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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence
[CCAGAATCGCCACGAGGTCATAATCTCAAAATGGAGTGTGAAAAACTAGCTCAAGACAAAACGGAAATGCAGCGACATTATGTAATGTACTACGAAATGTCATACGGCCTTAACGTTGAAATGCATAAACAGACAGAAATATCAAAAAGATTAAATGCAATTATCACGCAGATAGTACCGTTTCTGTCCCAAGAGCATCAACAGCAAGTACTAACAGCAGTTGAACGAGCTAAACAAATTACAATGTCTGAATTAAATAGTGTGATAGGGCAACAACAACGTCCTGATTTACCTCGGTTATTACAACAGATGCATGCTCAACAAATTCCAGGTGCCCATGGAGCGCCTCCGATACCTGTTGGTATGCCTCATCCTAGCCTTGGACCAGGAGCACTAGGAGGTCCATTAGGCTCTTGGTAGCACGCCTCCTCAAGCATCCGTTGGCAATACTCAACAAACAGGAACTTCACAGACCCGAAGAATCCAAAAGCAGCAATAGTAAGTATAATGCCATTGGATGATAGACACAGAAGCTCAAATTTCTCCTTTCAGATCGCGATAANATATCGCCCAAGAACACCAGAATCTACACATGAATTGAACGAAGGTTAAGGAACAGAAGACAANAGACTTGGGGACATTCCTGAATGGANGAAAAAGTCGGGATCAGGAATTTAAGTGGGTTGGCATTGATTGCCAGTCTGAGAAACCGAATCCCAATTGGAGTTCCCAANTANACCCCAAATNCGACCATCGCGTTAATTGGGGAAACNCAGAGTATCGGCCCCCGGTGGAGANATGGGGTNGGATGG]
[+] EMBL BX467322 [CCAGAATCGCCACGAGGTCATAATCTCAAAATGGAGTGTGAAAAACTAGCTCAAGACAAAACGGAAATGCAGCGACATTATGTAATGTACTACGAAATGTCATACGGCCTTAACGTTGAAATGCATAAACAGACAGAAATATCAAAAAGATTAAATGCAATTATCACGCAGATAGTACCGTTTCTGTCCCAAGAGCATCAACAGCAAGTACTAACAGCAGTTGAACGAGCTAAACAAATTACAATGTCTGAATTAAATAGTGTGATAGGGCAACAACAACGTCCTGATTTACCTCGGTTATTACAACAGATGCATGCTCAACAAATTCCAGGTGCCCATGGAGCGCCTCCGATACCTGTTGGTATGCCTCATCCTAGCCTTGGACCAGGAGCACTAGGAGGTCCATTAGGCTCTTGGTAGCACGCCTCCTCAAGCATCCGTTGGCAATACTCAACAAACAGGAACTTCACAGACCCGAAGAATCCAAAAGCAGCAATAGTAAGTATAATGCCATTGGATGATAGACACAGAAGCTCAAATTTCTCCTTTCAGATCGCGATAANATATCGCCCAAGAACACCAGAATCTACACATGAATTGAACGAAGGTTAAGGAACAGAAGACAANAGACTTGGGGACATTCCTGAATGGANGAAAAAGTCGGGATCAGGAATTTAAGTGGGTTGGCATTGATTGCCAGTCTGAGAAACCGAATCCCAATTGGAGTTCCCAANTANACCCCAAATNCGACCATCGCGTTAATTGGGGAAACNCAGAGTATCGGCCCCCGGTGGAGANATGGGGTNGGATGG]
consensusID : consensus_5508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CCGCCCACGCGTCCGGAAACGTTTAGTGTCGTAGATCAACTTTAGCAATTTTTTCGGTCCATCTGGCTTATGTTGCGTATGTTTCCGTAGGATAGTTGAAGTTGATAAAGTATGCACCGGCTCGTTAATATAATTATTACATTACTTTTACACTTCTGTATAGTGAAGCAATTGTTGACCTATATTGTAGTTTCGAAGAAAAAAAAATACACACACTTTTCGGGTGTGTGATTTTGTAAGTTCGTGTTTGAAGCTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAGGAACGCCTAACGTGGAGGTGTATATAGAGCGCAGTCAGGATAATTTGAAGGCGTCCGTACACCCTCCGATATGTATCCTAATTCAGGCATAAACGCGGCGGCGGTCGCGGCCCGCCATCCGGGTCCACCGCAGTCTGCACAGCCATTCAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAGAATTTAATTTTCTACAGGCACAGTATCATAATCTCAAAATGGAGTGTGAAAAACTAGCTCAAGACAAAACGGAAATGCAGCGACATTATGTAATGTACTACGAAATGTCATACGGCCTTAACGTTGAAATGCATAAACAGACAGAAATATCAAAAAGATTAAATGCAATTATCACGCAGATAGTACCGTTTCTGTCCCAAGAGCATCAACAGCAAGTACT]
[+] EMBL BM578500 [CCGCCCACGCGTCCGGAAACGTTTAGTGTCGTAGATCAACTTTAGCAATTTTTTCGGTCCATCTGGCTTATGTTGCGTATGTTTCCGTAGGATAGTTGAAGTTGATAAAGTATGCACCGGCTCGTTAATATAATTATTACATTACTTTTACACTTCTGTATAGTGAAGCAATTGTTGACCTATATTGTAGTTTCGAAGAAAAAAAAATACACACACTTTTCGGGTGTGTGATTTTGTAAGTTCGTGTTTGAAGCTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAGGAACGCCTAACGTGGAGGTGTATATAGAGCGCAGTCAGGATAATTTGAAGGCGTCCGTACACCCTCCGATATGTATCCTAATTCAGGCATAAACGCGGCGGCGGTCGCGGCCCGCCATCCGGGTCCACCGCAGTCTGCACAGCCATTCAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAGAATTTAATTTTCTACAGGCACAGTATCATAATCTCAAAATGGAGTGTGAAAAACTAGCTCAAGACAAAACGGAAATGCAGCGACATTATGTAATGTACTACGAAATGTCATACGGCCTTAACGTTGAAATGCATAAACAGACAGAAATATCAAAAAGATTAAATGCAATTATCACGCAGATAGTACCGTTTCTGTCCCAAGAGCATCAACAGCAAGTACT]
consensusID : consensus_5508#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[CCGATCATTACGTAGCACTTCGTGATCGTGTTTCTTTGTGTTGTGTTACCAATTTGTTTGACTTGCCGAGAAAGATTGGTATTTATCTGCAAAGTTGCTTTTGCGAATGTTTGCGGCATGGAAAAACGTAGCATTAATGAGATTCAAGTATGTGCAGATTGCGTAGGGTCAGTGCGAGTGGTATAAGTGATTAGCGTGCGACGGCGAATGTTGAAATCCAACAAAAAGATATATCGTTTCCCCAACTTGTTTTATTTGGTCAAAATAATGCGTGATTCGTACGGTTATCTGTTCATTGGTCAATCTTGAAATGAAGCAATTGTTGACCTATATTGTAGTTTCGAAGAAAAAAAAATACACACACTTTTCGGGTGTGGGATTTTGTAAGTTCGTGTTTGAAGCTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAGGAACGCCTAACCGTGGAGGTGTATATAGAGCGCAGTCAGGATAATTTGGAAGGCGTCCGTACACCCTCCGATATGTATCCTAATTCAGGCATAAACCGCCGGCGGCGGTCGCGGCCCGCCATCCGGGGTCCACCGCAGTCTGCACAGCCATTCAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAGAATTTAATTTTCTACAGGCACAGTATCATAATCTCAAAATGGAGTGTGAAAAACTAGC]
[+] EMBL BM592171 [CCGATCATTACGTAGCACTTCGTGATCGTGTTTCTTTGTGTTGTGTTACCAATTTGTTTGACTTGCCGAGAAAGATTGGTATTTATCTGCAAAGTTGCTTTTGCGAATGTTTGCGGCATGGAAAAACGTAGCATTAATGAGATTCAAGTATGTGCAGATTGCGTAGGGTCAGTGCGAGTGGTATAAGTGATTAGCGTGCGACGGCGAATGTTGAAATCCAACAAAAAGATATATCGTTTCCCCAACTTGTTTTATTTGGTCAAAATAATGCGTGATTCGTACGGTTATCTGTTCATTGGTCAATCTTGAAATGAAGCAATTGTTGACCTATATTGTAGTTTCGAAGAAAAAAAAATACACACACTTTTCGGGTGTGGGATTTTGTAAGTTCGTGTTTGAAGCTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAGGAACGCCTAACCGTGGAGGTGTATATAGAGCGCAGTCAGGATAATTTGGAAGGCGTCCGTACACCCTCCGATATGTATCCTAATTCAGGCATAAACCGCCGGCGGCGGTCGCGGCCCGCCATCCGGGGTCCACCGCAGTCTGCACAGCCATTCAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAGAATTTAATTTTCTACAGGCACAGTATCATAATCTCAAAATGGAGTGTGAAAAACTAGC]
consensusID : consensus_5508#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[CCGGCCGTGGCCGAAGCTGGTAGCATCGCTCCCTATTCTGTGAATTTTGTGGAAACGTTTAGTGGCGTAGATCAACTTTAGCAATTTTTTCGGTCCATCTGGCTTATGTTGCTGAAGCAATTGTTGACCTATATTGTAGTTTCGAAGAAAAAAAAAATACACACACTTTTCGGGTGTGTGATTTTGTAAGTTCGTGTTTGAAGCTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAGGAACGCCTAACGTGGAGGTGTATATAGAGCGCAGTCAGGATAATTTGAAGGCGTCCGTACACCCTCCGATATGTATCCTAATTCAGGCATAAACGCAGCGGCGGTCGCGGCCCGCCATCCGGGTCCACCGCAGTCTGCACAGCCATTCAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAGAATTTAATTTTCTACAGGCACAGTATCATAATCTCAAAATGGAGTGTGAAAAACTAGCTCAAGACAAAACGGAAATGCAGCGACATTATGTAA]
[+] EMBL BM608588 [CCGGCCGTGGCCGAAGCTGGTAGCATCGCTCCCTATTCTGTGAATTTTGTGGAAACGTTTAGTGGCGTAGATCAACTTTAGCAATTTTTTCGGTCCATCTGGCTTATGTTGCTGAAGCAATTGTTGACCTATATTGTAGTTTCGAAGAAAAAAAAAATACACACACTTTTCGGGTGTGTGATTTTGTAAGTTCGTGTTTGAAGCTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAGGAACGCCTAACGTGGAGGTGTATATAGAGCGCAGTCAGGATAATTTGAAGGCGTCCGTACACCCTCCGATATGTATCCTAATTCAGGCATAAACGCAGCGGCGGTCGCGGCCCGCCATCCGGGTCCACCGCAGTCTGCACAGCCATTCAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAGAATTTAATTTTCTACAGGCACAGTATCATAATCTCAAAATGGAGTGTGAAAAACTAGCTCAAGACAAAACGGAAATGCAGCGACATTATGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5508#2 CCGATCATTACGTAGCACTTCGTGATCGTGTTTCTTTGTGTTGTGTTACCAATTTGTTTG 60
consensus_5508#3 ------------------------------------------------------------
consensus_5508#1 ------------------------------------------------------------
consensus_5508#0 ------------------------------------------------------------
consensus_5508#2 ACTTGCCGAGAAAGATTGGTATTTATCTGCAAAGTTGCTTTTGCGAATGTTTGCGGCATG 120
consensus_5508#3 ------------------------------------------------------------
consensus_5508#1 ------------------------------------------------------------
consensus_5508#0 ------------------------------------------------------------
consensus_5508#2 GAAAAACGTAGCATTAATGAGATTCAAGTATGTGCAGATTGCGTAGGGTCAGTGCGAGTG 180
consensus_5508#3 ------------------------------------------------------------
consensus_5508#1 ----------------------------------CCGCCCACGC-GTCCGGAAACGTTTA 25
consensus_5508#0 -----------------------------CCAGAATCGCCACGAGGTCATAATCTCAAAA 31
consensus_5508#2 GTATAAGTGATTAGCGTGCGACGGCGAATGTTGAAATCCAACA-AAAAGATATATCGTTT 239
consensus_5508#3 --------------------CCGGCCGTGGCCGAAG-CTGGTA-GCATCGCTCCCTATTC 38
consensus_5508#1 GTGTCGTAGATCAACTTTAGCAATTTTTTCGGTCCATCTGGCTTATGTTGCGTATGTTTC 85
consensus_5508#0 TGGAGTGTGAAAAACTAGCTCAAGACAAAACGGAAATGCAGCG-ACATTATGTAATGTAC 90
*
consensus_5508#2 CCCCAACTTGTTTTATTTGGTCAAAATAATGCGTGA---TTCGTACGGTTATCTGTTCAT 296
consensus_5508#3 TGTGAATTTTGTGGAAACGTTTAGTGGCGTAGATCAACTTTAGCAATTTTTTCGGTCCAT 98
consensus_5508#1 CGTAGGATAGTTGAAGTTGATAAAGTATGCACCGGCTCGTTAATATAATTATTACATTAC 145
consensus_5508#0 TACGAAATGTCATACGGCCTTAACGTTGAAATGCATAAACAGACAGAAATATCAAAAAGA 150
* * * * * *
consensus_5508#2 -TGGTCAATCTTGAA--ATGAA----GCAATTGTTGACCTA----TATTGTAGTTTCGAA 345
consensus_5508#3 CTGGCTTATGTTGC----TGAA----GCAATTGTTGACCTA----TATTGTAGTTTCGAA 146
consensus_5508#1 TTTTACACTTCTGTATAGTGAA----GCAATTGTTGACCTA----TATTGTAGTTTCGAA 197
consensus_5508#0 TTAAATGCAATTATCACGCAGATAGTACCGTTTCTGTCCCAAGAGCATCAACAGCAAGTA 210
* * * * ** ** ** * ** * *
consensus_5508#2 GAAAAAAAAA-TACACACACTTTTCGGGTGT--GGGATTTTGTAAGTTCGTGTT-TGAAG 401
consensus_5508#3 GAAAAAAAAAATACACACACTTTTCGGGTGT--GTGATTTTGTAAGTTCGTGTT-TGAAG 203
consensus_5508#1 GAAAAAAAAA-TACACACACTTTTCGGGTGT--GTGATTTTGTAAGTTCGTGTT-TGAAG 253
consensus_5508#0 CTAACAGCAGTTGAACGAGCTAAACAAATTACAATGTCTGAATTAAATAGTGTGATAGGG 270
** * * * ** ** * * * * * * * **** * *
consensus_5508#2 CTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAG--GAACGCCTAACC--GTGGA 457
consensus_5508#3 CTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAG--GAACGCCTAAC---GTGGA 258
consensus_5508#1 CTGCGCAAACATTGTGGTGTGATAGTGTGTTAATAAAAG--GAACGCCTAAC---GTGGA 308
consensus_5508#0 CAACAACAACGTCCTGATTTACCTCGGTTATTACAACAGATGCATGCTCAACAAATTCCA 330
* * *** * ** * * ** * * ** ** * * ** *** * *
consensus_5508#2 GGTGTATATAGAGCGCAGTCAGGATAATTTGGAAGGCGTCCGTACACCCTCCGATATGTA 517
consensus_5508#3 GGTGTATATAGAGCGCAGTCAGGATAATTTG-AAGGCGTCCGTACACCCTCCGATATGTA 317
consensus_5508#1 GGTGTATATAGAGCGCAGTCAGGATAATTTG-AAGGCGTCCGTACACCCTCCGATATGTA 367
consensus_5508#0 GGTGCCCATGGAGCGCCTCCGATACCTGTTGGTATGCCTCATCCTAGCCTTGGACCAGGA 390
**** ** ****** * * *** * ** ** * *** ** * *
consensus_5508#2 TC-CTAATTCAGGCAT-AAACCGCCGGCGGCGGTCGCGGCCCGCCATCCGGGGTCCAC-C 574
consensus_5508#3 TC-CTAATTCAGGCAT-AAACG--CAGCGGCGGTCGCGGCCCGCCATCCGGG-TCCAC-C 371
consensus_5508#1 TC-CTAATTCAGGCAT-AAACG--CGGCGGCGGTCGCGGCCCGCCATCCGGG-TCCAC-C 421
consensus_5508#0 GCACTAGGAGGTCCATTAGGCTCTTGGTAGCACGCCTCCTCAAGCATCCGTTGGCAATAC 450
* *** *** * * * ** * * ****** * * *
consensus_5508#2 GCAGTCTGCACAGCCATT-CAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAG 633
consensus_5508#3 GCAGTCTGCACAGCCATT-CAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAG 430
consensus_5508#1 GCAGTCTGCACAGCCATT-CAAATTCACTATAACTGAAAACTGTGATAGGATAAAAGAAG 480
consensus_5508#0 TCAACAAACAGGAACTTCACAGACCCGAAGAATCCAAAAGCAGCAATAGTA----AGTAT 506
** ** * * ** * * * * *** * * **** * ** *
consensus_5508#2 AATTTAATTTTCT-ACAGGCACAGTATCATAA---TCTCAAAATGGAGTGTGAAAAACTA 689
consensus_5508#3 AATTTAATTTTCT-ACAGGCACAGTATCATAA---TCTCAAAATGGAGTGTGAAAAACTA 486
consensus_5508#1 AATTTAATTTTCT-ACAGGCACAGTATCATAA---TCTCAAAATGGAGTGTGAAAAACTA 536
consensus_5508#0 AATGCCATTGGATGATAGACACAGAAGCTCAAATTTCTCCTTTCAGATCGCGATAANATA 566
*** *** * * ** ***** * * ** **** ** * ** ** **
consensus_5508#2 --GC-------------------------------------------------------- 691
consensus_5508#3 --GCTCAAGACAAAACGGAAATGCAGCGACATTATGTAA--------------------- 523
consensus_5508#1 --GCTCAAGACAAAACGGAAATGCAGCGACATTATGTAATGTACTACGAAATGTCATACG 594
consensus_5508#0 TCGCCCAAGAACACCAGAATCTACACATGAATTGAACGAAG-GTTAAGGAACAGAAGACA 625
**
consensus_5508#2 ------------------------------------------------------------
consensus_5508#3 ------------------------------------------------------------
consensus_5508#1 GCCTTAACGTTGAAATGCATAAACAGACAGAAATATCAAAAAGATTAAATGCAATTATCA 654
consensus_5508#0 ANAGACTTGGGGACATTCCTGAATGGANGAAAAAGTCGGGATCAGGAATTTAAGTGGGTT 685
consensus_5508#2 ------------------------------------------------------------
consensus_5508#3 ------------------------------------------------------------
consensus_5508#1 CGCAGATAGTACCGTTTCTGTCCCAAGAGCATCAACAGCAAGTACT-------------- 700
consensus_5508#0 GGCATTGATTGCCAGTCTGAGAAACCGAATCCCAATTGGAGTTCCCAANTANACCCCAAA 745
consensus_5508#2 ------------------------------------------------------------
consensus_5508#3 ------------------------------------------------------------
consensus_5508#1 ------------------------------------------------------------
consensus_5508#0 TNCGACCATCGCGTTAATTGGGGAAACNCAGAGTATCGGCCCCCGGTGGAGANATGGGGT 805
consensus_5508#2 -------
consensus_5508#3 -------
consensus_5508#1 -------
consensus_5508#0 NGGATGG 812
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||