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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1092 fasta sequence
[TCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGGATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTCGCCCCGCTTCCTCTACATGTGGCCGAACAGTCGCATCTCGGTGATGGGCGGCTCGCAGGCGGCCGGTGTGCTGGNCCAAATCACCGAGGAGCAGTACCGCCGGACCGGGCGCGAATGGACNGANGAGATTGGCAATCGCATCAAGGCGCCGATCGTGCAGCAGTTCGAGGCGGANGGATCACCGTACTACAGTACCGCCCGGCTGTGGGACGATGGCATCATCGATCCGGTCGATACGCGCCGCGTGCTGGGGCTTAGCTTGCAGGCGGCCCTGAACCACCCGGTCGGCGAGACTCGCTTCGGTGTGTTCCGCATGTAGAGGAAGCAAAGAGATAGGCAGTGATCCACACAGCGAAAGCTTCAAATATTGGACGCGAAAACCAGGTGTTGCATTTATCTAGCTCGTAAGCGTGAGTAACAGTAACAGACTTGGCCAGCGATTGGCTACGAATAACGTACGAAATTTGTACCGACACACAGAAACGATACATTGCATCTAATGCATTCCATGCGTCTTCCAGTAGCGCAACAACAGAGTAGCACCAAGTGCGGGAAATGGTTTGATAAGAATATTATTTTGAAAAAATGTGCCTTTATCTGCCATA]
[+] EMBL BX626351 [TCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGGATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTCGCCCCGCTTCCTCTACATGTGGCCGAACAGTCGCATCTCGGTGATGGGCGGCTCGCAGGCGGCCGGTGTGCTGGNCCAAATCACCGAGGAGCAGTACCGCCGGACCGGGCGCGAATGGACNGANGAGATTGGCAATCGCATCAAGGCGCCGATCGTGCAGCAGTTCGAGGCGGANGGATCACCGTACTACAGTACCGCCCGGCTGTGGGACGATGGCATCATCGAT ]
[+] EMBL BM580219 [ ccgCACCGTACTACAGTACCGCCCGGCTGTGGGACGATGGCATCATCGATCCGGTCGATACGCGCCGCGTGCTGGGGCTTAGCTTGCAGGCGGCCCTGAACCACCCGGTCGGCGAGACTCGCTTCGGTGTGTTCCGCATGTAGAGGAAGCAAAGAGATAGGCAGTGATCCACACAGCGAAAGCTTCAAATATTGGACGCGAAAACCAGGTGTTGCATTTATCTAGCTCGTAAGCGTGAGTAACAGTAACAGACTTGGCCAGCGATTGGCTACGAATAACGTACGAAATTTGTACCGACACACAGAAACGATACATTGCATCTAATGCATTCCATGCGTCTTCCAGTAGCGCAACAACAGAGTAGCACCAAGTGCGGGAAATGGTTTGATAAGAATATTATTTTGAAAAAATGTGCCTTTATCTGCCATA]
consensusID : consensus_5531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence
[CCGCCCACGCGTCCGCACGTTTTTTGGCCAAACTCCATTGCCGTACAGACTCGCCTGTTCGCTGTTTCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGCATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTACCCGATCACGGTGAAGAAGCATCTGCGTGCGCAGGAGATCGCGCAGGAGAACAATCTGCCGTGCATCTATCTGGTC--GATTCCGGCGGTGCCAACTTGCCCCGCC--AGGCCGACGTGTTCCCGGACAAGATGCACTTTTTTGG]
[+] EMBL BM587594 [CCGCCCACGCGTCCGCACGTTTTTTGGCCAAACTCCATTGCCGTACAGACTCGCCTGTTCGCTGTTTCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGCATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTACCCGATCACGGTGAAGAAGCATCTGCGTGCGCAGGAGATCGCGCAGGAGAACAATCTGCCGTGCATCTATCTGGTC GATTCCGGCGGTGCCAACTTGCCCCGCC AGGC ]
[+] EMBL BM589059 [ ccgCGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGAGCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGTCGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAATTTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGGAGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGTTGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGACGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCGGCATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGGGCGGTACGTACTACCCGATCACGGTGAAGAAGCATCTGCGTGCGCAGGAGATCGCGCAGGAGAACAATCTGCCGTGCATCTATCTGGCCCAAATTCCGGCGGTGCCAACTTGCCCCGCCCAAGGCCGACGTGTTCCCGGACAAGATGCACTTTTTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5531#0 ------------------------------------------------------------
consensus_5531#1 CCGCCCACGCGTCCGCACGTTTTTTGGCCAAACTCCATTGCCGTACAGACTCGCCTGTTC 60
consensus_5531#0 ------TCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGA 54
consensus_5531#1 GCTGTTTCCCCCGGCGCAGACGCACCAAGAAAGCCAGCAGCATGCTGTCCAAAGCGCGGA 120
******************************************************
consensus_5531#0 GCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGT 114
consensus_5531#1 GCCTTCTCTCCCTCACACGTGTCCACCATGGATCGGTGGCGAACGTTCTCGGGGTTCGGT 180
************************************************************
consensus_5531#0 CGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAAT 174
consensus_5531#1 CGGTGCACATTTCCGAAGCCAATGTACTGCCGACGGAGGTGAATCGCCAGTCAGCAGAAT 240
************************************************************
consensus_5531#0 TTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGG 234
consensus_5531#1 TTAAGGAAAACTATGGGCAAATGAACGAGCTGGTCGTTAACCTGAAGCGTGTCACGCAGG 300
************************************************************
consensus_5531#0 AGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGT 294
consensus_5531#1 AGGTGCTTGCCGGCGGTGGACCGGAAGCGATCAAGCGGCACACGTCCAAAGGGAAGCTGT 360
************************************************************
consensus_5531#0 TGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGA 354
consensus_5531#1 TGGCGCGCGATCGCATCAACCGACTGGTCGATCCGGGCTCGCCGTTCCTCGAGCTGTCGA 420
************************************************************
consensus_5531#0 CGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCG 414
consensus_5531#1 CGCTGGCCGCCCACGACATGTACGGCAAGGATGTGGTCAACTCGGCCGGCATCGTAACCG 480
************************************************************
consensus_5531#0 GGATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGG 474
consensus_5531#1 GCATCGGCCGGGTGCAGGGCGTGGAGTGTGTGATCGTCGCCAACGATGCGACCGTCAAGG 540
* **********************************************************
consensus_5531#0 GCGGTACGTACTCGCCCCGCTTCCTCTA----CATGTGGCCGAACAGTCGCATCTCGGTG 530
consensus_5531#1 GCGGTACGTACTACCCGATCACGGTGAAGAAGCATCTGCGTGCGCAGGAG-ATCGCGCAG 599
************ ** * * * *** ** * *** * *** ** *
consensus_5531#0 ATGGGCGGCTCGCAGGCGGCCGGTGTGCTGGNCCAAATCACCGAGGAGCAGTACCGCCGG 590
consensus_5531#1 GAGAACAATCTGCCGTGCATCTATCTGGTCGATTCCGGCGGTGCCAACTTGCCCCGCCAG 659
* * ** * * * ** * * * * * * ***** *
consensus_5531#0 ACCGGGCGCGAATGGACNGANGAGATTGGCAATCGCATCAAGGCGCCGATCGTGCAGCAG 650
consensus_5531#1 GCCG---ACGTGTTCCCGGACAAGAT--GCACTTTTTTGG-------------------- 694
*** ** * * ** **** *** * *
consensus_5531#0 TTCGAGGCGGANGGATCACCGTACTACAGTACCGCCCGGCTGTGGGACGATGGCATCATC 710
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 GATCCGGTCGATACGCGCCGCGTGCTGGGGCTTAGCTTGCAGGCGGCCCTGAACCACCCG 770
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 GTCGGCGAGACTCGCTTCGGTGTGTTCCGCATGTAGAGGAAGCAAAGAGATAGGCAGTGA 830
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TCCACACAGCGAAAGCTTCAAATATTGGACGCGAAAACCAGGTGTTGCATTTATCTAGCT 890
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 CGTAAGCGTGAGTAACAGTAACAGACTTGGCCAGCGATTGGCTACGAATAACGTACGAAA 950
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 TTTGTACCGACACACAGAAACGATACATTGCATCTAATGCATTCCATGCGTCTTCCAGTA 1010
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 GCGCAACAACAGAGTAGCACCAAGTGCGGGAAATGGTTTGATAAGAATATTATTTTGAAA 1070
consensus_5531#1 ------------------------------------------------------------
consensus_5531#0 AAATGTGCCTTTATCTGCCATA 1092
consensus_5531#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||