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Anopheles gambiae
cluster # 5505 cluster # 5505       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5505#0 length = 988 sequences # 2  
consensus_5505#1 length = 726 sequences # 2  

consensusID : consensus_5505#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 988
fasta sequence
                              [CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAAATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGGCCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGAATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAGTGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTGTCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAACAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAAAAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA]

[+] EMBL BM578364             [CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAAATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGT                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CNS09JKK             [                                                                          CAGCTAAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATGAACCTGTTACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCAGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAGGACTACGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGGCCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGAATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAGTGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTGTCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAACAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAAAAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA]


>consensus_5505#0 CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAAATTG AGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATT CTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATC GGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAA AGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAA GCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGAC GTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAG ACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAATACGTTTGTT CAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTG CTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTG AAAGTGCCGTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGGCCATTGTTGGGCTTG GGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGAATCCAAACCATGCGCT ACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAGTGTAGCGGCAAGCCCT CTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTGTCCTAAACGCTTTTGT ATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAACAAAGAAGTTTCAATT TTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAAAAGAAATAGAAGGAAA CACTAGAATTAAACTAAAAGAAATGGAA



consensusID : consensus_5505#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 726
fasta sequence
                              [AGGCAAGAATTCCGCACGAGTGTCACATTCGGCTTTTGTTTTAANCATTGAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAATTTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTGTTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGANCTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCCCGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGGGCCATTGTTACAGGCTGCTGCTTAGGCTTCGCGTANAGGTAAGGAAGNAGGAATCCANAAGCGATTGCGCTACGTTT]

[+] EMBL BX468214             [AGGCAAGAATTCCGCACGAGTGTCACATTCGGCTTTTGTTTTAANCATTGAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAATTTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTGTTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGANCTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCCCGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGGGCCATTGTTACAGGCTGCTGCTTAGGCTTCGCGTANAGGTAAGGAAGNAGGAATCCANAAGCGATTGCGCTACGTTT]
[+] EMBL BM598335             [         ccgccCACGCGT CCGCATTCGGCTCTTGTTTTAA AATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAA ATACGTTTGTTCAAAAAC TTCGTGCTTGGGCCA TTTCTACCAACCAGAGACGGTTT GCACTAA A CTCACTGCTA GCCTTGCTGCGGAAGGAAAC AAAC TTGAA GGTGCCG AAAAATGCCCGAACGCTGCTG AAAGTGCC GTCC AAGACGAGTACGTAACAAATCGATCCGACCA GGCCATTGTTAC TGCTGCTGCTTA GCTTCGCGTTTTTTTAAGGAAGCA GAATC                      ]


>consensus_5505#1 AGGCAAGAATTCCGCACGAGTGTCACATTCGGCTTTTGTTTTAANCATTGAGTGTTCAAT CGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAATTTTGTCATTTC GTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATC GGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGAAAGTGCAATCG CACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAG GTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCG GTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACG ATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTGTTCAAAAACGT TCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGANCTCACTGCTAG GCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCCCGAACGCTGCT GAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGGGCCATTGTTAC AGGCTGCTGCTTAGGCTTCGCGTANAGGTAAGGAAGNAGGAATCCANAAGCGATTGCGCT ACGTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5505#0      CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAA-ATT 59
consensus_5505#1      ----------AGGCAAGAATTCCGCACGAGTG-TCACATTCGGCTTTTGTTTTAANCATT 49
                                  *   * *  * * *** * * ************ *********  ***

consensus_5505#0      GAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAAT 119
consensus_5505#1      GAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAAT 109
                      ************ ******* ******************* * ***** ***********

consensus_5505#0      TCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAAT 179
consensus_5505#1      TTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAAT 169
                      * **********************************************************

consensus_5505#0      CGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGA 239
consensus_5505#1      CGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGA 229
                      ************************ ***************** *****************

consensus_5505#0      AAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGA 299
consensus_5505#1      AAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGA 289
                      ******************************* ****************************

consensus_5505#0      AGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGA 359
consensus_5505#1      AGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGA 349
                      ************************************************************

consensus_5505#0      CGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGA 419
consensus_5505#1      CGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGA 409
                      ************************************************************

consensus_5505#0      GACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAA-TACGTTTG 478
consensus_5505#1      GACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTG 469
                      ***************************************** ********  ********

consensus_5505#0      TTCAAAAAC-TTCGTGCTTGGGCCA-TTTCTACCAACCAGAGACGGTTT-GCACTAA--A 533
consensus_5505#1      TTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGAN 529
                      ********* *************** *********************** *******   

consensus_5505#0      CTCACTGCTAG-CCTTGCTGCGGAAGGAAACAAA---CTTGAAGGTGCCGAAAAA-TGCC 588
consensus_5505#1      CTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCC 589
                      *********** ******************* **    *  * ******* **** ****

consensus_5505#0      CGAACGCTGCTGAAA-GTGCC--GTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGG 645
consensus_5505#1      CGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGG 649
                      *************** *****  * * *** ************* ********** ****

consensus_5505#0      -CCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGA 704
consensus_5505#1      GCCATTGTTA----CAGGCTGCTGCT-----TAGGCTTCGCGTANAGGTAAGGAAGNAGG 700
                       ********       ***  *****     *  *********     ******** ** 

consensus_5505#0      ATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAG 764
consensus_5505#1      A----ATCCANAAGCGATTGCG-CTACGTTT----------------------------- 726
                      *    * ***   ** * *  *  *   ***                             

consensus_5505#0      TGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTG 824
consensus_5505#1      ------------------------------------------------------------
                                                                                  

consensus_5505#0      TCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAA 884
consensus_5505#1      ------------------------------------------------------------
                                                                                  

consensus_5505#0      CAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAA 944
consensus_5505#1      ------------------------------------------------------------
                                                                                  

consensus_5505#0      AAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA 988
consensus_5505#1      --------------------------------------------
                                                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)