These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5505#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 988 fasta sequence [CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAAATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGGCCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGAATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAGTGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTGTCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAACAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAAAAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA] [+] EMBL BM578364 [CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAAATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGT ] [+] EMBL CNS09JKK [ CAGCTAAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATGAACCTGTTACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCAGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAGGACTACGGATCAAATACGTTTGTTCAAAAACTTCGTGCTTGGGCCATTTCTACCAACCAGAGACGGTTTGCACTAAACTCACTGCTAGCCTTGCTGCGGAAGGAAACAAACTTGAAGGTGCCGAAAAATGCCCGAACGCTGCTGAAAGTGCCGTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGGCCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGAATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAGTGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTGTCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAACAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAAAAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA] consensusID : consensus_5505#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 726 fasta sequence [AGGCAAGAATTCCGCACGAGTGTCACATTCGGCTTTTGTTTTAANCATTGAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAATTTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTGTTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGANCTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCCCGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGGGCCATTGTTACAGGCTGCTGCTTAGGCTTCGCGTANAGGTAAGGAAGNAGGAATCCANAAGCGATTGCGCTACGTTT] [+] EMBL BX468214 [AGGCAAGAATTCCGCACGAGTGTCACATTCGGCTTTTGTTTTAANCATTGAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAATTTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTGTTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGANCTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCCCGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGGGCCATTGTTACAGGCTGCTGCTTAGGCTTCGCGTANAGGTAAGGAAGNAGGAATCCANAAGCGATTGCGCTACGTTT] [+] EMBL BM598335 [ ccgccCACGCGT CCGCATTCGGCTCTTGTTTTAA AATTGAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAATTCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAATCGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGAAAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGAAGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGACGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGAGACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAA ATACGTTTGTTCAAAAAC TTCGTGCTTGGGCCA TTTCTACCAACCAGAGACGGTTT GCACTAA A CTCACTGCTA GCCTTGCTGCGGAAGGAAAC AAAC TTGAA GGTGCCG AAAAATGCCCGAACGCTGCTG AAAGTGCC GTCC AAGACGAGTACGTAACAAATCGATCCGACCA GGCCATTGTTAC TGCTGCTGCTTA GCTTCGCGTTTTTTTAAGGAAGCA GAATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5505#0 CCGCGCGTTCTTGATCGCACACGGTACGGGGGATCACATTCGGCTCTTGTTTTAAA-ATT 59 consensus_5505#1 ----------AGGCAAGAATTCCGCACGAGTG-TCACATTCGGCTTTTGTTTTAANCATT 49 * * * * * *** * * ************ ********* *** consensus_5505#0 GAGTGTTCAATCTTACAGCTCAAGAAGTAGTTAAATCTAGCCTGTAGCAAGTGCGATAAT 119 consensus_5505#1 GAGTGTTCAATCGTACAGCTAAAGAAGTAGTTAAATCTAGGCCGTAGCTAGTGCGATAAT 109 ************ ******* ******************* * ***** *********** consensus_5505#0 TCTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAAT 179 consensus_5505#1 TTTGTCATTTCGTAAGGTGCGAATCAAATAATCAATGGCTCCAGGTGGATATGGTACAAT 169 * ********************************************************** consensus_5505#0 CGGCAGCAATCGGAAGCGTTTGCTAGATGCGGAGGAACGGGAGACGAAACTCCGTCCGGA 239 consensus_5505#1 CGGCAGCAATCGGAAGCGTTTGCTTGATGCGGAGGAACGGGACACGAAACTCCGTCCGGA 229 ************************ ***************** ***************** consensus_5505#0 AAGTGCAATCGCACCGACAAGCAACTCTCCATCACCTGATAAACCTGTAACGATGGCGGA 299 consensus_5505#1 AAGTGCAATCGCACCGACAAGCAACTCTCCAGCACCTGATAAACCTGTAACGATGGCGGA 289 ******************************* **************************** consensus_5505#0 AGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGA 359 consensus_5505#1 AGCTTCGAAAGGTGTACCGCAGCAATCTGTACCGTCCACTGATAGCTTGGAGGAAAGCGA 349 ************************************************************ consensus_5505#0 CGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGA 419 consensus_5505#1 CGTCGACGTCGGTAGCGAAGACGAATGGAGCATTTTTGACAGTTCTGATCCATACAGTGA 409 ************************************************************ consensus_5505#0 GACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTGTGGATCAAA-TACGTTTG 478 consensus_5505#1 GACTGATGACGATACTGAAGACAGTACAGATGATGAAGACTATGGATCAANATACGTTTG 469 ***************************************** ******** ******** consensus_5505#0 TTCAAAAAC-TTCGTGCTTGGGCCA-TTTCTACCAACCAGAGACGGTTT-GCACTAA--A 533 consensus_5505#1 TTCAAAAACGTTCGTGCTTGGGCCAGTTTCTACCAACCAGAGACGGTTTAGCACTAAGAN 529 ********* *************** *********************** ******* consensus_5505#0 CTCACTGCTAG-CCTTGCTGCGGAAGGAAACAAA---CTTGAAGGTGCCGAAAAA-TGCC 588 consensus_5505#1 CTCACTGCTAGGCCTTGCTGCGGAAGGAAACNAAGCGTTGAAGGGTGCCGNAAAAATGCC 589 *********** ******************* ** * * ******* **** **** consensus_5505#0 CGAACGCTGCTGAAA-GTGCC--GTCCAAGACGAGTACGTAACAAATCGATCCGAGCAGG 645 consensus_5505#1 CGAACGCTGCTGAAAAGTGCCAGGCCAAAGCCGAGTACGTAACAGATCGATCCGACCAGG 649 *************** ***** * * *** ************* ********** **** consensus_5505#0 -CCATTGTTGGGCTTGGGCCACTGCTGCTGCTTAGCTTCGCGTTTTTTTAAGGAAGCAGA 704 consensus_5505#1 GCCATTGTTA----CAGGCTGCTGCT-----TAGGCTTCGCGTANAGGTAAGGAAGNAGG 700 ******** *** ***** * ********* ******** ** consensus_5505#0 ATCCAAACCATGCGCTACTTTGGTTGTATTTTCTTCATTGGTGGGTCTGCTCCTGTACAG 764 consensus_5505#1 A----ATCCANAAGCGATTGCG-CTACGTTT----------------------------- 726 * * *** ** * * * * *** consensus_5505#0 TGTAGCGGCAAGCCCTCTACTGTGGCCTAGTTGCATGTGAGTACCAAGCAATGGTTTTTG 824 consensus_5505#1 ------------------------------------------------------------ consensus_5505#0 TCCTAAACGCTTTTGTATTAGAACTTAATCGCTGGATGTCTGGTGCAAATCCAGATAAAA 884 consensus_5505#1 ------------------------------------------------------------ consensus_5505#0 CAAAGAAGTTTCAATTTTGATTACGCGACATGATTGCTAACACACTAGAAGGGGCACTAA 944 consensus_5505#1 ------------------------------------------------------------ consensus_5505#0 AAGAAATAGAAGGAAACACTAGAATTAAACTAAAAGAAATGGAA 988 consensus_5505#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||