These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5550#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 961 fasta sequence [CCGCGGACGCGTGGGTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTACGCTCGGGCTGTCCGTGTTCAGTATGCTGCTGACCGGGCTGGTGATTGGCAACGCGTACTATCAGAAGAAACAGTTCTACCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAGCATGGCCGTTATCTACATTCAGTCGCTTGTGCTGGTGCTGATGTTGGGCAAGCTGATGAAGAAAATCTTCCTCGGCACGCTGCGGGCGGCCGAGTTCGAGCATCTGATGGAGCGGTTCTGGTACGCGCTGACCGAAACCTGTCTAGCGTTTACCGTCTTTCGGGACGACTTTAATCCCAAATTTGTGGCACTGTTTACCGTGCTGCTGTTTCTAAAGTCCTTCCATTGGCTGGCAGAAGATCGTGTCGATTATATGGAGCGCAGTCCCGTGATCGGATGGTTGTTCCACGTCCGCGTGGCCGGACTGCTGCTCTGTTTGGGGCTGTTCGATTACGAGCTCATTTCGTACGCCTACCAGTCGACCATCGCGAAAGGCGTCACGGTGCAGCTCGTGTTTGGGTTCGAGTATGCGATCCTAATGACGATGGTCATTAACACGGCCATTAAGTACATCTTCCACGCAGCCGAGCTGCGCTCAGACACGCCGTGGGAGAACAAGGCCGTGTTTCTGCTGTACACCGAGCTGATCATTGGCTTTACGCGCGTCGTACTGTACGTGGTGTTTGTTATTTTGATGGTTAAGATATTCACCCTGCCCATGTTTGCCTTCCGCCCGATGTACTACACGATGCGAAACTTCAAGAAGGCGCTTAACGACGTAATTCTCTCGCGGCGTGCTATCCGCAACATGAACACGCTCTACCCGGACGCAACGCCCGAGGAGCTGCAGATGTCGGACAACATCTGCATCATCTGCCGGGGAGGATATGGTGAGCAACTCGAAG] [+] EMBL BM609173 [CCGCGGACGCGTGGGTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTACGCTCGGGCTGTCCGTGTTCAGTATGCTGCTGACCGGGCTGGTGATTGGCAACGCGTACTATCAGAAGAAACAGTTCTACCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAGCATGGCCGTTATCTACATTCAGTCGCTTGTGCTGGTGCTGATGTTGGGCAAGCTGATGAAGAAAATCTTCCTCGGCACGCTGCGGGCGGCCGAGTTCGAGCATCTGATGGAGCGGTTCTGGTACGCGCTGACCGAAACCTGTCTAGCGTTTACCGTCTTTCGGGACGACTTTAATCCCAAATTTGTGGCACTGTTTACCGTGCTGCTGTTTCTAAAGTCCTTCCATTGGCTGGCAGAAGATCGTGTCGATTATATGGAGCGCAGTCCCGTGATCGGATGGTTGTTCCACGTCCGCGTGGCCGGACTGCTGCTCTGTTTGGGGCTGTTCGATTACGAGCTCATTTCGTACGCCTACCAGTCGACCATCGCGAAAGGCGTCACGGTGCAGCTCGTGTTTGGGTTCGAGTATGCGATCCTAATGACGATGGTCATTAACACGGCCATTAAGTACATCTTCCACGCAGCCGAGCTGCGCTCAGACACGCCGTGGGAGAACAAGGCCGTG ] [+] EMBL BM607567 [ ccgGGAGCGGTTCTGGTACGCGCTGACCGAAACCTGTCTAGCGTTTACCGTCTTTCGGGACGACTTTAATCCCAAATTTGTAGCACTGTTTACCGTGCTGCTGTTTCTAAAGTCCTTCCATTGGCTGGCAGAGGATCGTGTCGATTATATGGAGCGCAGTCCCGTGATCGGATGGTTGTTCCACGTCCGCGTGGCCGGACTGCTGCTCTGTTTGGGGCTGTTCGATTACGAGCTCATTTCGTACGCCTACCAGTCGACCATCGCGAAAGGCGTCACGGTGCAGCTCGTGTTTGGGTTCGAGTATGCGATCCTAATGACGATGGTCATTAACACGGCCATTAAGTACATCTTCCACGCAGCCGAGCTGCGCTCAGACACGCCGTGGGAGAACAAGGCCGTGTTTCTGCTGTACACCGAGCTGATCATTGGCTTTACGCGCGTCGTACTGTACGTGGTGTTTGTTATTTTGATGGTTAAGATATTCACCCTGCCCATGTTTGCCTTCCGCCCGATGTACTACACGATGCGAAACTTCAAGAAGGCGCTTAACGACGTAATTCTCTCGCGGCGTGCTATCCGCAACATGAACACGCTCTACCCGGACGCAACGCCCGAGGAGCTGCAGATGTCGGACAACATCTGCATCATCTGCCGGGGAGGATATGGTGAGCAACTCGAAG] consensusID : consensus_5550#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence [CCGCGGAAAATAGTGGTGTTTACGTGTACTTTAAAAGTGTAGTAAAGAACACAAGAATTACAGCTTTTCGCAAGGTCCACAACGCACCCCGTTTGCCGTCCCCCGCAGCCACCCCTCCAATTTGGGTAAACAGTCGTACGTGGGTGCCGCGCACTGGTCGGACCAGTTTGATGGGAGCAAACTTTGGCACCGGAAGAGTCGACGGAACGAAAACGAATGAAACACGGTGCACTGGGCGGAGAGGTGAAGAAGTTTTCTCGCGGACGAGCTTCGGCTTACAACAGGTGCTGGTGCAGCGGTGGTAAAAGCGTTCCTCCGTTCCCCGTTCGTGGGTGCCTGCCGGGAAGCTTCGCGCGACAACTGCGTTCCACCGGAAAGGTCCGGAGGTCCCCGAGGTAGACACGATTAACATATTCTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTACCGCTCGGGCTGTCCGTGTTCAGCATGCTGCTGACCGGGGCTGGTGATCGGCAACGCGTACTATCAGAAGAAACAGTACTACCCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAAGCATGGCCGTCATCTACATTCAGTCGCTCGTGCTTGGTGCTGATGTTGGGCAAGCTGATGAAGA] [+] EMBL BM644178 [CCGCGGAAAATAGTGGTGTTTACGTGTACTTTAAAAGTGTAGTAAAGAACACAAGAATTACAGCTTTTCGCAAGGTCCACAACGCACCCCGTTTGCCGTCCCCCGCAGCCACCCCTCCAATTTGGGTAAACAGTCGTACGTGGGTGCCGCGCACTGGTCGGACCAGTTTGATGGGAGCAAACTTTGGCACCGGAAGAGTCGACGGAACGAAAACGAATGAAACACGGTGCACTGGGCGGAGAGGTGAAGAAGTTTTCTCGCGGACGAGCTTCGGCTTACAACAGGTGCTGGTGCAGCGGTGGTAAAAGCGTTCCTCCGTTCCCCGTTCGTGGGTGCCTGCCGGGAAGCTTCGCGCGACAACTGCGTTCCACCGGAAAGGTCCGGAGGTCCCCGAGGTAGACACGATTAACATATTCTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTACCGCTCGGGCTGTCCGTGTTCAGCATGCTGCTGACCGGGGCTGGTGATCGGCAACGCGTACTATCAGAAGAAACAGTACTACCCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAAGCATGGCCGTCATCTACATTCAGTCGCTCGTGCTTGGTGCTGATGTTGGGCAAGCTGATG ] [+] EMBL BM581490 [ ccgGTGGTGTTTACGTGTACTTTAAAAGTGTAGTAAAGAACACAAGAATTACAGCTTTTCGCAAGGTCCACAACGCACTCCGTTTGCCGTCCCCCGCAGCCACCCCTCCAATTTGAGTAAACAGTCGTACGTGGGTGCCGCGCACTGGTCGGACCAGTTTGATGGGAGCAAACTTTGGCACCGGAAGAGTCGACGGAACGAAAACGAATGAAACACGGTGCACTGGGCGGAGAGGTGAAGAAGTTTTCTCGCGGACGAGCTTCGGCTTACAACAGGTGCTGGTGCAGCGGTGGTAAAAGCGTTCCTCCGTTCCCCGTTCGTGGGTGCCCGCCGGGAAGCTTCGCGCGACAACTGCGTTCCACCGG ACGGTCCGGAGGTCCCCGAGGTAGACACGATTAACATATTCTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGTA CGCTCGGGCTGTCCGTGTTCAGCATGCTGCTGACC GGGCTGGTGATTGGCAACGCGTACTATCAGAAGAAACAGTTCTACCCCGTCCGTCGTGTACATCACCAAGTCGAACCCG AGCATGGCCGTTATCTACATTCAGTCGCTCGTGC TGGTGCTGATGTTGGGCAAGCTGATGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5550#0 CCGCGGACGCGTGGGTTCGAAACCATCAGCCAGCTGGCTGAAAACTGCGTCAAGATGCGT 60 consensus_5550#1 ------------------------------------------------------CCGCGG 6 *** consensus_5550#0 ACGCTCGGGCTGTCCGTGTTCAGTATGCTGCTGACCGGGCTGGTGATTGGCAACGCGTAC 120 consensus_5550#1 AAAATAGTGGTGTTTACGTGTACTTTAAAAGTG-TAGTAAAGAACACAAGAATTACAGCT 65 * * * * *** ** * * * ** * * * * * * consensus_5550#0 TATCAGAAGAA--ACAGTTCTACCCGTCCGTCGTGTACATCACCAAGTCGAACCCGAGCA 178 consensus_5550#1 TTTCGCAAGGTCCACAACGCACCCCGTTTGCCGTCCCCCGCAGCCACCC---CTCCAATT 122 * ** *** *** * ***** * *** * ** * * * * * * consensus_5550#0 TGGCCGTTATCTACATTCAGTCGCTTGTGCTG-GTGCTGATGTTGGGCAAGCTGATGAAG 237 consensus_5550#1 TGG-----GTAAACAGTCGTACGTGGGTGCCGCGCACTG--GTCGGACCAGTT--TGATG 173 *** * *** ** ** **** * * *** ** ** * ** * *** * consensus_5550#0 AAAATCTTCCTCGGCACGCTGCGGGCGGCCGAGTTCGAGCATCTGATGGAGCGGTTCTGG 297 consensus_5550#1 GGAGCAAACTTTGGCACCGGAAGAGTCGACGGAACGAA--AACGAATGAAACA----CGG 227 * * * ***** * * * ** * * * *** * * ** consensus_5550#0 TACGCGCTGACCGAAACCTGTCTAGCGTTTACCGTCTTTCGGGACGACTTTAATCCCAAA 357 consensus_5550#1 TGCAC-TGGGCGGAGAGGTGAAGAAGTTTTCTCGC------GGACGAGCTTCGGCTTACA 280 * * * * * ** * ** * *** ** ****** ** * * * consensus_5550#0 TTTGTGGCACTGTTTACCGTGCTGCTGTTTCTAAAGTCCTTCCATTGGCTGGCAGAAGAT 417 consensus_5550#1 ACAG--GTGCTGGT----GCAGCGGTGGTAAAAGCGTTCCTCCGTTCCCCGT-------T 327 * * *** * * * ** * * ** * *** ** * * * consensus_5550#0 CGTGTCGATTATATGGAGCGCAGTCCCGTGATCGGATGGTTGTTCCACGTCCGCGTGGCC 477 consensus_5550#1 CGT---GGGTGCCTGCCGGGAAGCTTCGCG---CGACAACTGCGTTCCACCGGAAAGGTC 381 *** * * ** * * ** ** * ** ** * * * ** * consensus_5550#0 GGACTGCTGCTCTGTTTGGGGCTGTTCGATTACGAGCTCATTTCGTACGCCTACCAGTCG 537 consensus_5550#1 CGGAGGTCCCCGAGGTAGACACGATTAACATATTCTTCGAAACCATCAGCCAGCTGGCTG 441 * * * * * * * ** ** * * * *** * * * consensus_5550#0 ACCATCGCGAAAGGCGTCACGGTGCAGCTCGTGTTTGGGTTCGAGTATGCGATCCTAATG 597 consensus_5550#1 AAAACTGCGTCAAGATGC---GTACCGCTCGGGCT---GTCCGTGTTCAGCATGCTGCTG 495 * * *** * * * ** * ***** * * ** ** ** ** ** ** consensus_5550#0 ACGATGGTCATTAACACGGCCATTAAGTACATCTTCCACGCAGCCGAGCTGCGCTCAGAC 657 consensus_5550#1 ACCGGGGCTGGTGAT-CGGC-AACGCGTAC-TATCAGAAGAAACAGTACTACCCC---GT 549 ** ** * * **** * **** * * * * * * * ** * * consensus_5550#0 ACGCCGTGGGAGAACAAGGCCGTGTTTCTGCTGTACACCGAGCTGATCATTGGCTTTACG 717 consensus_5550#1 CCGTCGTGT----ACATCACCAAGTCGAACCCG-AAGCATGGCCG-TCATCTACATTCAG 603 ** **** *** ** ** * * * * ** * **** * ** * consensus_5550#0 CGCGTCGTACTGTACG-TGGTGTTTGTTATTTTGATGGTTAAGATATTCACCCTGCCCAT 776 consensus_5550#1 TCGCTCGTGCTTGGTGCTGATGTTGGGCAAGCTGATGAAGA------------------- 644 **** ** * ** **** * * ***** * consensus_5550#0 GTTTGCCTTCCGCCCGATGTACTACACGATGCGAAACTTCAAGAAGGCGCTTAACGACGT 836 consensus_5550#1 ------------------------------------------------------------ consensus_5550#0 AATTCTCTCGCGGCGTGCTATCCGCAACATGAACACGCTCTACCCGGACGCAACGCCCGA 896 consensus_5550#1 ------------------------------------------------------------ consensus_5550#0 GGAGCTGCAGATGTCGGACAACATCTGCATCATCTGCCGGGGAGGATATGGTGAGCAACT 956 consensus_5550#1 ------------------------------------------------------------ consensus_5550#0 CGAAG 961 consensus_5550#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||