These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1500 fasta sequence [CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAG-AT-GGCGAAGAGCATACCGATCACGACGACGACTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTCTTCATGATCTACCTCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCGCACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCGCATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCGTCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGCCAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTCACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTTGCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGGTTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCGGCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGANTTCGAACGAACCAANAACC] [+] EMBL BM587146 [CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGC ] [+] EMBL BM587705 [ cCGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAG AT GGCGAAGAGCATACCGATCACGACGACGACTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTC ] [+] EMBL BX467402 [ CAAGAATCGGC ACGAG GGCCGATCACGACGACGACTCACCAACGATCGCCAAAGTCACCTCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGCTGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGATCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACCACCTTCCTGCATCTGCTGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGGACGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGCTTCTTCATGATCTACCTCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCGCACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCGCATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCGTCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGCCAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTCACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTTGCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGGTTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCGGCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGANTTCGAACGAACCAANAACC] consensusID : consensus_5526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG] [+] EMBL BM579807 [CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAATCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGACGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAAAAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGTGTGTTTGTAGCGCACGCGTAACTTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGGAAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGAGTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCCAGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCCAGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGTTGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCCCCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAGTCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5526#0 ------------------CCGCGGACGCGTGGGGGGTTTTTCCCGCTAGGTAGTAGAGAA 42 consensus_5526#1 CCGCCCACGCGTCCGCCAGGTTGCAGGTTTGAAGGGTTTTTCCCGCTAGGTAGTAGAGAA 60 * * * ** *************************** consensus_5526#0 TCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGA 102 consensus_5526#1 TCCGGAGTCCGATGCGACCATATCAGAGTGCACTAGTGACGACGACGACGACGACGACGA 120 ************************************************************ consensus_5526#0 CGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAA 162 consensus_5526#1 CGGGACGGCAGGTGCGTGTGGTGGCCCGCGGGTGATAAGGGCAAGGTGAGAGACATTAAA 180 ************************************************************ consensus_5526#0 AAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGT 222 consensus_5526#1 AAGGTGTTAACGGTCGCGGTCGCTCTAAAGTGTACAGGCTGTGTGTGTGTTTGTGTATGT 240 ************************************************************ consensus_5526#0 GTGTTTGTAGCGCACGCGTAACTAGTGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGG 282 consensus_5526#1 GTGTTTGTAGCGCACGCGTAACT--TGAGAGTGATCGGTCCGAGAGTGGGGAGGAGAAGG 298 *********************** *********************************** consensus_5526#0 AAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGA 342 consensus_5526#1 AAAAAGCAGGAAGAAGAGGGGGAATACGTCCCGAAACCAGACCGGAAAGGAAGAGAAAGA 358 ************************************************************ consensus_5526#0 GTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCC 402 consensus_5526#1 GTGCCACCATCACAGGTGTTAATACAAAGCGTCAACAAAACAGTTTGCTACGCAGCAGCC 418 ************************************************************ consensus_5526#0 AGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCC 462 consensus_5526#1 AGAACGTAGACCACGAGACAACGGCACAACGCAAGGCCGCACAGCATCTGCACAGGAGCC 478 ************************************************************ consensus_5526#0 AGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGT 522 consensus_5526#1 AGACAGCGCGTACAGTACCAACCCGAAAACAACCACCACCATCATCATCATGGACATTGT 538 ************************************************************ consensus_5526#0 TGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCC 582 consensus_5526#1 TGCAGCAACAACCGAGCGGCTGGTCGATACGCTTGCGAACGGGACACTCTCGCTAACCCC 598 ************************************************************ consensus_5526#0 CCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACT-CGCCAACGATCGCCAAAG 641 consensus_5526#1 CCGGCAAGATGGCGAAGAGCATACCGATCACGACGACGACTTCGCCAACGATCGCCAAAG 658 ***************************************** ****************** consensus_5526#0 TCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCGGACTCGTACCCTTCAAGC 701 consensus_5526#1 TCACATCCATGGTGGTGCTGTTCAGCGTCAGCATGGTGTGCG------------------ 700 ****************************************** consensus_5526#0 TGGTGCGCTGGTTTAACCTCAACCCGGCCACCCCGTCCGGAGGCACACACCTCTTCCTGA 761 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 TCCGGCTACTGCTCTCCTTCGGCGGTGGTGCCCTCCTAAGCACTACCTTCCTGCATCTGC 821 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 TGCCCGAGATCAATCACTCGATCGAAGCGCTCGTTGAGACGGGCGCCCTGCCCGCCCCGG 881 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 ATGAACTGCCCTTCCCGCTGGGTGAGTTTCTCCTTACGAGCGGGTTCTTCATGATCTACC 941 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 TCACGGAGGAGCTGGTCCACTGGTGGATGCATCGCCGCTCGGCCAATGCACGGCGGATCG 1001 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 CACGGTCCGAAAAGACAGCGCCCGGTGGCAGCAGTACGATGGTACCGATCGATGGTGGCG 1061 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 CATCGAAGCACGACCACGCGCACGGACATTCGCATCTCCCGATCGGGAACGTAACCGCCG 1121 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 TCTACCCCGTGACGGATGTGGATGGGACGCAGGTCGTACCGAGTGTGGTTCCGGTGCCGC 1181 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 CAGCGCCAAGCGCTAACGGTCCCCTGCGCGGCCTGCTGATCGTACTCGCCCTCTCCATTC 1241 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 ACGAGCTGTTCGAAGGGCTCGCGGTAGGTCTGGAACGGTCACCATCCCGGCCGTATGGTT 1301 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 GCTGTACCGGGTGCAGTCGGCCTCGGCCACAAGTTTGTGATTGCGTTCTGCGTTCCGCGG 1361 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 TTTGAGCTGNTAGGTAGCNCGGCGGTNCAGTTCCGCGATTGCCGNAACTGGTACATNTCG 1421 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 GCTACNTCGGGNGGNTNAACCCCGGCGGGANNAGGCTTGGTTTTGGCTCANAGTCGGGAN 1481 consensus_5526#1 ------------------------------------------------------------ consensus_5526#0 TTCGAACGAACCAANAACC 1500 consensus_5526#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||