5502#0 GTTATTTCGTCTTCTGCTTACATTACACACGATACGTCGTTTATGTTTTTTTAGTTACTA 580 consensus_5502#1 ------------------------------------------------------------ consensus_5502#0 GCACAAAGTTCAAAGTATCGTTACAAACGCTAAGCCCAGAAGCGACCAAAACCAATAGGA 640 consensus_5502#1 ------------------------------------------------------------ consensus_5502#0 GATGCCAGATGTGTGTTTTCCGGATCGTGGAAATCACACACAACCCCCACCCCCTCCCTC 700 consensus_5502#1 ------------------------------------------------------------ consensus_5502#0 ATCCCCCTCTCAACACAATAATAGTCCGATTCCCAATAGTTAAGCTCCCGCCAACCTTCC 760 consensus_5502#1 ------------------------------------------------------------ consensus_5502#0 ACCTGTCCTGAAATACTAGAAGTTACGCACTTCTACCGTTAAATACAGTCACTTTGCCAC 820 consensus_5502#1 ------------------------------------------------------------ consensus_5502#0 CCG 823 consensus_5502#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||