These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5532#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 791 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGATGCGCTAGAACGCGCCCTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAGGTTAATCGTATAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACGTATCTGGAGCGGTGGAGGCCGACGTGTACCCATCGAAAGGAGAAAGTCCAAAAAGGATGTTGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAAGTCAG----CTCTCTCTTTCCCTTTATTTCATTCTCCCAGTGGAACCTCCTTATCAATTGTCATATGTATCGTTACGATGTAAAGTGGATT-GACTGTAAGGAAACAAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAGAGCAATATTTTCATCCCGAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTGAGAGCAGGTATAAAATGAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGATCCGGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATAAAATGC-GGGCGTGTGAACTGAAGCCAGCAAAGAGCAATGAGATATTTATTGAAGTGAAATTTGCAATAAAATCATTGTAAACAAATTCAAAACCAAAAAAAAAAAAAAAAAGGCCACATGTTCCCGAGCGGGGGG] [+] EMBL BM580273 [CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGATGCGCTAGAACGCGCCCTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAGGTTAATCGTATAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACGTATCTGGAGCGGTGGAGGCCGACGTGTACCCATCGAAAGGAGAAAGTCCAAAAAGGATGTTGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAAGTCAG CTCTCTCTTTCCCTTTATTTCATTCTCCCAGTGGAACCTCCTTATCAATTGTCATATGTATCGTTACGATGTAAAGTGGATT GACTGTAAGGAAACAAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAGAGCAATATTTTCATCCCGAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTGAGAGCAGGTATAAAATGAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGAGCCAGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATATAATGCGGGGCGCGTGAACTGAAGCCAGCg ] [-] EMBL CNS08I1N [ TATGATATTTTTGCAAGTCAGGTTTTTCTGTGTTTGGCTTTATTTGATTGTGGGAGTGGAACCTCCTTATCAATTGTTATATGTATCGTTACGATGTAAAGTGGATTAGATTGTAAGGAAACAAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAGAGCAATATTTTCATCCCAAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTGAGAGCAGGTATAAAATGAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGATCCGGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATAAAATGC GGGCGTGTGAACTGAAGCCAGCAAAGAGCAATGAGATATTTATTGAAG ] [+] EMBL CNS08ZE7 [ GAGACTAAGCTTAGCTAGAGATAGCGGACCCTTGACTAGACTTGATCCGGA GGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCATAAAATGC GGGCGTGTTAACTGAAGCCAGCAAAGAGCAATGAGATATTTATTGAAGTGAAATTTGCAATAAAATCATTGTAAACAAATTCAAAACCAAAAAAAAAAAAAAAAAGGCCACATGTTCCCGAGCGGGGGG] consensusID : consensus_5532#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [AGCGCTCAAGCGCGATCTGCACCTGGCCGCCCGGTTCACGCTGTACGAGCAGCAGCTGACGGAGAACAATGCCATCGTCGCCAACCTGGACACGCACGAGGTACGGTTGCTTTCGTCGCAGTCGCTCGTGGACGGCGACATCGTCGGCATGTCGCAGCTGGTATCGTCCATGCTGGAGGCTGTCAGTGCGATGTGGTCCGCTGGAATCTCCGCTTATCAGTGCATGGCGTTTATTGAATCGAAACTGCGCGAGCTCTACCTGCAGTCGTAAACGATCGCGAGCGTCATGCTCGCGACAGACTTCTGCACGCTGAGCTCGATCACCACCGCCATGGACATCACTGCCAACGATATGGAGCTGCTGCTGTCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGATGCGCTAGAACGTGCCTTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAGGTTAATCATTTAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACGTATCTGGAGAGGTGGGTGCCAACGTGTACCCAGCGAAAGGAGAAAGTCGAAAAAGGATGTAGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAAGTCAGCTCTCTCTTT] [+] EMBL BX609079 [AGCGCTCAAGCGCGATCTGCACCTGGCCGCCCGGTTCACGCTGTACGAGCAGCAGCTGACGGAGAACAATGCCATCGTCGCCAACCTGGACACGCACGAGGTACGGTTGCTTTCGTCGCAGTCGCTCGTGGACGGCGACATCGTCGGCATGTCGCAGCTGGTATCGTCCATGCTGGAGGCTGTCAGTGCGATGTGGTCCGCTGGAATCTCCGCTTATCAGTGCATGGCGTTTATTGAATCGAAACTGCGCGAGCTCTACCTGCAGTCGTAAACGATCGCGAGCGTCATGCTCGCGACAGACTTCTGCACGCTGAGCTCGATCACCACCGCCATGGACATCACTGCCAACGATATGGAGCTGCTGCTGTCCGTTGCGTCGGTGCACACGCCCGAAGCCACCAAGCGGTACCGCGTGCTGATGCGCTAGAACGTGCCTTAGAAAGGAGCTTACAATTTTGCAGAATGCAAATGTGATATTAGGTTAATCATTTAGGGTAGAGTAGGTACGCAACCAGGTACGTCATTCAAAGAGAGCGGACGTATCTGGAGAGGTGGGTGCCAACGTGTACCCAGCGAAAGGAGAAAGTCGAAAAAGGATGTAGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAGATGCTATGATATTTTTGCAAGTCAGCTCTCTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5532#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCGTTGCGTCGGTGCACACGCCCGAAGCCACCA 60 consensus_5532#1 ----------------------------------------------------AGCGCTCA 8 *** ** consensus_5532#0 AGCGGTACCGCGTGCTGATGCGCTAGAACGCGCCCTAGAAAGGAGCTTACAATTTTGCAG 120 consensus_5532#1 AGCGCGATCTGCACCTGGCCGCCCGGTTCACGCTGTACGA-GCAGCAGCTGACGGAGAAC 67 **** * * *** * * * *** ** * * *** * * * consensus_5532#0 AATGCAAATGTGATATTAGGTTAATCGTATAGGGTAGAGTAGGTACGCAACCAGGTACGT 180 consensus_5532#1 AATGCCATCGT--CGCCAACCTGGACACGCACG---AGGTACGGTTGCTTTCGTCGCAGT 122 ***** * ** * * * * * *** * ** * ** consensus_5532#0 CATTCAAAGAGAGCGGACGTATCTGGAGCGGTGGAGGCCGACGTGTACCCATCGAAAGGA 240 consensus_5532#1 CGCTCGTGGACGGCG-ACATCGTCGGCATGTCGCAGCTGGTATCGTCCATGCTGGAGGCT 181 * ** ** *** ** * ** * * ** * ** * * * * consensus_5532#0 GAAAGTCCAAAAAGGAT-GTTGATGAATGAACAGATCCCCTTGGGGATTATTTCGAGCAG 299 consensus_5532#1 GTCAGTGCGATGTGGTCCGCTGGAATCTCCGCTTATCAGTGCATGGCGTTTATTGAATCG 241 * *** * * ** * ** * * *** ** * * * ** * consensus_5532#0 ATGCTATGATATTTTTGCAAGTCAGCTCTCTCTTTCCCTTTATTTCATTCTCCCAGTGGA 359 consensus_5532#1 AAACTGCGCGAGCTCTACCTG-CAGTCGTAAACGATCGCGAGCGTCATGCTCGCGACAGA 300 * ** * * * * * * *** * * **** *** * ** consensus_5532#0 ACCTCCTTATCAATTGTCATATGTATCGTTACGATGTAAAGTGGATTGACTGTAAGGAAA 419 consensus_5532#1 --CTTCTGCACGCTGAGCTCGATCACCACCGCCATGGACA------TCACTGCCAACGAT 352 ** ** * * * * * * *** * * * **** * * consensus_5532#0 CAAGAAAGGTGTAATTTCTGACCAAAAGTTGTGATTAGAGCGTGTAAAAGTGTATTGCAG 479 consensus_5532#1 -----ATGGAGCTGCTGCTGTCCGTT-GCGTCGGTGCACACGCCCGAAGCCACCAAGCGG 406 * ** * * *** ** * * * ** ** ** * consensus_5532#0 AGCAATATTTTCATCCCGAACGGGGATGTGCCTTGGAGCGGCAGGTAAGCCGAGGTTGTG 539 consensus_5532#1 TACCGCGTGCTGATGC---GCTAGAACGTGCCTTAGAAAGGAGCTTA---CAATTTTGCA 460 * * * ** * * * * ******* ** ** ** * * *** consensus_5532#0 AGA-GCAGGTATAAAATGAGACTAAGCTTAGCTAGAG-ATAGCGGACCCTTGACTAG--A 595 consensus_5532#1 GAATGCAAATGTGATATTAGGTTAA--TCATTTAGGGTAGAGTAGGTACGCAACCAGGTA 518 * *** * * * ** ** *** * * *** * * ** * * ** ** * consensus_5532#0 CTTGATCCGGAGGGTTTAAAAGACCCAGCCGACATTTGTCGTTAGCAAACGTTTAGCCAT 655 consensus_5532#1 CGTCATTCAAAGAGAGCGGACGTATCTGGAGAGGTGGGT-GCCAACGTGTACCCAGCGAA 577 * * ** * ** * * * * * ** * ** * * * *** * consensus_5532#0 AAAATGCGGGCGTGTGA--ACTGAAGCCAGCAAAGAG---CAATGAGATATTTATTGAAG 710 consensus_5532#1 AGGAGAAAGTCGAAAAAGGATGTAGATGAATGAACAGATCCCCTTGGGGATTATTTCGAG 637 * * * ** * * * * ** ** * * * *** ** ** consensus_5532#0 TGAAATTTGCAATAAAATCATTGTAAACAAATTCAAAACCAAAAAAAAAAAAAAAAAGGC 770 consensus_5532#1 CAGA---TGCTATGATATTTTTGCAAGTCAGCTCTCTCTTT------------------- 675 * *** ** * ** *** ** * ** consensus_5532#0 CACATGTTCCCGAGCGGGGGG 791 consensus_5532#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||