cluster # 5519

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Anopheles gambiae
cluster # 5519 cluster # 5519 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5519#0 length = 661 sequences # 3

consensus_5519#1 length = 549 sequences # 1

consensusID : consensus_5519#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 661
fasta sequence

                              [CCGCTGGTGTCCGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCTGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACT-GGGTGTTTGGTGGCATCTACA-CCCTGTTCGACGTGACCTGCCGGCCCGCCATCATCCGCCGGTACAAGATGCAGCCGGGCACGAACGAGCCGGTCGATCGGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCTGCTGAACCAGACGGTCGTCGGCGTGCCGATGGCGTACTGCATGTACAGGGCGATGCGGTTC]

[+] EMBL BM589002             [CCGCTGGTGTCTGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCTGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACTGGGGTGTTTGGTGGCATCTACACCCCTGTTCGACGTGACCTGCCGGCCCG                                                                                                                                                  ]
[+] EMBL BM605673             [          CCGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACT GGGTGTTTGGTGGCATCTACA CCCTGTTCGACGTGACCTGCCGGCCCGCCATCATCCGCCGGTACAAGATGCAGCCGGGCACGAACGAGCCGGTCGATCGGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCTGCTGA                                                        ]
[+] EMBL BM595141             [           ccGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCTGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACT GGGTGTTTGGTGGCATCTACA CCCTGTTCGACGTGACCTGCCGGCCCGCCATCATCCGCCGGTACAAGATGCAGCCGGGCACGAACGAGCCGGTCGATCGGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCTGCTGAACCAGACGGTCGTCGGCGTGCCGATGGCGTACTGCATGTACAGGGCGATGCGGTTC]




>consensus_5519#0
CCGCTGGTGTCCGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTG
AAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCTGACGACTGTGGTTCGTCGCCTGC
TGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCA
AGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCA
AAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGT
CGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATC
CGGTGACTTCTGGCAGTCGCAGTGGGACCGATTCATCGACTTCACCGGCGAAGATCCGGC
CCACCTCTGGGTGGCCAGTACGACCATCTTCACGATGGCGGTATACTGGGTGTTTGGTGG
CATCTACACCCTGTTCGACGTGACCTGCCGGCCCGCCATCATCCGCCGGTACAAGATGCA
GCCGGGCACGAACGAGCCGGTCGATCGGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCT
GCTGAACCAGACGGTCGTCGGCGTGCCGATGGCGTACTGCATGTACAGGGCGATGCGGTT
C

consensusID : consensus_5519#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [CCGCGGACGCGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTCTCTCGCTCTTTCTCGCTGTCGGGTGCGATGTGCTACGGGCAAATTGCGTCGAATATCCTTACAGCCCGTCACAGCTAGCGCGACATTAGTTCGCATCTGGTGTCTGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCGGTCGCCTGGCTGTGGTTTAC]

[+] EMBL BM579527             [CCGCGGACGCGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTCTCTCGCTCTTTCTCGCTGTCGGGTGCGATGTGCTACGGGCAAATTGCGTCGAATATCCTTACAGCCCGTCACAGCTAGCGCGACATTAGTTCGCATCTGGTGTCTGGTGTACTCACACATCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCCCATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCCCACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGGACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGTACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTCTGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCGGTCGCCTGGCTGTGGTTTAC]




>consensus_5519#1
CCGCGGACGCGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGT
CTCTCGCTCTTTCTCGCTGTCGGGTGCGATGTGCTACGGGCAAATTGCGTCGAATATCCT
TACAGCCCGTCACAGCTAGCGCGACATTAGTTCGCATCTGGTGTCTGGTGTACTCACACA
TCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCC
CATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCC
CACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGG
ACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGT
ACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTC
TGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCGGTCGCCTGGCT
GTGGTTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5519#0      ------------------------------------------------------------
consensus_5519#1      CCGCGGACGCGTGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGT 60
                                                                                  

consensus_5519#0      ------------------------------------------------------------
consensus_5519#1      CTCTCGCTCTTTCTCGCTGTCGGGTGCGATGTGCTACGGGCAAATTGCGTCGAATATCCT 120
                                                                                  

consensus_5519#0      ----------------------------------CCGCTGGTGTCCGGTGTACTCACACA 26
consensus_5519#1      TACAGCCCGTCACAGCTAGCGCGACATTAGTTCGCATCTGGTGTCTGGTGTACTCACACA 180
                                                        *  ******** **************

consensus_5519#0      TCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCC 86
consensus_5519#1      TCAGCTGTGCAGCAACATTGGCAACATTGTACTGAAAGATGGAGAGCAGTTCCAGTAGCC 240
                      ************************************************************

consensus_5519#0      CATTGCCGGCTGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCC 146
consensus_5519#1      CATTGCCGGCCGACGACTGTGGTTCGTCGCCTGCTGACGCACTGCAACCTCATGTCGCCC 300
                      ********** *************************************************

consensus_5519#0      CACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGG 206
consensus_5519#1      CACCGGACGGTGCCGAGAGCGCGCCGAGCGTGCAAGAGGGAAGGAGCACACCCGGCCAGG 360
                      ************************************************************

consensus_5519#0      ACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGT 266
consensus_5519#1      ACCCGGCCGGTCCGGCGACCACGCTTGAGCCGCAAAACCCGCGCCTCCTCTCCTCCCTGT 420
                      ************************************************************

consensus_5519#0      ACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTC 326
consensus_5519#1      ACAGCTTTCTCGTGATCGTGAGCTTTTTTCTCGTCGGGTTCGCCGCTTTCCGCAACACTC 480
                      ************************************************************

consensus_5519#0      TGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCAGTCGCAGTGGG 386
consensus_5519#1      TGACCTGGCATCTGCAGCGGTTCTGGGGCGCATCCGGTGACTTCTGGCGGTCGCC-TGGC 539
                      ************************************************ *****  *** 

consensus_5519#0      ACCGATTCATCGACTTCACCGGCGAAGATCCGGCCCACCTCTGGGTGGCCAGTACGACCA 446
consensus_5519#1      TGTGGTTTAC-------------------------------------------------- 549
                         * ** *                                                   

consensus_5519#0      TCTTCACGATGGCGGTATACTGGGTGTTTGGTGGCATCTACACCCTGTTCGACGTGACCT 506
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      GCCGGCCCGCCATCATCCGCCGGTACAAGATGCAGCCGGGCACGAACGAGCCGGTCGATC 566
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      GGCGCCGGCTCGCGAAGGTGATCGCGACGGTGCTGCTGAACCAGACGGTCGTCGGCGTGC 626
consensus_5519#1      ------------------------------------------------------------
                                                                                  

consensus_5519#0      CGATGGCGTACTGCATGTACAGGGCGATGCGGTTC 661
consensus_5519#1      -----------------------------------