These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 655 fasta sequence [CCGCGGACGCGTGGGGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGCTCGGTTCGAGGATTCGATTTAAGGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTGCGCCAGCAGGTCCCTTGCGTACGGTGGAAGGAGGGGCCGCGTGTGCGTA] [+] EMBL BM579778 [CCGCGGACGCGTGGGGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGCTCGGTTCGAGGATTCGATTTAAGGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTGCGCCAGCAGGTCCCTTGCGTACGGTGGAAGGAGGGGCCGCGTGTGCGTA] consensusID : consensus_5525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 624 fasta sequence [CCGCGCCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCA--ACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCG-TCGC--CCTCGAGTTCGAGTTCGGTTCGAGGATTCGATTTAA-GGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTGCGCCAG] [+] EMBL BM644983 [CCGCGCCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCA ACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCG TCGC CCTCGAGTTCGAGCTCGGTTCGAGGATTCGATTTAA GGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTG ] [+] EMBL BM614589 [ ccgCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCCAAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTACCATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCA ACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAACCGCACCACCCAGAGCGCGCG TCGC CCTCGAGTTCGAGTTCGGTTGGAGGATTCGATTTAA GGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTGCGCCAG] [+] EMBL CNS08RAB [ TCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCACACGCCCCAACACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTTGTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGCTCGCCACCTCGAGTTCGAGTTCGGTTCGAGGATTCGATTTAAGGGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGTATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGATCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAAGCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAATGTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTGTCTAGAAACGGCCAACTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5525#0 ------------CCGCGGACGCGTGGGGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCC 48 consensus_5525#1 CCGCGCCATTTTGTGTTTCAGGGCGATGTGAATTCGGACGAGCGGAGAAAAGGTTCGGCC 60 * * * * ********************************* consensus_5525#0 AAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTAC 108 consensus_5525#1 AAGCTAGAGCATACCCTTAAATCCGCCCTACCCGACCGGAAGTGACAGGCGTGCGCGTAC 120 ************************************************************ consensus_5525#0 CATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCA 168 consensus_5525#1 CATCTCGTGATCATCATCATCATCATCACCCTCAGCTTCGTCAGCATCGACATCACTCCA 180 ************************************************************ consensus_5525#0 CACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTT 228 consensus_5525#1 CACGCCCCAACACACACACTCGGTGCTGAGGGGGTTTGCTTTTTGCGGAGTAGTTGTGTT 240 ************************************************************ consensus_5525#0 GTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGCTCGG 288 consensus_5525#1 GTGTTCGACAATAATAGCCGCACCACCCAGAGCGCGCGTCGCCCTCGAGTTCGAGTTCGG 300 ******************************************************* **** consensus_5525#0 TTCGAGGATTCGATTTAAGGGAAGCGAGCATCCTGCGAAAGGATATGTGTGCGCTCCAGT 348 consensus_5525#1 TTCGAGGATTCGATTTAAGGGAAGCGAGCATCCAGCGAAAGGATATGTGTGCGCTCCAGT 360 ********************************* ************************** consensus_5525#0 ATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGA 408 consensus_5525#1 ATCAATCGTAGATGATGATCGCATCCGTCTGGTGTGCGCTGATGATGCGTCAAGCGACGA 420 ************************************************************ consensus_5525#0 TCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAA 468 consensus_5525#1 TCGGCTGTGTGTAATGTCGTGAACAAGGAGAAGAGGGACGACGAGTGGCGCACAAAAAAA 480 ************************************************************ consensus_5525#0 GCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAAT 528 consensus_5525#1 GCAATAGGAAAGGTGGTGCTAGCTGTGTCACTCCGTGCGCGTGCGGTGCGTGTTTTTAAT 540 ************************************************************ consensus_5525#0 GTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTG 588 consensus_5525#1 GTGTTTAATGTGTCAAGAAAAACGGTTGCTACGGGAGTGGGCATTGTGTGTGAAAGTGTG 600 ************************************************************ consensus_5525#0 TCTAGAAACGGCCAACTGCGCCAGCAGGTCCCTTGCGTACGGTGGAAGGAGGGGCCGCGT 648 consensus_5525#1 TCTAGAAACGGCCAACTGCGCCAG------------------------------------ 624 ************************ consensus_5525#0 GTGCGTA 655 consensus_5525#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||