These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5504#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 935 fasta sequence [TCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCAATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAAAAAGCATAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGCCGCCATTGAGCGCGCTTCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGAGCGAGCACGATCGGCACCGCTACACGCACACCGGAGTGCACGCCTACCCCTGCCTGGAGCCTGTGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCCGGCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGATGAAGTTCACCAGCCGGCAGGCGATGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACGCGTGCGACGCGTGCGGCGAGCGGTTCTGGCGCAAGCTGCAGCTGAAGCTGCACAAGGTGCGCCACACCGGCGAGTATCCGCACCGGTGCGAGCACTGCGGCCAGGGGTTCGTGAACGCGCGCACGATGCGGAGCCACCGGTGCCGGCAGAACGCGCACCGCTGCCCGGACTGTGCGCGCGAGTTCCTGCGCTGGTCCGAGCTGGTGGTGCACCGGCGGCTCGAGCATCCGACCCAGTACCGGTGCGACCAGTGCGACAAGCAGTTCAGCACGAAGCGCAACCTGAACCTGCACGGCCGGGTCCATCGCAAGCAGCAGGACGCTGCCGCCGGCAAG] [+] EMBL CNS09DD7 [TCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCAATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAAAAAGCATAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGCCGCCATTGAGCGCGCTTCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGAGCGAGCACGATCGGCACCGCTACACGCACACCGGAGTGCACGCCTACCCCTGCCTGGAGCCTGTGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAG ] [+] EMBL BM597322 [ CCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGA CGAGCACGATCGGCACCGCTACACGCACACCGGAGTGCACGCCTACCCCTGCCTGGAGCC G GACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCCGGCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGATGAAGTTCACCAGCCGGCAGGCGATGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACGCGTGCGACGCGTGCGGCGAGCGGTTCTGGCGCAAGCTGCAGCTGAAGCTGCACAAGGTGCGCCACACCGGCGAGTATCCGCACCGGTGCGAGCACTGCGGCCAGGGGTTCGTGAACGCGCGCACGATGCGGAGCCACCGGTGCCGGCAGAACGCGCACCGCTGCCCGGACTGTGCGCGCGAGTTCCTGCGCTGGTCCGAGCTGGTGGTGCACCGGCGGCTCGAGCATCCGACCCAGTACCGGTGCGACCAGTGCGACAAGCAGTTCAGCACGAAGCGCAACCTGAACCTGCACGGCCGGGTCCATCGCAAGCAGCAGGACGCTGCCGCCGGCAAG] [-] EMBL CNS09DD8 [ GGCCCGAGGTCAACTGCAGCCATCCGAACTGTGCGATGAAGTTCACCAGCCGGCAGGCGTTGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACGCGTGC ] consensusID : consensus_5504#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence [CCGGTGTTGTTTGTTGATGTATTTGTAGTTTCCGCAATACATTTTCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCGCATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAATAAGCGTAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGCCGCCATTGAGCGCGCTGCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGACGAGCACGATCGGCACCGCTACACGCACACCGGAGTGGTAAGTGGCACTGGAACGGGAAATGGGAAGGCGGCAAACCACACACACACACACACACACACACACACACGTTTTGGTTTTTGCTTGCAGCACGCCTACCCCTGCCTGGAGCCGGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCCGGCCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGAT] [+] EMBL BM578196 [CCGGTGTTGTTTGTTGATGTATTTGTAGTTTCCGCAATACATTTTCCAGTGCTACACGTTTTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCGCATCATCTGTCTAAGTTGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAATAAGCGTAGTCCCGTGCGGTCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAACCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGCCGCCATTGAGCGCGCTGCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGTGCGACCACTGCGAGCAAACGTTCAAGCGACGCGACGAGCACGATCGGCACCGCTACACGCACACCGGAGTGGTAAGTGGCACTGGAACGGGAAATGGGAAGGCGGCAAACCACACACACACACACACACACACACACACACGTTTTGGTTTTTGCTTGCAGCACGCCTACCCCTGCCTGGAGCCGGACTGCGGCAAAGCCTACTCGAACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCCGGCCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5504#0 --------------------------------------------TCCAGTGCTACACGTT 16 consensus_5504#1 CCGGTGTTGTTTGTTGATGTATTTGTAGTTTCCGCAATACATTTTCCAGTGCTACACGTT 60 **************** consensus_5504#0 TTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCA-ATCATCTGTCTAAGT 75 consensus_5504#1 TTCGCGGCAAAGAAAAGTGCGCGTTAGAAATTAATTGCGAAGCGCATCATCTGTCTAAGT 120 ******************************************* *************** consensus_5504#0 TGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAAAAAGCATAGTCCCGTGCGG 135 consensus_5504#1 TGTGTTCCGGTGTTGTTGAGTGAGCAAACACGAACAAACAATAAGCGTAGTCCCGTGCGG 180 ***************************************** **** ************* consensus_5504#0 TCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAA 195 consensus_5504#1 TCCCTTTGCGCGATGAGAAAATGGCTCCCTGCTCGACCACCGATCATCAGCACCAAGCAA 240 ************************************************************ consensus_5504#0 CCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGC 255 consensus_5504#1 CCGGCCAGCAATCAGAGCAGGCGATGGAGGGTGCCGTCATCTTGGACGGCAGCGCCCAGC 300 ************************************************************ consensus_5504#0 CGCCATTGAGCGCGCTTCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGT 315 consensus_5504#1 CGCCATTGAGCGCGCTGCTGCCGGTTCAATGTGCCGGCAACCGCAGCCATCGCTACAAGT 360 **************** ******************************************* consensus_5504#0 GCGACCACTGCGAGCAAACGTTCAAGCGACGCGAGCGAGCACGATCGGCACCGCTACACG 375 consensus_5504#1 GCGACCACTGCGAGCAAACGTTCAAGCGACGCGA-CGAGCACGATCGGCACCGCTACACG 419 ********************************** ************************* consensus_5504#0 CACACCGGAGTGCACGCCTACCCCTGCCTGGAGCCTGTGACTGCGGCAAAGCCTACTCGA 435 consensus_5504#1 CACACCGGAGTGGTAAGTGGCACTGGAACGGGAAATGGGAAGGCGGCAAACCACACACAC 479 ************ * * * ** ** ** ******** * ** * consensus_5504#0 ACCGGTCCCATCTGCTGCGGCACGTGCGGGCCTGCCATCTGGAGAGTGCCGGTACCGCCC 495 consensus_5504#1 ACACA-CACACACACACACACACGTTTTGGTTT-TTGCTTGCAGCACGCC--TACC-CCT 534 ** * ** * ***** ** * ** ** *** **** ** consensus_5504#0 GGCCCGAGGTCGACTGCAGCCATCCGAACTGTGCGATGAAGTTCACCAGCCGGCAGGCGA 555 consensus_5504#1 GCCTGGAGCCGGACTGCGGCAAAGCCTACT---CGAACCGGTCCCATCTGCTGCGGCACG 591 * * *** ****** ** * * *** *** ** * * ** * consensus_5504#0 TGAAGCGCCACTACCAGACGAAGCACGTGCTGGGCAAACCGTACGCGTGCGACGCGTGCG 615 consensus_5504#1 TGCGGGCCTGCCATCTGGAGA-----GTGCCGGTACCGCCCGGCCCCGAGGTCGACTGCA 646 ** * * * * * * ** **** ** ** * * * ** *** consensus_5504#0 GCGAGCGGTTCTGGCGCAAGCTGCAGCTGAAGCTGCACAAGGTGCGCCACACCGGCGAGT 675 consensus_5504#1 GCCATCCGAACTG-TGCGAT---------------------------------------- 665 ** * * * *** ** * consensus_5504#0 ATCCGCACCGGTGCGAGCACTGCGGCCAGGGGTTCGTGAACGCGCGCACGATGCGGAGCC 735 consensus_5504#1 ------------------------------------------------------------ consensus_5504#0 ACCGGTGCCGGCAGAACGCGCACCGCTGCCCGGACTGTGCGCGCGAGTTCCTGCGCTGGT 795 consensus_5504#1 ------------------------------------------------------------ consensus_5504#0 CCGAGCTGGTGGTGCACCGGCGGCTCGAGCATCCGACCCAGTACCGGTGCGACCAGTGCG 855 consensus_5504#1 ------------------------------------------------------------ consensus_5504#0 ACAAGCAGTTCAGCACGAAGCGCAACCTGAACCTGCACGGCCGGGTCCATCGCAAGCAGC 915 consensus_5504#1 ------------------------------------------------------------ consensus_5504#0 AGGACGCTGCCGCCGGCAAG 935 consensus_5504#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||