These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 881 fasta sequence [CCGGCGATAGCGTGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAACCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTAGGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCGTTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCATCGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAGCGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAAAGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATACATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATTTTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGAAGCATCATTAGCAGGCCTCGGAAAAGTTCNCTTTGTCGTACAAACGCGCGCGGNGCTGTGGATGTACNTCAATAGTGNGAGCGAGTGTGTGCATCGTTNCTTAGCANGCGCGGAAGGAAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACAT] [+] EMBL BM617709 [CCGGCGATAGCGTGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAACCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTAGGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCGTTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCATCGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAGCGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAAAGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATACATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATTTTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAG AAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGA ] [+] EMBL BM580452 [ ccGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAACCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTAGGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCGTTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCATCGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAGCGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAAAGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATACATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATTTTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAG ] [+] EMBL BX623497 [ CATTGCTGCTCTGCATCGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAGCGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAAAGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCANGAGGGGGAATACATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATTTTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCANAAGCATCATTAGCAGGCCTCGGAAAAGTTCNCTTTGTCGTACAAACGCGCGCGGNGCTGTGGATGTACNTCAATAGTGNGAGCGAGTGTGTGCATCGTTNCTTAGCANGCGCGGAAGGAAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACAT] consensusID : consensus_5533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GAATCCGCACGATNGNTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGAAGCATCATTAGCAGGCCTCGGAAAAGTTCGCTTTGTCGTACAAACGCGCGCGGTGCTGTGGATGTACGTCAATAGTGTGAGCGAGTGTGTGCATCGTTCCTTAGCAGGCGCGGAAGGAAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACATCAACGTAGGCAGGCCGTGGTGTAAAAGCAGGCAAAGAAAGCTCTGCTCAAACGTCGACGATTAGTGCACATAGGCATAGAGTGTGTGGAAAGAACGTGAAGAAGCATCTTCTCGTACCGCGAT] [+] EMBL BX466462 [GAATCCGCACGATNGNTCTTGGGCACTTGCTTGCTGTCCTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTCATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCGAAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGCAGAAGCATCATTAGCAGGCCTCGGAAAAGTTCGCTTTGTCGTACAAACGCGCGCGGTGCTGTGGATGTACGTCAATAGTGTGAGCGAGTGTGTGCATCGTTCCTTAGCAGGCGCGGAAGGAAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACATCAACGTAGGCAGGCCGTGGTGTAAAAGCAGGCAAAGAAAGCTCTGCTCAAACGTCGACGATTAGTGCACATAGGCATAGAGTGTGTGGAAAGAACGTGAAGAAGCATCTTCTCGTACCGCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5533#0 CCGGCGATAGCGTGCACGTTTGCAGTAGCCTCATCTGGTGGGATTGATTTGTGGTGCGAA 60 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 CCGTGTGGACGGCAGCGAAAATTGGAGTGTGTTTGTGCAGCGTGTTACGAACACAATTTA 120 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 GGAGAAGAAAAAAAAAGGTGGATTTGTGTGTTCGGTGGTGGAAGAAGGCAGGAAGAAGCG 180 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 TTCTGGATGCCACAATGAGGTTAATTTGTGCAAAAGTATTGTAACATTGCTGCTCTGCAT 240 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 CGCGGACAAGGAAGAACCAACTGGAAAGCCTGCCAAACGTAAAACTCGCATTCAGTGAAG 300 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 CGTAAGCTCTACTCCCTACTGTGAAATCACCCTCCGGATCGTTTTACGGGAGAATAGCAA 360 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 AGGAGGGGTTGGCCCCACACGCACAGGTGACAGCTGAAGAGCATCCAGGAGGGGGAATAC 420 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 ATCATTTTCGACACTCTAATGTGCATCTCTTGCAAGTGACACACGGGAGCTGCATTGATT 480 consensus_5533#1 ------------------------------------------------------------ consensus_5533#0 TTATCCCAGCCGCGGATTGCCCGTTGCCCTGTACACTCTCTTGGGCACTTGCTTGCTGTC 540 consensus_5533#1 ----------------------GAATCCGCACGATNGNTCTTGGGCACTTGCTTGCTGTC 38 * ** ********************** consensus_5533#0 CTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTC 600 consensus_5533#1 CTACGGCAGTCACATCAGTGGGTGGGGAATCTATTATGTGGAGAGATTAAATTTTTCTTC 98 ************************************************************ consensus_5533#0 ATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCG 660 consensus_5533#1 ATCTTCAGAGCCTGTCTCACATCCTTCTATCGTACCATCGGCTGGTCTAACTAGCAATCG 158 ************************************************************ consensus_5533#0 AAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGC 720 consensus_5533#1 AAAACAATTTGCTAGAAAGAAAACGCAAAACCCACTGAGGAAGGTACCAGTAGCGGCAGC 218 ************************************************************ consensus_5533#0 AGAAGCATCATTAGCAGGCCTCGGAAAAGTTCNCTTTGTCGTACAAACGCGCGCGGNGCT 780 consensus_5533#1 AGAAGCATCATTAGCAGGCCTCGGAAAAGTTCGCTTTGTCGTACAAACGCGCGCGGTGCT 278 ******************************** *********************** *** consensus_5533#0 GTGGATGTACNTCAATAGTGNGAGCGAGTGTGTGCATCGTTNCTTAGCANGCGCGGAAGG 840 consensus_5533#1 GTGGATGTACGTCAATAGTGTGAGCGAGTGTGTGCATCGTTCCTTAGCAGGCGCGGAAGG 338 ********** ********* ******************** ******* ********** consensus_5533#0 AAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACAT------------------- 881 consensus_5533#1 AAACCCCCGTGGCTCGCTGGATACCAACGCCAGGGGCACATCAACGTAGGCAGGCCGTGG 398 ***************************************** consensus_5533#0 ------------------------------------------------------------ consensus_5533#1 TGTAAAAGCAGGCAAAGAAAGCTCTGCTCAAACGTCGACGATTAGTGCACATAGGCATAG 458 consensus_5533#0 -------------------------------------------- consensus_5533#1 AGTGTGTGGAAAGAACGTGAAGAAGCATCTTCTCGTACCGCGAT 502 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||