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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5513#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 963 fasta sequence
[GACCCACGCGTCCGCCCACGCGTCCGCGAACCGTCCGGACGTGTATGCGTGTGTGCCGACACTTTCGGGTCTGTGACAACGGTGTGTGTTGTTTCGCTAAATGTGATAAAACAAAAGCGTGCAGTATGACGTCGAGAAGCGCTCGGAATGGCCAGGGAACGGCCTGGGAGCATAGTTAGCATTAGGCCAGCATAGTTCGCCAATCAACCTTTCCGGTGTGTTGTGACCAAAAAAAAAAAAAAAAATCTCCTAAATAAGGAAGAAGAAAAGAGGCAACACGCCCGGGCCGTCAGCTGTCGCGATTTTTTTTTTTGTTTCCAGCACTCACCCCATCGATCGGTGCATCGCTATGCAGCTTCCCTAGGCGACCGCTAGACGTTTTCGGCATCATCTGTATGGCGTGCGCGTCGCCCGCCCTGATCGGAGGCACCCACTTCTTCCTGTTCGTGGTCGTCACCTTCTTCATCGCGACGCTGCTCTGGACGTTCGTGTACCTGCTCGGCATCCGCGAGGTCCTCAACCTGCCCATCAACTGGATACTGACGGAGTTGATCAACACGGGCATTGCCACCCTGCTCTACTTCATCGCGTTCATCGTGCAGCTGGCGTCCTGGTCGAATCTGTACGGGCATGGCCGTGGCTCCAACATTGCCGCTGGCGTGTTTGGTTTGTTCAACTTCCTGGCGTACACGGCCGGCACGTACTTCCTGTACGTGGAGCACCGATCGGCCGGCGTGTAAATGTCCCCCCCCCCCTGCACGCTCCCCTGCGGGTGGATGACACTTGCTTTTGCTGGTTAACGACTCCCGAGTTCACATCCGTCCCAGGAAAGAAGAGCCCACGGGACTACGGCACATACAGTGAGACCTACAGTCACAGGCCCGGGGACACTTGATGAATATGGCAGCAGCATCAGCAGCCAGCCAGCAAAAGCCAGCAAAACCCGAAAGCGCCCAGTTTGGG]
[+] EMBL BM580241 [GACCCACGCGTCCGCCCACGCGTCCGCGAACCGTCCGGACGTGTATGCGTGTGTGCCGACACTTTCGGGTCTGTGACAACGGTGTGTGTTGTTTCGCTAAATGTGATAAAACAAAAGCGTGCAGTATGACGTCGAGAAGCGCTCGGAATGGCCAGGGAACGGCCTGGGAGCATAGTTAGCATTAGGCCAGCATAGTTCGCCAATCAACCTTTCCGGTGTGTTGTGACCAAAAAAAAAAAAAAAAATCTCCTAAATAAGGAAGAAGAAAAGAG ]
[+] EMBL BM579147 [ CGTCCGCGAACCGTCCGGACGTGTATGCGTGTGTGCCGACACTTTCGGGTCTGTGACGACGGTGTGTGTTGTTTCGCTAAATGTGATAAAACAAAAGCGTGCAGTATGACGTCGAGAAGCGCTCGGAATGGCCAGGGAACGGCCTGGGAGCATAGTTAGCATTAGGCCAGCATAGTTCGCCAATCAACCTTTCCGGTGTGTTGTGACCAAAAAAAAAAAAAAAAATCTCCTAAATAAGGAAGAAGAAAAGAGGCAACACGCCCGGGCCGTCAGCTGTCGCGATTTTTTTTTTTGTTTCCAGCACTCACCCCATCGATCGGTGCATCGCTATGCAGCTTCCCTAGGCGACCGCTAGACGTTTTCGGCATCATCTGTATGGCGTGCGCGTCGCCCGCCCTGATCGGAGGCACCCACTTCTTCCTGTTCGTGGTCGTCACCTTCTTCATCGCGACGCTGCTCTGGACGTTCGTGTACCTGCTCGGCATCCGCGAGGTCCTCAACCTGCCCATCAACTGGATACTGACGGAGTTG ]
[+] EMBL BX623868 [ GCCCGCCCTGATCGGAGGCACCCACTTCTTCCTGTTCGTGGTCGTCACCTTCTTCATCGCGACGCTGCTCTGGACGTTCGTGTACCTGCTCGGCATCCGCGAGGTCCTCAACCTGCCCATCAACTGGATACTGACGGAGTTGATCAACACGGGCATTGCCACCCTGCTCTACTTCATCGCGTTCATCGTGCAGCTGGCGTCCTGGTCGAATCTGTACGGGCATGGCCGTGGCTCCAACATTGCCGCTGGCGTGTTTGGTTTGTTCAACTTCCTGGCGTACACGGCCGGCACGTACTTCCTGTACGTGGAGCACCGATCGGCCGGCGTGTAAATGTCCCCCCCCCCCTGCACGCTCCCCTGCGGGTGGATGACACTTGCTTTTGCTGGTTAACGACTCCCGAGTTCACATCCGTCCCAGGAAAGAAGAGCCCACGGGACTACGGCACATACAGTGAGACCTACAGTCACAGGCCCGGGGACACTTGATGAATATGGCAGCAGCATCAGCAGCCAGCCAGCAAAAGCCAGCAAAACCCGAAAGCGCCCAGTTTGGG]
consensusID : consensus_5513#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence
[CCGGAGAGAGAGAGAGAGAGAGAGAGCGGTAGATGAACAGAAGAAGCGCAAAGAAAAAAAAAACAGAAAAGTAAAACGGTTAATGTTTTAATTTCGAATAATGGTGTGTTGCTGCTGTTGTTTGCAAGTCGTGCGTGCGTGAGCAAACGGAAGCGAATGTGAGCATTTATCGGCAGTCGTACCTTTGTGTGTGAGCGAGAGAGAGAGAGCGAGAGAATAATACACTCAAATAAAAATAGTGTATGGAAACGCAGTGTACAGTGTGCCGGGCAGTGTGGTAAGTGTAGTAGGAGGGGTAAGAGACACACGAACGCTGCCTATATATATTTTTTATTCCATTCGCCGCTGCGCGCGCTCTGTCTCGCTTTATCTTTCTCTCTCTCTCTCTTTCGCTCGTTGCGTGTGCCGGGTCCGAGTACCCCGTCCACCTTATCCATTGCAATTGCTAAAGTTTATTAAACTGCGTGCGTATTGTTGTGTTTCGCTTCGCCAAGCTAAATGTGATAAAACAAAAGCGTGCAGTATGACGTCGAGAAGCGCTCGGAATGGCCAGGGGAACGGCCTGGGAGCATAGTTAGCATTAGGCCAGCATAGTTCGCCAATCAACCTTTTCGGTGT]
[+] EMBL BM631435 [CCGGAGAGAGAGAGAGAGAGAGAGAGCGGTAGATGAACAGAAGAAGCGCAAAGAAAAAAAAAACAGAAAAGTAAAACGGTTAATGTTTTAATTTCGAATAATGGTGTGTTGCTGCTGTTGTTTGCAAGTCGTGCGTGCGTGAGCAAACGGAAGCGAATGTGAGCATTTATCGGCAGTCGTACCTTTGTGTGTGAGCGAGAGAGAGAGAGCGAGAGAATAATACACTCAAATAAAAATAGTGTATGGAAACGCAGTGTACAGTGTGCCGGGCAGTGTGGTAAGTGTAGTAGGAGGGGTAAGAGACACACGAACGCTGCCTATATATATTTTTTATTCCATTCGCCGCTGCGCGCGCTCTGTCTCGCTTTATCTTTCTCTCTCTCTCTCTTTCGCTCGTTGCGTGTGCCGGGTCCGAGTACCCCGTCCACCTTATCCATTGCAATTGCTAAAGTTTATTAAACTGCGTGCGTATTGTTGTGTTTCGCTTCGCCAAGCTAAATGTGATAAAACAAAAGCGTGCAGTATGACGTCGAGAAGCGCTCGGAATGGCCAGGGGAACGGCCTGGGAGCATAGTTAGCATTAGGCCAGCATAGTTCGCCAATCAACCTTTTCGGTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5513#0 GACCCACGCGTCCGCCCACGCGTCCGCGAACCGTCCGGACGTGTATGCGTGTGTGCCGAC 60
consensus_5513#1 ------------------------------------------------------------
consensus_5513#0 ACTTTCGGGTCTGTGACAACGGTGTGTGTTGTTTCGCTAAATGTGATAAAACAAAAGCGT 120
consensus_5513#1 ---------------------------------CCGGAGAGAGAGAGAGAGAGAGAGAGC 27
** * * ** * * * ** *
consensus_5513#0 GCAGTATGACGTCGAGAAGCGCTCGGAATGGCCAGGGAACGGCCTGGGAGCATAGTTAGC 180
consensus_5513#1 GGTAGATGAACAGAAGAAGCGCAAAGAAAA---AAAAAACAGAAAAGTAAAACGGTTAAT 84
* **** ******** *** * *** * * * * ****
consensus_5513#0 ATTAGGCCAGCATAGTTCGCCAATCAACCTTTCCGGTGTGTTGTGACCAAAAAAAAAAAA 240
consensus_5513#1 GTTT--------TAATT--TCGAATAAT------GGTGTGTTGCTGCTGTTGTTTGCAAG 128
** ** ** * * ** ********* * **
consensus_5513#0 AAAAATCTCCTAAATAAGGAAGAAGAAAAGAGGCAACACGCCCGGGCCGTCAGCTGTCGC 300
consensus_5513#1 -------TCGTGCGTGCGTGAGCAAACGGAAGCGAATGTGAGCAT-TTATCGGCAGTCGT 180
** * * * ** * * ** ** * * ** ** ****
consensus_5513#0 GATTTTTTTTTTTGTTTCCAGCACTCACCCCATCGATCGGTGCATCGCTATGCAGCTTCC 360
consensus_5513#1 ACCTTTGTGTGTGAGCGAGAGAGAGAGAGCGAGAGAATAATACACTCAAATAAAAATAGT 240
*** * * * ** * * ** * ** ** * *
consensus_5513#0 CTAGGCGACCGCTAGACGTTTTCGGCATCATCTGTATGGCGTGCGCGTCGCCCGCCCTGA 420
consensus_5513#1 GTATGGAAACGCAGTGTACAGTGTGC-CGGGCAGTGTGGTAAGTGTAGTAGGAGG---GG 296
** * * *** * ** * ** *** * * * *
consensus_5513#0 TCGGAGGCACCC-ACTTCTTCCTGTTCGTGGTCGTCACCTTCTTCATCGCGACGCTGCTC 479
consensus_5513#1 TAAGAGACACACGAACGCTGCCTATATATATTTTTTATTCCATTCGCCGCTGCGC----- 351
* *** *** * * ** *** * * * * * *** *** ***
consensus_5513#0 TGGACGTTCGTGTACCTGCTCGGCATCCGCGAGGTCCTCAACCTGCCCATCAACTGGATA 539
consensus_5513#1 ---GCGCTC-TGTCTCGCTTTATCTTTCTCTCTCTCTCTCTTTCGCTCGTTGCGTG---- 403
** ** *** * * * * * * ** ** * * **
consensus_5513#0 CTGACGGAGTTGATCAACACGGGCATTGCCACCCTGCTCTACTTCATCGCGTTCATCGTG 599
consensus_5513#1 -TGCCGGGTCCGAGTACCCCGTCCAC--CTTATCCATTGCAATTGCTAAAGTTTATTAAA 460
** *** ** * * ** ** * * * * ** * *** **
consensus_5513#0 CAGCTGGCGTCCTGGTCGAATCTGTACGGGCATGGCCGTGGCTCCAACATTGCCGCTGGC 659
consensus_5513#1 CTGCGTGCGTATTGTTGTGTTTCGCTTCGCCAAGCTAAATGTGATAAAACAAAAGCGTGC 520
* ** **** ** * * * * ** * * ** * ** **
consensus_5513#0 GTGTTTGGTTTGTTCAACTTCCTGGCGTACACGGCCGGCACGTACTTCCTGTACGTGGAG 719
consensus_5513#1 A-GTATGACGTCGAGAAGCGCTCGG----AATGGCCAGGG-GAACGGCCTGGGAGCATAG 574
** ** * ** * ** * **** * * ** **** * **
consensus_5513#0 C-ACCGATCGGCCGGCGTGTAAATGTCCCCCCCCCCCTGCACGCTCCCCTGCGGGTGGAT 778
consensus_5513#1 TTAGCATTAGGCCAGCAT---AGTTCGCCAATCAACCTTTTCGGTGT------------- 618
* * * **** ** * * * ** * *** ** *
consensus_5513#0 GACACTTGCTTTTGCTGGTTAACGACTCCCGAGTTCACATCCGTCCCAGGAAAGAAGAGC 838
consensus_5513#1 ------------------------------------------------------------
consensus_5513#0 CCACGGGACTACGGCACATACAGTGAGACCTACAGTCACAGGCCCGGGGACACTTGATGA 898
consensus_5513#1 ------------------------------------------------------------
consensus_5513#0 ATATGGCAGCAGCATCAGCAGCCAGCCAGCAAAAGCCAGCAAAACCCGAAAGCGCCCAGT 958
consensus_5513#1 ------------------------------------------------------------
consensus_5513#0 TTGGG 963
consensus_5513#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||