These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 880 fasta sequence [CCGGGCTGTAAACAACGTAAAATCTCCTCCAAAGCCCTACTTTTTCCAGCCAAACCGTACTCAAGAGGCAGTAAAATAGAGATTACTAGTTCTAAAACGCCGATTTTCCGGATTCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGCGCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACGGGTTGTGTTTTCTTTCTGCTCGGCAAAGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTACCATCGAACGTGCTGCTGGCAACGTGCGACG] [+] EMBL BM615110 [CCGGGCTGTAAACAACGTAAAATCTCCTCCAAAGCCCTACTTTTTCCAGCCAAACCGTACTCAAGAGGCAGTAAAATAGAGATTACTAGTTCTAAAACGCCGATTTTCCGGATTCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGCGCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACGGGTTGTGTTTTCTTTCTGCTCGGCAAAGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGT ] [+] EMBL BM634996 [ ccgGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTACCATCGAACGTGCTGCTGGCAACGTGCGACG] consensusID : consensus_5549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [GATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGTCAAAAGAAAAGTGTTTTCCAGTGATTGTAGACCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTATCTCGCCACCCCCACGTTGTCTGGCTGCACTGTGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACGAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTGCCATCGAACGTGCTGCTGGCAAACGTGCGACGGTATCGCGAGTTTTTATACGAGCGGAAAGAGCTCGTCAAAAACCCGCCAAAGGAGAAGGACATCACACCGATCGGCAGTGTCACGTGTACAGATAATAGTTCTGCTGCTTCTGCTGCTGTTACAACAACCTCCACCACCAACATTCCCCAGGAAGCAACGAAGGAGAAGAGTAAAATGGTGCTGCAACCGTCTGGCAGCAATGCCACTGCCGGACAGCAACGTACAGGAGCACTT] [+] EMBL BX602056 [GATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGTCAAAAGAAAAGTGTTTTCCAGTGATTGTAGACCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTATCTCGCCACCCCCACGTTGTCTGGCTGCACTGTGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACGAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTGCCATCGAACGTGCTGCTGGCAAACGTGCGACGGTATCGCGAGTTTTTATACGAGCGGAAAGAGCTCGTCAAAAACCCGCCAAAGGAGAAGGACATCACACCGATCGGCAGTGTCACGTGTACAGATAATAGTTCTGCTGCTTCTGCTGCTGTTACAACAACCTCCACCACCAACATTCCCCAGGAAGCAACGAAGGAGAAGAGTAAAATGGTGCTGCAACCGTCTGGCAGCAATGCCACTGCCGGACAGCAACGTACAGGAGCACTT] consensusID : consensus_5549#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCTCCTCCAAAGCCCTACTTTTTCCAGCCAAACCGTACTCAAGAGGCAGTAAAATAGAGATTACTAGTTCTAAAACGCCGATTTTCCGGATTCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGCGCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACGGGTTGTGTTTTCTTTCTGCTCGGCAAAGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAA] [+] EMBL BM581406 [CCGCCCACGCGTCCGCCCACGCGTCCGCTCCTCCAAAGCCCTACTTTTTCCAGCCAAACCGTACTCAAGAGGCAGTAAAATAGAGATTACTAGTTCTAAAACGCCGATTTTCCGGATTCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGCGCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACGGGTTGTGTTTTCTTTCTGCTCGGCAAAGGCAATTGATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGATCTGAGTGTGCGTGTGTGTAAAAGTGGAAGAGTTTTATGACCTCTCTCTGTTTCGATTCTAATGTGACTCTTTTTTCCTGTCCACGATAAGATCTCGCCACCCCCACGTTGTCTGGCTGCACTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACCAAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATCAAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5549#0 -----------------CCGGGCTGTAAACAACGTA--AAATCTCCTCCAAAGCCCTACT 41 consensus_5549#2 -------------CCGCCCACGCGTCCGCCCACGCG--TCCGCTCCTCCAAAGCCCTACT 45 consensus_5549#1 GATACGGCTCGAAACGCCTAATCATCGGCAAATTTAATTTGTCTCGTCAAAAGAAAAGTG 60 * * * *** ** **** consensus_5549#0 TTTTCCAGCCAAACCGTACTC--AAGAGGCAGTAA----AATAGAGATTACTAGTTCTAA 95 consensus_5549#2 TTTTCCAGCCAAACCGTACTC--AAGAGGCAGTAA----AATAGAGATTACTAGTTCTAA 99 consensus_5549#1 TTTTCCAGTGATTGTAGACCTCGAAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTT 120 ******** * ** ** **** * * * * ** * consensus_5549#0 AACGCCGATTTTCCGGAT-TCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGC 154 consensus_5549#2 AACGCCGATTTTCCGGAT-TCAACGTGCCTGCGTGGTTCATATTTGCGATACAGGCTGGC 158 consensus_5549#1 AGATCTGAGTGTGCGTATCTCGCCACCCCCACGTTGTC--TGGCTGCACTGTGAGTGTGA 178 * * ** * * ** ** ** * ** *** ** * *** * * * consensus_5549#0 GCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACG 214 consensus_5549#2 GCGACACGTACCCTCTCGACATTTTTTTTTCGGCAATCCAAATACCAGCTGTCAGTGACG 218 consensus_5549#1 GTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAACGAAAACAAT--ACCAAA 236 * * **** ** * * * * * ** *** *** * * * * consensus_5549#0 GGTTGTGTTTTCTTTC-TGCTCGGCAAAG--GCAATTGATACGGCTCGAAACGCCTAATC 271 consensus_5549#2 GGTTGTGTTTTCTTTC-TGCTCGGCAAAG--GCAATTGATACGGCTCGAAACGCCTAATC 275 consensus_5549#1 GATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAATGGCGACACTTAATC 296 * *** * * * ** ** ** ** * * * ** * ***** consensus_5549#0 ATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCG 331 consensus_5549#2 ATCGGCAAATTTAATTTGTCTCGCCAAAATAAAAGTGTTTTCCAGTGATTGTAGAGCTCG 335 consensus_5549#1 AAGCGCTCGTGTTGGCTCTCGAAAGCAACCCGAAGGAAGCGTACGTGGTCGCAGCGGAAA 356 * ** * * * ** ** *** *** * * ** * consensus_5549#0 AAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGAT----CTGAGTGT-GCGTGT 386 consensus_5549#2 AAACGGCACTTATCACGGTCGGCGTTGTCCTCGCGTTAGAT----CTGAGTGT-GCGTGT 390 consensus_5549#1 CACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCAGAACGCCAAGTACCGCACG- 415 * * * ** * * * * * ** * * * *** ** * consensus_5549#0 GTGTAAAAGTGGAAGAGTTTTATGA--------CCTCTCTCTGTTTCGATTCTAATGTGA 438 consensus_5549#2 GTGTAAAAGTGGAAGAGTTTTATGA--------CCTCTCTCTGTTTCGATTCTAATGTGA 442 consensus_5549#1 GTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTCGGTGGAGGGTATGAAGCAG 475 *** * ** * ** * * ** ** ** * * * * * consensus_5549#0 CTCTTTTTTCCTGTCCA--CGATAAGATCT--CGCCACCCCCACGTTGTC--TGGCTGCA 492 consensus_5549#2 CTCTTTTTTCCTGTCCA--CGATAAGATCT--CGCCACCCCCACGTTGTC--TGGCTGCA 496 consensus_5549#1 TTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCTCACGGTGCCATCGAACGTG 535 * * * * ** * *** ** ** * **** ** * * * consensus_5549#0 CTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAAC----C 548 consensus_5549#2 CTGAGAGTGTGAGTGGTACGTTATCTATTGGCGTATCAATTGTAGCAGCAAAAAC----C 552 consensus_5549#1 CTGCTGGCAAACGTGCGACGGTATC---GCGAGTTTTTATACGAGCGGAAAGAGCTCGTC 592 *** * *** *** **** * ** * ** *** * ** * * * consensus_5549#0 AAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAAT 608 consensus_5549#2 AAAACAATACCAAAGATTGCGAATCGCAACACAAACGACACAGCGGCCGGCAGCAATAAT 612 consensus_5549#1 AAAAACCCGCCAAAGGAGAAGGACATCACACCGATCGGCAGTGTCACGTGTACAGATAAT 652 **** ****** * * ** * * ** ** * * * * ***** consensus_5549#0 GGCGACACTTAATCAAGCGCTCGTGT--TGGCTCTCGAAAGCAAC----CCGAAGGAAGC 662 consensus_5549#2 GGCGACACTTAATCAAGCGCTCGTGT--TGGCTCTCGAAAGCAAC----CCGAA------ 660 consensus_5549#1 AGTTCTGCTGCTTCTGCTGCTGTTACAACAACCTCCACCACCAACATTCCCCAGGAAGCA 712 * ** ** *** * * * * **** ** * consensus_5549#0 GTACGTGGTCGCAGCGGAAACACTTTTGCGCCTGCTGGACAACATCATACGCGAGCCGCA 722 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ACGAAGGAGAAGAGTAAAATGGTGCTGCAACCGTCTGGCAGCAATGCCACTGCCGGACAG 772 consensus_5549#0 GAACGCCAAGTACCGCACGGTGCGGATAGATAATCCCTCGATCAGGGAGAAGCTGCTGTC 782 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 CAACGTACAGGAGCACTT------------------------------------------ 790 consensus_5549#0 GGTGGAGGGTATGAAGCAGTTGATGCTAGCGATCGGATTCGTCGAATCGAACGGAACGCT 842 consensus_5549#2 ------------------------------------------------------------ consensus_5549#1 ------------------------------------------------------------ consensus_5549#0 CACGGTACCATCGAACGTGCTGCTGGCAACGTGCGACG 880 consensus_5549#2 -------------------------------------- consensus_5549#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||